| Literature DB >> 34093041 |
Weihong Lin1, Zuopeng Wang1, Jing Wang1, Hanlei Yan1, Qilei Han1, Wei Yao1, Kai Li1.
Abstract
OBJECTIVE: The roles of circRNAs in neuroblastoma (NB) are unclear. We used next-generation sequencing to detect the circRNA expression profiles in NB to identify the key circRNAs and analyzed the relationships between the circRNAs and clinical features.Entities:
Keywords: circRNA; circRNA-TBC1D4; miR-21; neuroblastoma
Year: 2021 PMID: 34093041 PMCID: PMC8168971 DOI: 10.2147/CMAR.S297316
Source DB: PubMed Journal: Cancer Manag Res ISSN: 1179-1322 Impact factor: 3.989
Clinical Information for Five Paired Neuroblastoma Samples Used for circRNA Sequencing
| Patients | Age | Gender | INSS Stage | Risk Group | FH/UH | MYCN Status | Size | LDH | NSE | SF |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 9 months | Male | I | Low | FH | NA | 33*24*31mm | 469 | 37.3 | 205 |
| 2 | 3 months | Female | I | Low | FH | NA | 33*33*32mm | 343 | 20.8 | 108 |
| 3 | 6 months | Male | IVs | Inter | FH | NA | 22*20*18mm | 250 | 24.3 | 228 |
| 4 | 3 months | Male | IVs | Inter | FH | NA | 43*42*31mm | 479 | 73.3 | 51 |
| 5 | 2 months | Female | I | Low | FH | NA | 41*39*29mm | 581 | 19.5 | 285 |
Notes: The normal value of LDH is from 180 to 430 IU/L; the normal value of NSE is less than 16.3 ng/mL; the normal value of SF is from 26.08 to 287.63 ng/mL.
Abbreviations: INSS, International Neuroblastoma Staging System; Inter, intermediate; FH, favorable histology group; UH, unfavorable histology group; NA, not amplified; LDH, lactate dehydrogenase; NSE, neuron specific enolase; SF, serum ferritin.
Figure 1(A) Volcano plot showing dysregulated circRNAs between neuroblastoma specimens and adjacent normal fetal adrenal medulla. The X-axis represents log2FoldChange, and the Y-axis represents -log10P value. The horizontal gray line indicates a P value of 0.05. The two vertical gray lines indicate a fold increase or decrease of 2 (left, log2FoldChange = −1; right, log2FoldChange = 1). The red and gray points represent significantly up-regulated (n = 2462) and down-regulated (n = 2242) circRNAs in neuroblastoma, respectively. (B) Hierarchical clustering of the dysregulated circRNAs in neuroblastoma specimens and adjacent normal fetal adrenal medulla. Each red or blue bar represents higher or lower expression of circRNA in each specimen. The circRNA expression patterns were distinguishable between the neuroblastoma group and the adjacent normal fetal adrenal medulla group, but similar within the same group. (C) Functional annotation of the host genes of differentially expressed circRNAs, conducted on the basis of gene ontology (GO) analyses. The X-axis represents the GO terms, and the Y-axis represents -log10Pvalue. The green, blue and red bars represent the top ten significantly enriched GO terms in biological processes, cellular components and molecular functions. (D) Bulb map of KEGG pathway analysis for the host genes of differentially expressed circRNAs. The X-axis represents enrichment score, and the Y-axis represents the top 20 enriched pathways. The size of each bulb represents the number of enriched dysregulated circRNAs, and the P values are represented by a color scale.
Figure 2Real-time qRT–PCR comparison of the relative expression (normalized to GAPDH) of 22 selected circRNAs in 20 paired neuroblastoma specimens and adjacent normal fetal adrenal medulla. Student t-test P values are shown in the figure. (A) Among ten selected highly up-regulated circRNAs from circRNA-seq, eight were confirmed to be significantly up-regulated in neuroblastoma, with P < 0.05. (B) Among five selected highly down-regulated circRNAs from circRNA-seq, two were confirmed to be significantly down-regulated in neuroblastoma, with P < 0.05. (C) Among seven selected miR-21 related circRNAs from circRNA-seq, three were confirmed to be significantly down-regulated in neuroblastoma, with P < 0.05.
Figure 3Binding sites between miR-21 and (A) circRNA-TBC1D4, (B) circRNA-NAALAD2 and (C) circRNA-TGFBR3.
Correlations of Fold Decreases Among circRNA-TBC1D4, circRNA-NAALAD2, circRNA-TGFBR3 and Clinical Features in 20 Patients
| CircRNA-TBC1D4 | CircRNA-NAALAD2 | CircRNA-TGFBR3 | Age | INSS Stage | Risk Group | FH/UH | MYCN Status | LDH | NSE | SF | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| CircRNA-TBC1D4 | / | ||||||||||
| CircRNA-NAALAD2 | / | ||||||||||
| CircRNA-TGFBR3 | / |
Notes: Continuous variables: fold decrease in circRNA-TBC1D4, circRNA-NAALAD2, and circRNA-TGFBR3, age, LDH, NSE and SF; categorical variables: INSS stage (I, II, IVs and III, IV), risk group (low, intermediate, high), FU/UH, MYCN status (amplified or not).
Abbreviations: INSS, International Neuroblastoma Staging System; FH, favorable histology group; UH, unfavorable histology group.
Figure 4Overexpression of circRNA-TBC1D4 inhibited SH-SY5Y cell migration, but not proliferation and colony-formation. (A) SH-SY5Y cells were infected with lentivirus LV18-circTBC1D4 and LV18NC. qRT-PCR was conducted to detect circRNA-TBC1D4 levels. The bar graph showed that circRNA-TBC1D4 level of SH-SY5Y infected with LV18-circTBC1D4 was significantly higher than SH-SY5Y infected with LV18NC. (B) CCK-8 assay of SH-SY5Y with circRNA-TBC1D4 overexpression and NC on the indicated days. The growth curve showed that overexpression of circRNA-TBC1D4 did not inhibit the proliferation of SH-SY5Y cells. There is no significant difference between SH-SY5Y with circRNA-TBC1D4 overexpression and NC. (C) Colony formation assays of SH-SY5Y with circRNA-TBC1D4 overexpression and NC. The left panel visually showed that overexpression of circNRA-TBC1D4 did not inhibit the colony-forming ability of SH-SY5Y cells. And the bar graph showed that there was no significant difference between SH-SY5Y with circRNA-TBC1D4 overexpression and NC. (D) Transwell migration assay of SH-SY5Y with circRNA-TBC1D4 overexpression and NC. The left panel visually showed that overexpression of circNRA-TBC1D4 significantly inhibited the migration ability of SH-SY5Y cells. The bar graph showed that there was significant difference between SH-SY5Y with circRNA-TBC1D4 overexpression and NC. Data are shown as means ± s.d. of at least three independent experiments. ****P < 0.0001; ns, P > 0.05.