Literature DB >> 34129823

Molecular classification and diagnostics of upper urinary tract urothelial carcinoma.

Yoichi Fujii1, Yusuke Sato2, Hiromichi Suzuki3, Nobuyuki Kakiuchi4, Tetsuichi Yoshizato3, Andrew T Lenis5, Shigekatsu Maekawa6, Akira Yokoyama3, Yasuhide Takeuchi4, Yoshikage Inoue4, Yotaro Ochi3, Yusuke Shiozawa3, Kosuke Aoki3, Kenichi Yoshida3, Keisuke Kataoka7, Masahiro M Nakagawa3, Yasuhito Nannya4, Hideki Makishima4, Jimpei Miyakawa6, Taketo Kawai6, Teppei Morikawa8, Yuichi Shiraishi9, Kenichi Chiba9, Hiroko Tanaka10, Genta Nagae11, Masashi Sanada12, Eiji Sugihara13, Taka-Aki Sato13, Tohru Nakagawa14, Masashi Fukayama8, Tetsuo Ushiku8, Hiroyuki Aburatani11, Satoru Miyano15, Jonathan A Coleman5, Yukio Homma16, David B Solit17, Haruki Kume6, Seishi Ogawa18.   

Abstract

Upper urinary tract urothelial carcinoma (UTUC) is one of the common urothelial cancers. Its molecular pathogenesis, however, is poorly understood, with no useful biomarkers available for accurate diagnosis and molecular classification. Through an integrated genetic study involving 199 UTUC samples, we delineate the landscape of genetic alterations in UTUC enabling genetic/molecular classification. According to the mutational status of TP53, MDM2, RAS, and FGFR3, UTUC is classified into five subtypes having discrete profiles of gene expression, tumor location/histology, and clinical outcome, which is largely recapitulated in an independent UTUC cohort. Sequencing of urine sediment-derived DNA has a high diagnostic value for UTUC with 82.2% sensitivity and 100% specificity. These results provide a solid basis for better diagnosis and management of UTUC.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  FGFR3; RAS; TP53; hypermutation; integrated molecular study; molecular classification; molecular diagnostic; transcriptome; upper urinary tract urothelial carcinoma; urothelial carcinoma

Mesh:

Substances:

Year:  2021        PMID: 34129823      PMCID: PMC9110171          DOI: 10.1016/j.ccell.2021.05.008

Source DB:  PubMed          Journal:  Cancer Cell        ISSN: 1535-6108            Impact factor:   38.585


  72 in total

1.  Genomic spectra of biliary tract cancer.

Authors:  Hiromi Nakamura; Yasuhito Arai; Yasushi Totoki; Tomoki Shirota; Asmaa Elzawahry; Mamoru Kato; Natsuko Hama; Fumie Hosoda; Tomoko Urushidate; Shoko Ohashi; Nobuyoshi Hiraoka; Hidenori Ojima; Kazuaki Shimada; Takuji Okusaka; Tomoo Kosuge; Shinichi Miyagawa; Tatsuhiro Shibata
Journal:  Nat Genet       Date:  2015-08-10       Impact factor: 38.330

2.  Genomic Characterization of Upper Tract Urothelial Carcinoma.

Authors:  John P Sfakianos; Eugene K Cha; Gopa Iyer; Sasinya N Scott; Emily C Zabor; Ronak H Shah; Qinghu Ren; Aditya Bagrodia; Philip H Kim; A Ari Hakimi; Irina Ostrovnaya; Ricardo Ramirez; Aphrothiti J Hanrahan; Neil B Desai; Arony Sun; Patrizia Pinciroli; Jonathan E Rosenberg; Guido Dalbagni; Nikolaus Schultz; Dean F Bajorin; Victor E Reuter; Michael F Berger; Bernard H Bochner; Hikmat A Al-Ahmadie; David B Solit; Jonathan A Coleman
Journal:  Eur Urol       Date:  2015-08-14       Impact factor: 20.096

3.  Comprehensive Transcriptional Analysis of Early-Stage Urothelial Carcinoma.

Authors:  Jakob Hedegaard; Philippe Lamy; Iver Nordentoft; Ferran Algaba; Søren Høyer; Benedicte Parm Ulhøi; Søren Vang; Thomas Reinert; Gregers G Hermann; Karin Mogensen; Mathilde Borg Houlberg Thomsen; Morten Muhlig Nielsen; Mirari Marquez; Ulrika Segersten; Mattias Aine; Mattias Höglund; Karin Birkenkamp-Demtröder; Niels Fristrup; Michael Borre; Arndt Hartmann; Robert Stöhr; Sven Wach; Bastian Keck; Anna Katharina Seitz; Roman Nawroth; Tobias Maurer; Cane Tulic; Tatjana Simic; Kerstin Junker; Marcus Horstmann; Niels Harving; Astrid Christine Petersen; M Luz Calle; Ewout W Steyerberg; Willemien Beukers; Kim E M van Kessel; Jørgen Bjerggaard Jensen; Jakob Skou Pedersen; Per-Uno Malmström; Núria Malats; Francisco X Real; Ellen C Zwarthoff; Torben Falck Ørntoft; Lars Dyrskjøt
Journal:  Cancer Cell       Date:  2016-06-16       Impact factor: 31.743

4.  Allele-specific copy number analysis of tumors.

Authors:  Peter Van Loo; Silje H Nordgard; Ole Christian Lingjærde; Hege G Russnes; Inga H Rye; Wei Sun; Victor J Weigman; Peter Marynen; Anders Zetterberg; Bjørn Naume; Charles M Perou; Anne-Lise Børresen-Dale; Vessela N Kristensen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-13       Impact factor: 11.205

5.  Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide-polymorphism genotyping microarrays.

