Literature DB >> 34129842

Artificial Intelligence and Cellular Segmentation in Tissue Microscopy Images.

Madeleine S Durkee1, Rebecca Abraham2, Marcus R Clark2, Maryellen L Giger3.   

Abstract

With applications in object detection, image feature extraction, image classification, and image segmentation, artificial intelligence is facilitating high-throughput analysis of image data in a variety of biomedical imaging disciplines, ranging from radiology and pathology to cancer biology and immunology. Specifically, a growth in research on deep learning has led to the widespread application of computer-visualization techniques for analyzing and mining data from biomedical images. The availability of open-source software packages and the development of novel, trainable deep neural network architectures has led to increased accuracy in cell detection and segmentation algorithms. By automating cell segmentation, it is now possible to mine quantifiable cellular and spatio-cellular features from microscopy images, providing insight into the organization of cells in various pathologies. This mini-review provides an overview of the current state of the art in deep learning- and artificial intelligence-based methods of segmentation and data mining of cells in microscopy images of tissue.
Copyright © 2021 American Society for Investigative Pathology. Published by Elsevier Inc. All rights reserved.

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Mesh:

Year:  2021        PMID: 34129842      PMCID: PMC8485056          DOI: 10.1016/j.ajpath.2021.05.022

Source DB:  PubMed          Journal:  Am J Pathol        ISSN: 0002-9440            Impact factor:   5.770


  37 in total

Review 1.  Digital radiography. A comparison with modern conventional imaging.

Authors:  G J Bansal
Journal:  Postgrad Med J       Date:  2006-07       Impact factor: 2.401

2.  Content-aware image restoration: pushing the limits of fluorescence microscopy.

Authors:  Martin Weigert; Uwe Schmidt; Tobias Boothe; Andreas Müller; Alexandr Dibrov; Akanksha Jain; Benjamin Wilhelm; Deborah Schmidt; Coleman Broaddus; Siân Culley; Mauricio Rocha-Martins; Fabián Segovia-Miranda; Caren Norden; Ricardo Henriques; Marino Zerial; Michele Solimena; Jochen Rink; Pavel Tomancak; Loic Royer; Florian Jug; Eugene W Myers
Journal:  Nat Methods       Date:  2018-11-26       Impact factor: 28.547

Review 3.  Histopathological image analysis: a review.

Authors:  Metin N Gurcan; Laura E Boucheron; Ali Can; Anant Madabhushi; Nasir M Rajpoot; B Yener
Journal:  IEEE Rev Biomed Eng       Date:  2009-10-30

4.  Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks.

Authors:  Shaoqing Ren; Kaiming He; Ross Girshick; Jian Sun
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2016-06-06       Impact factor: 6.226

5.  Image-Based Cell Profiling Enables Quantitative Tissue Microscopy in Gastroenterology.

Authors:  John W Wills; Jack Robertson; Huw D Summers; Michelle Miniter; Claire Barnes; Rachel E Hewitt; Åsa V Keita; Johan D Söderholm; Paul Rees; Jonathan J Powell
Journal:  Cytometry A       Date:  2020-05-23       Impact factor: 4.355

6.  Digital Pathology: Data-Intensive Frontier in Medical Imaging: Health-information sharing, specifically of digital pathology, is the subject of this paper which discusses how sharing the rich images in pathology can stretch the capabilities of all otherwise well-practiced disciplines.

Authors:  Lee A D Cooper; Alexis B Carter; Alton B Farris; Fusheng Wang; Jun Kong; David A Gutman; Patrick Widener; Tony C Pan; Sharath R Cholleti; Ashish Sharma; Tahsin M Kurc; Daniel J Brat; Joel H Saltz
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2012-04       Impact factor: 10.961

7.  Altered cytoplasmic-to-nuclear ratio of survivin is a prognostic indicator in breast cancer.

Authors:  Donal J Brennan; Elton Rexhepaj; Sallyann L O'Brien; Elaine McSherry; Darran P O'Connor; Ailís Fagan; Aedín C Culhane; Desmond G Higgins; Karin Jirstrom; Robert C Millikan; Goran Landberg; Michael J Duffy; Stephen M Hewitt; William M Gallagher
Journal:  Clin Cancer Res       Date:  2008-05-01       Impact factor: 12.531

Review 8.  Artificial intelligence in digital pathology - new tools for diagnosis and precision oncology.

Authors:  Kaustav Bera; Kurt A Schalper; David L Rimm; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Nat Rev Clin Oncol       Date:  2019-08-09       Impact factor: 66.675

9.  IBEX: A versatile multiplex optical imaging approach for deep phenotyping and spatial analysis of cells in complex tissues.

Authors:  Andrea J Radtke; Evelyn Kandov; Bradley Lowekamp; Emily Speranza; Colin J Chu; Anita Gola; Nishant Thakur; Rochelle Shih; Li Yao; Ziv Rafael Yaniv; Rebecca T Beuschel; Juraj Kabat; Joshua Croteau; Jeremy Davis; Jonathan M Hernandez; Ronald N Germain
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-21       Impact factor: 12.779

Review 10.  Artificial Intelligence and Digital Pathology: Challenges and Opportunities.

Authors:  Hamid Reza Tizhoosh; Liron Pantanowitz
Journal:  J Pathol Inform       Date:  2018-11-14
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  2 in total

1.  Specific in situ inflammatory states associate with progression to renal failure in lupus nephritis.

Authors:  Rebecca Abraham; Madeleine S Durkee; Junting Ai; Margaret Veselits; Gabriel Casella; Yuta Asano; Anthony Chang; Kichul Ko; Charles Oshinsky; Emily Peninger; Maryellen L Giger; Marcus R Clark
Journal:  J Clin Invest       Date:  2022-07-01       Impact factor: 19.456

2.  TNTdetect.AI: A Deep Learning Model for Automated Detection and Counting of Tunneling Nanotubes in Microscopy Images.

Authors:  Yasin Ceran; Hamza Ergüder; Katherine Ladner; Sophie Korenfeld; Karina Deniz; Sanyukta Padmanabhan; Phillip Wong; Murat Baday; Thomas Pengo; Emil Lou; Chirag B Patel
Journal:  Cancers (Basel)       Date:  2022-10-10       Impact factor: 6.575

  2 in total

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