Literature DB >> 21216774

The Physiome Model Repository 2.

Tommy Yu1, Catherine M Lloyd, David P Nickerson, Michael T Cooling, Andrew K Miller, Alan Garny, Jonna R Terkildsen, James Lawson, Randall D Britten, Peter J Hunter, Poul M F Nielsen.   

Abstract

MOTIVATION: The Physiome Model Repository 2 (PMR2) software was created as part of the IUPS Physiome Project (Hunter and Borg, 2003), and today it serves as the foundation for the CellML model repository. Key advantages brought to the end user by PMR2 include: facilities for model exchange, enhanced collaboration and a detailed change history for each model. AVAILABILITY: PMR2 is available under an open source license at http://www.cellml.org/tools/pmr/; a fully functional instance of this software can be accessed at http://models.physiomeproject.org/.

Entities:  

Mesh：

Year:  2011        PMID： 21216774     DOI： 10.1093/bioinformatics/btq723

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  54 in total

1.  Requirements for the formal representation of pathophysiology mechanisms by clinicians.

Authors:  B de Bono; M Helvensteijn; N Kokash; I Martorelli; D Sarwar; S Islam; P Grenon; P Hunter
Journal:  Interface Focus       Date:  2016-04-06       Impact factor: 3.906

2.  Qualitative causal analyses of biosimulation models.

Authors:  Maxwell L Neal; John H Gennari; Daniel L Cook
Journal:  CEUR Workshop Proc       Date:  2016-11-29

3.  SemGen: a tool for semantics-based annotation and composition of biosimulation models.

Authors:  Maxwell L Neal; Christopher T Thompson; Karam G Kim; Ryan C James; Daniel L Cook; Brian E Carlson; John H Gennari
Journal:  Bioinformatics       Date:  2019-05-01       Impact factor: 6.937

Review 4.  The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable.

Authors:  David Nickerson; Koray Atalag; Bernard de Bono; Jörg Geiger; Carole Goble; Susanne Hollmann; Joachim Lonien; Wolfgang Müller; Babette Regierer; Natalie J Stanford; Martin Golebiewski; Peter Hunter
Journal:  Interface Focus       Date:  2016-04-06       Impact factor: 3.906

5.  Multiscale musculoskeletal modelling, data-model fusion and electromyography-informed modelling.

Authors:  J Fernandez; J Zhang; T Heidlauf; M Sartori; T Besier; O Röhrle; D Lloyd
Journal:  Interface Focus       Date:  2016-04-06       Impact factor: 3.906

6.  Modular modelling with Physiome standards.

Authors:  Michael T Cooling; David P Nickerson; Poul M F Nielsen; Peter J Hunter
Journal:  J Physiol       Date:  2016-08-29       Impact factor: 5.182

7.  Ca2+ Release via IP3 Receptors Shapes the Cardiac Ca2+ Transient for Hypertrophic Signaling.

Authors:  Hilary Hunt; Agnė Tilūnaitė; Greg Bass; Christian Soeller; H Llewelyn Roderick; Vijay Rajagopal; Edmund J Crampin
Journal:  Biophys J       Date:  2020-08-13       Impact factor: 4.033

8.  Meeting the multiscale challenge: representing physiology processes over ApiNATOMY circuits using bond graphs.

Authors:  B de Bono; S Safaei; P Grenon; P Hunter
Journal:  Interface Focus       Date:  2017-12-15       Impact factor: 3.906

9.  Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices.

Authors:  Natalie J Stanford; Martin Scharm; Paul D Dobson; Martin Golebiewski; Michael Hucka; Varun B Kothamachu; David Nickerson; Stuart Owen; Jürgen Pahle; Ulrike Wittig; Dagmar Waltemath; Carole Goble; Pedro Mendes; Jacky Snoep
Journal:  Methods Mol Biol       Date:  2019

10.  Editorial: TBME Letters special issue on multiscale modeling and analysis in computational biology and medicine--part-2.

Authors:  Jean-Louis Coatrieux; Alejandro F Frangi; Grace C Y Peng; David Z D'Argenio; Vasilis Z Marmarelis; Anushka Michailova
Journal:  IEEE Trans Biomed Eng       Date:  2011-12       Impact factor: 4.538
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