| Literature DB >> 34093750 |
Huixiang Tian1,2, Yueqin Li3, Jie Mei2, Lei Cao1,2, Jiye Yin2, Zhaoqian Liu2, Juan Chen1, Xiangping Li1,2.
Abstract
Lung adenocarcinoma is the most common subtype of non-small cell lung carcinoma. Tanshinone I is an important fat-soluble component in the extract of Salvia miltiorrhiza that has been reported to inhibit lung adenocarcinoma cell proliferation. However, no studies have clearly demonstrated changes in lung adenocarcinoma gene expression and signaling pathway enrichment following Tanshinone I treatment. And it remains unclear whether salvianolate has an effect on lung adenocarcinoma. The present study downloaded the GSE9315 dataset from the Gene Expression Omnibus database to identify differentially expressed genes (DEGs) and the underlying signaling pathways involved after Tanshinone I administration in the lung adenocarcinoma cell line CL1-5. The results revealed that there were 28 and 102 DEGs in the low dosage group (0.01 and 0.10 µg/ml Tanshinone I) and medium dosage groups (1 and 10 µg/ml Tanshinone I), respectively. In the low dosage group, DEGs were mainly enriched in 'positive regulation of T-helper cell differentiation' and 'protein complex'. In the medium dosage group, 102 DEGs were enriched in 'MAPK cascade' and 'extracellular exosome'. Kyoto Encyclopedia of Genes and Genomes pathway analysis demonstrated enrichment of both groups in the PI3K-Akt signaling pathway. Furthermore, there were nine overlapping DEGs [ADP ribosylation factor-interacting protein 2, chemokine (C-X-C motif) ligand 6, SH2 domain-containing adaptor protein B, Src homology 2 domain-containing transforming protein1, collagen type VI α1 chain, elastin, integrin subunit α, endoplasmic reticulum mannosyl-oligosaccharide 1,2-α-mannosidase and sterile α motif domain-containing 9 like] between the two groups, which serve to be potential targets for the treatment of lung adenocarcinoma. The present study also investigated the possible effects of salvianolate on lung adenocarcinoma in vivo using nude mouse xenograft models injected with the A549 cell line. The data revealed that salvianolate not only suppressed lung adenocarcinoma tumor growth of in nude mice, but also downregulated the expression levels of ATP7A and ATP7B, which are important proteins in the tumorigenesis and chemotherapy of lung adenocarcinoma. The present study provided evidence for the potential use of Salvia miltiorrhiza extract for treating lung adenocarcinomas in the clinic. Copyright: © Tian et al.Entities:
Keywords: anticancer effect; differentially expressed genes; lung adenocarcinoma; salvianolate; tanshinone I
Year: 2021 PMID: 34093750 PMCID: PMC8170645 DOI: 10.3892/etm.2021.10226
Source DB: PubMed Journal: Exp Ther Med ISSN: 1792-0981 Impact factor: 2.447
Differentially expressed genes identified in the different dosage groups.
| Groups | Gene symbol |
|---|---|
| Low dosage | TMEM41B, EVI1, CD9, GNG11, IFNAR2, RPS27L, PTGS2, ITGA2, CTNNB1, MYB, ID4, CAV2, MTHFS, CDKN1B, S100A8, IL18, MMP1, AOF1, MMP7, MAN1B1, SHB, ELN, SHC1, COL6A1, ACTG2, ARFIP2, CXCL6, SAMD9L |
| Medium dosage | MAN1B1, ELN, NRP2, CDK9, NR1D1, NME3, PPIL2, FXN, SYT1, PCDHGC3, CACNA2D2, TMEM115, EIF4E2, SAMD9L, MTA1, ARFIP2, HYAL1, NOS3, MAPK1, C9orf164, SLC25A1, CFB, PAFAH1B3, CDK2AP2, TXLNA, FLI1, RBBP4, NBL1, RNF4, NR5A2, ERBB2, NCSTN, HLF, MARS, AK1, NAPA, SHC1, NEFL, MEN1, CD44, FGB, EIF3S4, TPM1, EPHX1, TIMP2, CSNK2B, TP53, CTSD, MUC1, EFNA1, FRAP1, RAB8A, ARFIP2, HMGCL, KRAS, GRN, ERBB2, CALM3, BAX, SLC25A38, FCGRT, ANXA4, BMP1, PLAU, RNF167, MYH9, ISG20, IGBP1, EMP2, NR4A1, ARMET, STAT1, LMAN2L, ANGPT1, MRPL23, TLR2, MAP2K3, SEPHS2, BCAT2, STC1, MRPL37, CD44, COL6A1, COL4A2, LAMB1, CXCL6, TM7SF2, DECR2, PPP2R5B, CKS1B, SHB, CCND3, SMAD2, JUNB, ITGA2, GNB1, IFITM1, EIF3S6, PITPNA, CHD8, CTDSP2, FDFT1 |
Figure 1Venn diagram and heatmaps of DEGs in the different groups. (A) Venn diagram shows that there were nine overlapping DEGs in the low and middle dosage group, which contains 19 and 93 DEGs, respectively. Heatmap of DEGs (B) in the low dosage and (C) the medium dosage group. (D) Heatmap of the overlapping DEGs in the low and medium dosage groups. Red and green represent up- and downregulation of gene expression, respectively. DEGs, differentially expressed genes; Tan I, tanshinone I.
