Literature DB >> 34124313

Chromatographic Assays for the Enzymatic Degradation of Chitin.

Sophanit Mekasha1, Tina R Tuveng1, Gustav Vaaje-Kolstad1, Vincent G H Eijsink1.   

Abstract

Chitin is an insoluble linear polymer of β(1→4)-linked N-acetylglucosamine. Enzymatic cleavage of chitin chains can be achieved using hydrolytic enzymes, called chitinases, and/or oxidative enzymes, called lytic polysaccharide monooxygenases (LPMOs). These two groups of enzymes have different modes of action and yield different product types that require different analytical methods for detection and quantitation. While soluble chromogenic substrates are readily available for chitinases, proper insight into the activity of these enzymes can only be obtained by measuring activity toward their polymeric, insoluble substrate, chitin. For LPMOs, only assays using insoluble chitin are possible and relevant. Working with insoluble substrates complicates enzyme assays from substrate preparation to product analysis. Here, we describe typical set-ups for chitin degradation reactions and the chromatographic methods used for product analysis. Graphical abstract: Overview of chromatographic methods for assessing the enzymatic degradation of chitin.
Copyright © 2021 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Ascorbic acid (AscA); Chitin; Chitinase; Chitobionic acid; Chitobiose; HPLC; LPMO; Lytic polysaccharide monooxygenase; N-acetylglucosamine

Year:  2021        PMID: 34124313      PMCID: PMC8161105          DOI: 10.21769/BioProtoc.4014

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  20 in total

1.  Refinement of the structure of beta-chitin.

Authors:  K H Gardner; J Blackwell
Journal:  Biopolymers       Date:  1975-08       Impact factor: 2.505

2.  Costs and benefits of processivity in enzymatic degradation of recalcitrant polysaccharides.

Authors:  Svein J Horn; Pawel Sikorski; Jannicke B Cederkvist; Gustav Vaaje-Kolstad; Morten Sørlie; Bjørnar Synstad; Gert Vriend; Kjell M Vårum; Vincent G H Eijsink
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-20       Impact factor: 11.205

3.  pH-Dependent Relationship between Catalytic Activity and Hydrogen Peroxide Production Shown via Characterization of a Lytic Polysaccharide Monooxygenase from Gloeophyllum trabeum.

Authors:  Olav A Hegnar; Dejan M Petrovic; Bastien Bissaro; Gry Alfredsen; Anikó Várnai; Vincent G H Eijsink
Journal:  Appl Environ Microbiol       Date:  2019-02-20       Impact factor: 4.792

4.  Multipoint Precision Binding of Substrate Protects Lytic Polysaccharide Monooxygenases from Self-Destructive Off-Pathway Processes.

Authors:  Jennifer S M Loose; Magnus Ø Arntzen; Bastien Bissaro; Roland Ludwig; Vincent G H Eijsink; Gustav Vaaje-Kolstad
Journal:  Biochemistry       Date:  2018-06-29       Impact factor: 3.162

Review 5.  The chitinolytic machinery of Serratia marcescens--a model system for enzymatic degradation of recalcitrant polysaccharides.

Authors:  Gustav Vaaje-Kolstad; Svein J Horn; Morten Sørlie; Vincent G H Eijsink
Journal:  FEBS J       Date:  2013-03-07       Impact factor: 5.542

Review 6.  β-N-acetylhexosaminidase: what's in a name…?

Authors:  Kristýna Slámová; Pavla Bojarová; Lucie Petrásková; Vladimír Kren
Journal:  Biotechnol Adv       Date:  2010-05-09       Impact factor: 14.227

7.  Oxidative cleavage of polysaccharides by monocopper enzymes depends on H2O2.

Authors:  Bastien Bissaro; Åsmund K Røhr; Gerdt Müller; Piotr Chylenski; Morten Skaugen; Zarah Forsberg; Svein J Horn; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  Nat Chem Biol       Date:  2017-08-28       Impact factor: 15.040

8.  New aspects of the extraction of chitin from squid pens.

Authors:  Géraldine Chaussard; Alain Domard
Journal:  Biomacromolecules       Date:  2004 Mar-Apr       Impact factor: 6.988

9.  Conversion of α-chitin substrates with varying particle size and crystallinity reveals substrate preferences of the chitinases and lytic polysaccharide monooxygenase of Serratia marcescens.

Authors:  Yuko S Nakagawa; Vincent G H Eijsink; Kazuhide Totani; Gustav Vaaje-Kolstad
Journal:  J Agric Food Chem       Date:  2013-11-08       Impact factor: 5.279

10.  Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components.

Authors:  R Jason Quinlan; Matt D Sweeney; Leila Lo Leggio; Harm Otten; Jens-Christian N Poulsen; Katja Salomon Johansen; Kristian B R M Krogh; Christian Isak Jørgensen; Morten Tovborg; Annika Anthonsen; Theodora Tryfona; Clive P Walter; Paul Dupree; Feng Xu; Gideon J Davies; Paul H Walton
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

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