Literature DB >> 14970342

Fluorescence correlation spectroscopy with high-order and dual-color correlation to probe nonequilibrium steady states.

Hong Qian1, Elliot L Elson.   

Abstract

In living cells, biochemical reaction networks often function in nonequilibrium steady states. Under these conditions, the networks necessarily have cyclic reaction kinetics that are maintained by sustained constant input and output, i.e., pumping. To differentiate this state from an equilibrium state without flux, we propose a microscopic method based on concentration fluctuation measurements, via fluorescence correlation spectroscopy, and statistical analyses of high-order correlations and cross correlations beyond the standard fluorescence correlation spectroscopy autocorrelation. We show that, for equilibrium systems with time reversibility, the correlation functions possess certain symmetries, the violation of which is a measure of steady-state fluxes in reaction cycles. This result demonstrates the theoretical basis for experimentally measuring reaction fluxes in a biochemical network in situ and the importance of single-molecule measurements in providing fundamental information on nonequilibrium steady-states in biochemistry.

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Year:  2004        PMID: 14970342      PMCID: PMC365705          DOI: 10.1073/pnas.0305962101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Fluorescence-intensity distribution analysis and its application in biomolecular detection technology.

Authors:  P Kask; K Palo; D Ullmann; K Gall
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Single-molecule enzymology: stochastic Michaelis-Menten kinetics.

Authors:  Hong Qian; Elliot L Elson
Journal:  Biophys Chem       Date:  2002-12-10       Impact factor: 2.352

3.  On the statistics of fluorescence correlation spectroscopy.

Authors:  H Qian
Journal:  Biophys Chem       Date:  1990-10       Impact factor: 2.352

4.  A simple theory of motor protein kinetics and energetics.

Authors:  H Qian
Journal:  Biophys Chem       Date:  1997-09-01       Impact factor: 2.352

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Authors:  I Z Steinberg
Journal:  Biopolymers       Date:  1987       Impact factor: 2.505

6.  On the analysis of high order moments of fluorescence fluctuations.

Authors:  H Qian; E L Elson
Journal:  Biophys J       Date:  1990-02       Impact factor: 4.033

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Authors:  E Di Cera; P E Phillipson; J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-08       Impact factor: 11.205

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Authors:  I Z Steinberg
Journal:  Biophys J       Date:  1986-07       Impact factor: 4.033

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Journal:  Biopolymers       Date:  1974-01       Impact factor: 2.505

Review 10.  A simple analysis of the "phosphocreatine shuttle".

Authors:  R A Meyer; H L Sweeney; M J Kushmerick
Journal:  Am J Physiol       Date:  1984-05
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  23 in total

1.  Landscape, flux, correlation, resonance, coherence, stability, and key network wirings of stochastic circadian oscillation.

Authors:  Chunhe Li; Erkang Wang; Jin Wang
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

2.  Event ordering in live-cell imaging determined from temporal cross-correlation asymmetry.

Authors:  Daniel R Sisan; Defne Yarar; Clare M Waterman; Jeffrey S Urbach
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

3.  Rapid analysis of Forster resonance energy transfer by two-color global fluorescence correlation spectroscopy: trypsin proteinase reaction.

Authors:  Christian Eggeling; Peet Kask; Dirk Winkler; Stefan Jäger
Journal:  Biophys J       Date:  2005-04-22       Impact factor: 4.033

4.  The dual-color photon counting histogram with non-ideal photodetectors.

Authors:  Lindsey N Hillesheim; Joachim D Müller
Journal:  Biophys J       Date:  2005-08-26       Impact factor: 4.033

5.  Measurement of monomer-oligomer distributions via fluorescence moment image analysis.

Authors:  Mikhail Sergeev; Santiago Costantino; Paul W Wiseman
Journal:  Biophys J       Date:  2006-08-25       Impact factor: 4.033

6.  Eddy current and coupled landscapes for nonadiabatic and nonequilibrium complex system dynamics.

Authors:  Kun Zhang; Masaki Sasai; Jin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

Review 7.  Fluorescence correlation spectroscopy: past, present, future.

Authors:  Elliot L Elson
Journal:  Biophys J       Date:  2011-12-20       Impact factor: 4.033

8.  Diffusion, transport, and cell membrane organization investigated by imaging fluorescence cross-correlation spectroscopy.

Authors:  Jagadish Sankaran; Manoj Manna; Lin Guo; Rachel Kraut; Thorsten Wohland
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

9.  Using Multiorder Time-Correlation Functions (TCFs) To Elucidate Biomolecular Reaction Pathways from Microsecond Single-Molecule Fluorescence Experiments.

Authors:  Carey Phelps; Brett Israels; Morgan C Marsh; Peter H von Hippel; Andrew H Marcus
Journal:  J Phys Chem B       Date:  2016-12-19       Impact factor: 2.991

10.  Vectorized data acquisition and fast triple-correlation integrals for Fluorescence Triple Correlation Spectroscopy.

Authors:  William K Ridgeway; David P Millar; James R Williamson
Journal:  Comput Phys Commun       Date:  2012-12-31       Impact factor: 4.390

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