GO functional enrichment and KEGG and Genomes pathway analysis of overlapping genes in the low and medium dosage groups.
| Gene symbol | Category | ID | Description |
|---|---|---|---|
| ARFIP2 | BP | GO:0006928 | Movement of cell or subcellular component |
| BP | GO:0007264 | Small GTPase mediated signal transduction | |
| CC | GO:0001726 | Ruffle | |
| CC | GO:0005737 | Cytoplasm | |
| MF | GO:0005515 | Protein binding | |
| MF | GO:0005525 | GTP binding | |
| KEGG_PATHWAY | / | / | |
| CXCL6 | BP | GO:0002446 | Neutrophil mediated immunity |
| BP | GO:0002690 | Positive regulation of leukocyte chemotaxis | |
| CC | GO:0005576 | Extracellular region | |
| CC | GO:0005615 | Extracellular space | |
| MF | GO:0008009 | Chemokine activity | |
| MF | GO:0008201 | Heparin binding | |
| KEGG_PATHWAY | hsa04060 | Cytokine-cytokine receptor interaction | |
| SHB | BP | GO:0001525 | Angiogenesis |
| BP | GO:0006469 | Negative regulation of protein kinase activity | |
| CC | GO:0005829 | Cytosol | |
| CC | GO:0005886 | Plasma membrane | |
| MF | GO:0001948 | Glycoprotein binding | |
| MF | GO:0005070 | SH3/SH2 adaptor activity | |
| KEGG_PATHWAY | / | / | |
| SHC1 | BP | GO:0000165 | MAPK cascade |
| BP | GO:0000187 | Activation of MAPK activity | |
| CC | GO:0005622 | Intracellular | |
| CC | GO:0005759 | Mitochondrial matrix | |
| MF | GO:0005068 | Transmembrane receptor protein tyrosine kinase adaptor activity | |
| MF | GO:0005088 | Ras guanyl-nucleotide exchange factor activity | |
| KEGG_PATHWAY | hsa04012 | Erbb signaling pathway | |
| COL6A1 | BP | GO:0001649 | Osteoblast differentiation |
| BP | GO:0007155 | Cell adhesion | |
| CC | GO:0005576 | Extracellular region | |
| CC | GO:0005581 | Collagen trimer | |
| MF | GO:0048407 | Platelet-derived growth factor binding | |
| KEGG_PATHWAY | hsa04151 | PI3K-Akt signaling pathway | |
| ELN | BP | GO:0007519 | Skeletal muscle tissue development |
| BP | GO:0007585 | Respiratory gaseous exchange | |
| CC | GO:0005576 | Extracellular region | |
| CC | GO:0005578 | Proteinaceous extracellular matrix | |
| MF | GO:0005201 | Extracellular matrix structural constituent | |
| MF | GO:0005515 | Protein binding | |
| KEGG_PATHWAY | hsa04974 | Protein digestion and absorption | |
| ITGA2 | BP | GO:0001666 | Response to hypoxia |
| BP | GO:0002687 | Positive regulation of leukocyte migration | |
| CC | GO:0005634 | Nucleus | |
| CC | GO:0005886 | Plasma membrane | |
| MF | GO:0001618 | Virus receptor activity | |
| MF | GO:0005178 | Integrin binding | |
| KEGG_PATHWAY | hsa04145 | Phagosome | |
| MAN1B1 | BP | GO:0006491 | N-glycan processing |
| BP | GO:0008152 | Metabolic process | |
| CC | GO:0005783 | Endoplasmic reticulum | |
| CC | GO:0005789 | Endoplasmic reticulum membrane | |
| MF | GO:0004559 | Alpha-mannosidase activity | |
| MF | GO:0004571 | Mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | |
| KEGG_PATHWAY | hsa00510 | N-Glycan biosynthesis | |
| SAMD9L | BP | GO:0034058 | Endosomal vesicle fusion |
| CC | GO:0005769 | Early endosome | |
| MF | / | / | |
| KEGG_PATHWAY | / | / |
BP, biological processes; CC, cellular components; MF, molecular function; GO, Gene Ontology; KEGG, Kyoto Encyclopedia of Genes.
Figure 2GO and KEGG pathway enrichment analysis in the low and medium dosage groups. GO enrichment analysis in the (A) low dosage and (B) medium dosage groups, and KEGG pathway enrichment analysis in the (C) low dosage and (D) medium dosage groups were performed using Database for Annotation, Visualization and Integrated Discovery, before being visualized using RStudio. GO, Gene Ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes.
Figure 3PPI network and module analysis in the different dosage groups. PPI network of differentially expressed genes in the (A) low dosage and (B) medium dosage group were constructed using the Search Tool for the Retrieval of Interacting Genes/Proteins database. (C) A key module in the low dosage group and (D) two modules in the medium dosage group were identified using MCODE in the Cytoscape software. PPI, protein-protein interaction.
Figure 4Salvianolate suppresses lung carcinoma xenograft tumor growth. (A) Compared with the control group, salvianolate significantly restricted the growth of tumors 10, 13 and 16 days. (B) All three dosages of salvianolate increased the tumor inhibition rate, among which salvianolate (50 mg/kg) conferred the highest inhibition rate. (C) The tumor sections in the various groups were analyzed using hematoxylin and eosin staining (magnification, x400). Red arrows indicate nuclear pyknosis and fragmentation. *P<0.05, **P<0.01, ***P<0.001 and ****P<0.0001 vs. Control group.
Figure 5Expression levels of ATP7A and ATP7B are decreased following salvianolate administration. (A) Representative images of immunohistochemical staining for ATP7A and ATP7B expression on tumor tissues from the nude mice (magnification, x400). (B) Integral optical densities of ATP7A and ATP7B were analyzed. *P<0.05 and **P<0.01. ATP7, ATPase copper transporting.