Authors:  Go Yamamoto; Yasuhito Nannya; Motohiro Kato; Masashi Sanada; Ross L Levine; Norihiko Kawamata; Akira Hangaishi; Mineo Kurokawa; Shigeru Chiba; D Gary Gilliland; H Phillip Koeffler; Seishi Ogawa
Journal:  Am J Hum Genet       Date:  2007-06-05       Impact factor: 11.025

6.  Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations.

Authors:  Jiang Chang; Wenle Tan; Zhiqiang Ling; Ruibin Xi; Mingming Shao; Mengjie Chen; Yingying Luo; Yanjie Zhao; Yun Liu; Xiancong Huang; Yuchao Xia; Jinlin Hu; Joel S Parker; David Marron; Qionghua Cui; Linna Peng; Jiahui Chu; Hongmin Li; Zhongli Du; Yaling Han; Wen Tan; Zhihua Liu; Qimin Zhan; Yun Li; Weimin Mao; Chen Wu; Dongxin Lin
Journal:  Nat Commun       Date:  2017-05-26       Impact factor: 14.919

7.  TGFβ attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells.

Authors:  Sanjeev Mariathasan; Shannon J Turley; Dorothee Nickles; Alessandra Castiglioni; Kobe Yuen; Yulei Wang; Edward E Kadel; Hartmut Koeppen; Jillian L Astarita; Rafael Cubas; Suchit Jhunjhunwala; Romain Banchereau; Yagai Yang; Yinghui Guan; Cecile Chalouni; James Ziai; Yasin Şenbabaoğlu; Stephen Santoro; Daniel Sheinson; Jeffrey Hung; Jennifer M Giltnane; Andrew A Pierce; Kathryn Mesh; Steve Lianoglou; Johannes Riegler; Richard A D Carano; Pontus Eriksson; Mattias Höglund; Loan Somarriba; Daniel L Halligan; Michiel S van der Heijden; Yohann Loriot; Jonathan E Rosenberg; Lawrence Fong; Ira Mellman; Daniel S Chen; Marjorie Green; Christina Derleth; Gregg D Fine; Priti S Hegde; Richard Bourgon; Thomas Powles
Journal:  Nature       Date:  2018-02-14       Impact factor: 49.962

8.  PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions.

Authors:  Jaroslav Bendl; Miloš Musil; Jan Štourač; Jaroslav Zendulka; Jiří Damborský; Jan Brezovský
Journal:  PLoS Comput Biol       Date:  2016-05-25       Impact factor: 4.475

9.  Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy.

Authors:  Simeon U Springer; Chung-Hsin Chen; Maria Del Carmen Rodriguez Pena; Lu Li; Christopher Douville; Yuxuan Wang; Joshua David Cohen; Diana Taheri; Natalie Silliman; Joy Schaefer; Janine Ptak; Lisa Dobbyn; Maria Papoli; Isaac Kinde; Bahman Afsari; Aline C Tregnago; Stephania M Bezerra; Christopher VandenBussche; Kazutoshi Fujita; Dilek Ertoy; Isabela W Cunha; Lijia Yu; Trinity J Bivalacqua; Arthur P Grollman; Luis A Diaz; Rachel Karchin; Ludmila Danilova; Chao-Yuan Huang; Chia-Tung Shun; Robert J Turesky; Byeong Hwa Yun; Thomas A Rosenquist; Yeong-Shiau Pu; Ralph H Hruban; Cristian Tomasetti; Nickolas Papadopoulos; Ken W Kinzler; Bert Vogelstein; Kathleen G Dickman; George J Netto
Journal:  Elife       Date:  2018-03-20       Impact factor: 8.140

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  10 in total

1.  RAF1 amplification drives a subset of bladder tumors and confers sensitivity to MAPK-directed therapeutics.

Authors:  Raie T Bekele; Amruta S Samant; Amin H Nassar; Jonathan So; Elizabeth P Garcia; Catherine R Curran; Justin H Hwang; David L Mayhew; Anwesha Nag; Aaron R Thorner; Judit Börcsök; Zsofia Sztupinszki; Chong-Xian Pan; Joaquim Bellmunt; David J Kwiatkowski; Guru P Sonpavde; Eliezer M Van Allen; Kent W Mouw
Journal:  J Clin Invest       Date:  2021-11-15       Impact factor: 19.456

2.  Molecular Characterization of Upper Tract Urothelial Carcinoma for Precision Therapeutics and Non-invasive Diagnostics.

