Literature DB >> 34108721

A base-pair view of interactions between genes and their enhancers.

Anne van Schoonhoven, Ralph Stadhouders.   

Abstract

Keywords:  Biotechnology; Genomics

Year:  2021        PMID： 34108721     DOI： 10.1038/d41586-021-01494-x

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  15 in total

Review 1.  A decade of 3C technologies: insights into nuclear organization.

Authors:  Elzo de Wit; Wouter de Laat
Journal:  Genes Dev       Date:  2012-01-01       Impact factor: 11.361

Review 2.  Topology of mammalian developmental enhancers and their regulatory landscapes.

Authors:  Wouter de Laat; Denis Duboule
Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

Review 3.  Organization and function of the 3D genome.

Authors:  Boyan Bonev; Giacomo Cavalli
Journal:  Nat Rev Genet       Date:  2016-10-14       Impact factor: 53.242

Review 4.  Developmental enhancers and chromosome topology.

Authors:  Eileen E M Furlong; Michael Levine
Journal:  Science       Date:  2018-09-28       Impact factor: 47.728

Review 5.  The Human Transcription Factors.

Authors:  Samuel A Lambert; Arttu Jolma; Laura F Campitelli; Pratyush K Das; Yimeng Yin; Mihai Albu; Xiaoting Chen; Jussi Taipale; Timothy R Hughes; Matthew T Weirauch
Journal:  Cell       Date:  2018-02-08       Impact factor: 41.582

Review 6.  Long-range enhancer-promoter contacts in gene expression control.

Authors:  Stefan Schoenfelder; Peter Fraser
Journal:  Nat Rev Genet       Date:  2019-08       Impact factor: 53.242

Review 7.  Transcription factors and 3D genome conformation in cell-fate decisions.

Authors:  Ralph Stadhouders; Guillaume J Filion; Thomas Graf
Journal:  Nature       Date:  2019-05-15       Impact factor: 49.962

8.  Multiplexed analysis of chromosome conformation at vastly improved sensitivity.

Authors:  James O J Davies; Jelena M Telenius; Simon J McGowan; Nigel A Roberts; Stephen Taylor; Douglas R Higgs; Jim R Hughes
Journal:  Nat Methods       Date:  2015-11-23       Impact factor: 28.547

9.  Expanded encyclopaedias of DNA elements in the human and mouse genomes.

Authors:  Jill E Moore; Michael J Purcaro; Henry E Pratt; Charles B Epstein; Noam Shoresh; Jessika Adrian; Trupti Kawli; Carrie A Davis; Alexander Dobin; Rajinder Kaul; Jessica Halow; Eric L Van Nostrand; Peter Freese; David U Gorkin; Yin Shen; Yupeng He; Mark Mackiewicz; Florencia Pauli-Behn; Brian A Williams; Ali Mortazavi; Cheryl A Keller; Xiao-Ou Zhang; Shaimae I Elhajjajy; Jack Huey; Diane E Dickel; Valentina Snetkova; Xintao Wei; Xiaofeng Wang; Juan Carlos Rivera-Mulia; Joel Rozowsky; Jing Zhang; Surya B Chhetri; Jialing Zhang; Alec Victorsen; Kevin P White; Axel Visel; Gene W Yeo; Christopher B Burge; Eric Lécuyer; David M Gilbert; Job Dekker; John Rinn; Eric M Mendenhall; Joseph R Ecker; Manolis Kellis; Robert J Klein; William S Noble; Anshul Kundaje; Roderic Guigó; Peggy J Farnham; J Michael Cherry; Richard M Myers; Bing Ren; Brenton R Graveley; Mark B Gerstein; Len A Pennacchio; Michael P Snyder; Bradley E Bernstein; Barbara Wold; Ross C Hardison; Thomas R Gingeras; John A Stamatoyannopoulos; Zhiping Weng
Journal:  Nature       Date:  2020-07-29       Impact factor: 69.504

10.  Emerging Evidence of Chromosome Folding by Loop Extrusion.

Authors:  Geoffrey Fudenberg; Nezar Abdennur; Maxim Imakaev; Anton Goloborodko; Leonid A Mirny
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2018-05-04
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  1 in total

Review 1.  Three-dimensional genome organization in immune cell fate and function.

Authors:  Sergi Cuartero; Grégoire Stik; Ralph Stadhouders
Journal:  Nat Rev Immunol       Date:  2022-09-20       Impact factor: 108.555
  1 in total

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