Literature DB >> 34086078

Fluviispira sanaruensis sp., nov., Isolated from a Brackish Lake in Hamamatsu, Japan.

Yoshiaki Maejima1, Takao Iino2, Ryota Moriuchi3, Koya Kushimoto1, Yusuke Muraguchi1, Kohei Fukuda4, Hideaki Nojiri5, Moriya Ohkuma2, Hideo Dohra3, Kazuhide Kimbara1, Masaki Shintani6,7,8,9.   

Abstract

Strain RF1110005T, which was isolated from brackish lake water sampled at Lake Sanaru in Japan as a "filterable" bacterial strain, was characterized as a novel species in the genus Fluviispira, family Silvanigrellaceae, order Silvanigrellales, the class Oligoflexia and the phylum Bdellovibrionota. Cells of RF1110005T were aerobic, Gram stain negative, and show a pleomorphic morphology of spiral, filamentous and rod shapes. Catalase reaction was positive. Strain RF1110005T grew optimally at 30 °C, pH 7.0-8.0 and 0.5% NaCl (w/v). The major polar lipids in RF1110005T were phosphatidylethanolamine and phosphatidylglycerol. The predominant cellular fatty acids were iso-C15:0 and anteiso-C15:0. Phylogenetic analysis based on 16S rRNA gene sequences and concatenates of core gene sequence showed that the nearest neighbor of strain RF1110005T was Fluviispira multicolorata strain 33A1-SZDPT with 98.4% 16S rRNA gene sequence similarity. The genome size of strain RF1110005T was 3.5 Mbp with two plasmids (80 kb and 69 kb), and the G + C content was 33.7 mol%. Comparisons with genome-wide analyses and chemotaxonomic characters clearly showed that strain RF1110005T differed from F. multicolorata. Therefore, a novel species in Fluviispira sanaruensis, sp. nov., is proposed for strain RF1110005T (= JCM 31447 T = LMG 30360 T).

Entities:  

Year:  2021        PMID: 34086078     DOI: 10.1007/s00284-021-02561-2

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  6 in total

1.  Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities.

Authors:  David W Waite; Maria Chuvochina; Claus Pelikan; Donovan H Parks; Pelin Yilmaz; Michael Wagner; Alexander Loy; Takeshi Naganuma; Ryosuke Nakai; William B Whitman; Martin W Hahn; Jan Kuever; Philip Hugenholtz
Journal:  Int J Syst Evol Microbiol       Date:  2020-11-05       Impact factor: 2.747

2.  Structural basis of different substrate preferences of two old yellow enzymes from yeasts in the asymmetric reduction of enone compounds.

Authors:  Shoichiro Horita; Michihiko Kataoka; Nahoko Kitamura; Takuya Miyakawa; Jun Ohtsuka; Yuko Maejima; Kenju Shimomura; Koji Nagata; Sakayu Shimizu; Masaru Tanokura
Journal:  Biosci Biotechnol Biochem       Date:  2018-11-16       Impact factor: 2.043

3.  Streptomyces typhae sp. nov., a novel endophytic actinomycete with antifungal activity isolated the root of cattail (Typha angustifolia L.).

Authors:  Chenghui Peng; Xiaoxin Zhuang; Congting Gao; Zhiyan Wang; Junwei Zhao; Sheng-Xiong Huang; Chongxi Liu; Wensheng Xiang
Journal:  Antonie Van Leeuwenhoek       Date:  2021-03-27       Impact factor: 2.271

4.  Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

Authors:  K Tamura; M Nei
Journal:  Mol Biol Evol       Date:  1993-05       Impact factor: 16.240

5.  Bacterium Lacking a Known Gene for Retinal Biosynthesis Constructs Functional Rhodopsins.

Authors:  Yu Nakajima; Keiichi Kojima; Yuichiro Kashiyama; Satoko Doi; Ryosuke Nakai; Yuki Sudo; Kazuhiro Kogure; Susumu Yoshizawa
Journal:  Microbes Environ       Date:  2020       Impact factor: 2.912

6.  GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.

Authors:  Pierre-Alain Chaumeil; Aaron J Mussig; Philip Hugenholtz; Donovan H Parks
Journal:  Bioinformatics       Date:  2019-11-15       Impact factor: 6.937

  6 in total

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