Authors:  Emiko Sugawara; Kei Koyama; Kentaro Inamura
Journal:  Curr Genomics       Date:  2022-04-07       Impact factor: 2.689

3.  DNA methylation subtypes guiding prognostic assessment and linking to responses the DNA methyltransferase inhibitor SGI-110 in urothelial carcinoma.

Authors:  Juan Li; Yuan Liang; Jian Fan; Chunru Xu; Bao Guan; Jianye Zhang; Bin Guo; Yue Shi; Ping Wang; Yezhen Tan; Qi Zhang; Changwei Yuan; Yucai Wu; Liqun Zhou; Weimin Ci; Xuesong Li
Journal:  BMC Med       Date:  2022-07-18       Impact factor: 11.150

Review 4.  Alterations of Chromatin Regulators in the Pathogenesis of Urinary Bladder Urothelial Carcinoma.

Authors:  Michèle J Hoffmann; Wolfgang A Schulz
Journal:  Cancers (Basel)       Date:  2021-11-30       Impact factor: 6.639

5.  Driver mutations of intrahepatic cholangiocarcinoma shape clinically relevant genomic clusters with distinct molecular features and therapeutic vulnerabilities.

Authors:  Xiang-Yu Wang; Wen-Wei Zhu; Zheng Wang; Jian-Bo Huang; Sheng-Hao Wang; Fu-Mao Bai; Tian-En Li; Ying Zhu; Jing Zhao; Xin Yang; Lu Lu; Ju-Bo Zhang; Hu-Liang Jia; Qiong-Zhu Dong; Jin-Hong Chen; Jesper B Andersen; Dan Ye; Lun-Xiu Qin
Journal:  Theranostics       Date:  2022-01-01       Impact factor: 11.600

6.  Predictive Value of Preoperative Positive Urine Cytology for Development of Bladder Cancer After Nephroureterectomy in Patients With Upper Urinary Tract Urothelial Carcinoma: A Prognostic Nomogram Based on a Retrospective Multicenter Cohort Study and Systematic Meta-Analysis.

Authors:  Bo Fan; Yuanbin Huang; Shuang Wen; Qiliang Teng; Xinrui Yang; Man Sun; Tingyu Chen; Yan Huang; Yumei Wang; Zhiyu Liu
Journal:  Front Oncol       Date:  2021-10-01       Impact factor: 6.244

7.  Impact of immune-related adverse events on the therapeutic efficacy of pembrolizumab in urothelial carcinoma: a multicenter retrospective study using time-dependent analysis.

Authors:  Taketo Kawai; Satoru Taguchi; Tohru Nakagawa; Jun Kamei; Yu Nakamura; Daisuke Obinata; Kenya Yamaguchi; Tomoyuki Kaneko; Shigenori Kakutani; Mayuko Tokunaga; Yukari Uemura; Yusuke Sato; Yutaka Enomoto; Hiroaki Nishimatsu; Tetsuya Fujimura; Hiroshi Fukuhara; Satoru Takahashi; Haruki Kume
Journal:  J Immunother Cancer       Date:  2022-02       Impact factor: 13.751

8.  The Evolution of Clinicopathological Diagnostic Features of Upper Tract Urothelial Carcinoma in China: A Summary of 2561 Cases in the Last 20 Years.

Authors:  Chunru Xu; Changwei Yuan; Cuijian Zhang; Dong Fang; Yanfei Yu; Xiang Wang; Zhihua Li; Yan Wang; Qi Tang; Gengyan Xiong; Lei Zhang; Zhisong He; Jian Lin; Liqun Zhou; Xuesong Li
Journal:  Front Oncol       Date:  2022-03-09       Impact factor: 6.244

9.  Urine Cellular DNA Point Mutation and Methylation for Identifying Upper Tract Urinary Carcinoma.

Authors:  Wei Ouyang; Lufeng Luo; Junjie Zhang; Ran Xu; Qiang Lu; Zhenzhou Xu; Jianye Liu; Pei Li; Yaqun Zhang; Chuanchi Zhou; Wei Tang; Zhenting Wang; Manman Cao; Genming Xu; Long Wang
Journal:  Cancers (Basel)       Date:  2022-07-21       Impact factor: 6.575

10.  The efficacy and safety of first-line treatment in cisplatin-ineligible advanced upper tract urothelial carcinoma patients: a comparison of PD-1 inhibitor and carboplatin plus gemcitabine chemotherapy.

Authors:  Jiwei Huang; Ruopeng Su; Zeyu Chen; Shuai Jiang; Minfeng Chen; Yichu Yuan; Hailong Hu; Changde Fu; Zhiyang Huang; Zhenyu Wang; Bing Zheng; Chancan Li; Zaoyu Wang; Yige Bao; Ming Cai; Jianming Guo; Qiang Wei; Wei Xue
Journal:  Oncoimmunology       Date:  2022-09-17       Impact factor: 7.723

  10 in total

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