Literature DB >> 34117123

Unifying deterministic and stochastic ecological dynamics via a landscape-flux approach.

Li Xu1, Denis Patterson2,3, Ann Carla Staver4, Simon Asher Levin5, Jin Wang6.   

Abstract

The frequency distributions can characterize the population-potential landscape related to the stability of ecological states. We illustrate the practical utility of this approach by analyzing a forest-savanna model. Savanna and forest states coexist under certain conditions, consistent with past theoretical work and empirical observations. However, a grassland state, unseen in the corresponding deterministic model, emerges as an alternative quasi-stable state under fluctuations, providing a theoretical basis for the appearance of widespread grasslands in some empirical analyses. The ecological dynamics are determined by both the population-potential landscape gradient and the steady-state probability flux. The flux quantifies the net input/output to the ecological system and therefore the degree of nonequilibriumness. Landscape and flux together determine the transitions between stable states characterized by dominant paths and switching rates. The intrinsic potential landscape admits a Lyapunov function, which provides a quantitative measure of global stability. We find that the average flux, entropy production rate, and free energy have significant changes near bifurcations under both finite and zero fluctuation. These may provide both dynamical and thermodynamic origins of the bifurcations. We identified the variances in observed frequency time traces, fluctuations, and time irreversibility as kinematic measures for bifurcations. This framework opens the way to characterize ecological systems globally, to uncover how they change among states, and to quantify the emergence of quasi-stable states under stochastic fluctuations.

Entities:  

Keywords:  ecological system; flux; global stability; landscape

Mesh:

Year:  2021        PMID: 34117123      PMCID: PMC8214705          DOI: 10.1073/pnas.2103779118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Fluorescence correlation spectroscopy with high-order and dual-color correlation to probe nonequilibrium steady states.

Authors:  Hong Qian; Elliot L Elson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-17       Impact factor: 11.205

2.  The global extent and determinants of savanna and forest as alternative biome states.

Authors:  A Carla Staver; Sally Archibald; Simon A Levin
Journal:  Science       Date:  2011-10-14       Impact factor: 47.728

3.  Disturbance maintains alternative biome states.

Authors:  Vinícius de L Dantas; Marina Hirota; Rafael S Oliveira; Juli G Pausas
Journal:  Ecol Lett       Date:  2015-10-22       Impact factor: 9.492

4.  Exploring the Underlying Mechanisms of the Xenopus laevis Embryonic Cell Cycle.

Authors:  Kun Zhang; Jin Wang
Journal:  J Phys Chem B       Date:  2018-01-24       Impact factor: 2.991

5.  Potential landscape and flux framework of nonequilibrium networks: robustness, dissipation, and coherence of biochemical oscillations.

Authors:  Jin Wang; Li Xu; Erkang Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-21       Impact factor: 11.205

6.  Uncovering the underlying mechanism of cancer tumorigenesis and development under an immune microenvironment from global quantification of the landscape.

Authors:  Li Wenbo; Jin Wang
Journal:  J R Soc Interface       Date:  2017-06       Impact factor: 4.118

Review 7.  Anticipating critical transitions.

Authors:  Marten Scheffer; Stephen R Carpenter; Timothy M Lenton; Jordi Bascompte; William Brock; Vasilis Dakos; Johan van de Koppel; Ingrid A van de Leemput; Simon A Levin; Egbert H van Nes; Mercedes Pascual; John Vandermeer
Journal:  Science       Date:  2012-10-19       Impact factor: 47.728

8.  Uncovering the underlying physical mechanism for cancer-immunity of MHC class I diversity.

Authors:  Wenbo Li; Jin Wang
Journal:  Biochem Biophys Res Commun       Date:  2018-09-07       Impact factor: 3.575

9.  Implications of the spatial dynamics of fire spread for the bistability of savanna and forest.

Authors:  E Schertzer; A C Staver; S A Levin
Journal:  J Math Biol       Date:  2014-02-26       Impact factor: 2.259

10.  The potential and flux landscape theory of ecology.

Authors:  Li Xu; Feng Zhang; Kun Zhang; Erkang Wang; Jin Wang
Journal:  PLoS One       Date:  2014-01-30       Impact factor: 3.240

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  1 in total

Review 1.  Perspectives on the landscape and flux theory for describing emergent behaviors of the biological systems.

Authors:  Jin Wang
Journal:  J Biol Phys       Date:  2021-11-25       Impact factor: 1.365

  1 in total

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