Jie Dong1, Hong-De An2, Ze-Kun Yue3, Sheng-Li Hou1, Yao Chen2, Zhen-Jie Zhang1, Peng Cheng1, Qian Peng3, Bin Zhao1. 1. Key Laboratory of Advanced Energy Material Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China. 2. State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy, Nankai University, Tianjin 300353, China. 3. State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.
Abstract
Selective dephosphorylation is full of great challenges in the field of biomimetic catalysis. To mimic the active sites of protein phosphatase, Hf-OH-Hf motif-containing metal-organic frameworks (MOFs) were obtained and structurally characterized, which are assembled from [Hf48Ni6] cubic nanocages and exhibit good stability in various solvents and acid/base solutions. Catalytic investigations suggest as-synthesized Hf-Ni and Hf-Ni-NH 2 display accurate type-selectivity (selectively catalyzed P-O rather than S-O or C-O bonds) and position-selectivity (selectively catalyzed phosphomonoesters over phosphodiesters) for the hydrolysis of phosphoesters. Reaction kinetic studies further revealed the high activity of the catalytic sites in these catalysts, and the unique catalytic selectivity and high activity are comparable to phosphatase. Additionally, these MOF catalysts possess good recursivity and hypotoxicity. Control experiments (including Hf- and Zr-based isomorphous MOFs) and theoretical calculations indicate that both triplet nickel and Hf6 clusters play significant roles in the unique binding site and favorable binding energy. To our knowledge, this is the first example of selective dephosphorylation through MOF catalysts as mimic enzymes, which paves a potential way for the development of specific therapeutic MOFs.
Selective dephosphorylation is full of great challenges in the field of biomimetic catalysis. To mimic the active sites of protein phosphatase, Hf-OH-Hf motif-containing metal-organic frameworks (MOFs) were obtained and structurally characterized, which are assembled from [Hf48Ni6] cubic nanocages and exhibit good stability in various solvents and acid/base solutions. Catalytic investigations suggest as-synthesized Hf-Ni and Hf-Ni-NH 2 display accurate type-selectivity (selectively catalyzed P-O rather than S-O or C-O bonds) and position-selectivity (selectively catalyzed phosphomonoesters over phosphodiesters) for the hydrolysis of phosphoesters. Reaction kinetic studies further revealed the high activity of the catalytic sites in these catalysts, and the unique catalytic selectivity and high activity are comparable to phosphatase. Additionally, these MOF catalysts possess good recursivity and hypotoxicity. Control experiments (including Hf- and Zr-based isomorphous MOFs) and theoretical calculations indicate that both triplet nickel and Hf6 clusters play significant roles in the unique binding site and favorable binding energy. To our knowledge, this is the first example of selective dephosphorylation through MOF catalysts as mimic enzymes, which paves a potential way for the development of specific therapeutic MOFs.
Phosphatase,
a kind of important zinc-containing metalloprotein
(Scheme S1a), not only serves in the hydrolysis
of organophosphorus compounds such as pesticides and nerve agents[1,2] but also selectively regulates the phosphorylation of biomolecules
in vivo,[3] in which abnormal hyperphosphorylation
is closely related to a wide range of human diseases such as Alzheimer’s
disease[4] and lung cancer.[5] However, some inherent drawbacks of enzymes, such as low
stability, high cost, and difficulties in recycling, seriously impede
advances in such fields. Therefore, it is important to develop a simulated
phosphatase overcoming the deficiencies of natural phosphatase based
on an understanding of its structure and mechanism.[6,7] To
overcome the technique limitations and inherent complexity of natural
enzymes,[8,9] biomimetic investigations on phosphatase
as one of the effective strategies were extensively carried out, and
up to now, some outstanding results associated with mimicking phosphatase
have been reported. For example, Bera’s group synthesized three
tetranuclear iron(III) and zinc(II) complexes with phosphatase-like
activity using a model substrate of bis(p-nitrophenyl)
phosphate (BNPP);[11] Hupp and Farha used
UiO-66 to hydrolyze nerve agents (phosphate-based compounds).[10] However, the control and design of catalytic
selectivity for the obtained biomimetic compounds remain unsolved.High catalytic selectivity is indeed an important character of
natural enzymes. In phosphatase, the Zn-OH-Zn motif serves as a catalytic
active site (Scheme S1b), and the catalytic
selectivity is considered to mainly originate from a magnesium ion
in the third metal site.[12] Inspired by
the structure–activity relationship of phosphatase, we propose
to design Hf-OH-Hf motif-containing heterometallic metal–organic
frameworks (MOFs) for mimicking phosphatase to explore the catalytic
selectivity based on the following considerations: (1) MOFs are inherently
suitable for biomimetic studies of metalloproteins since MOFs can
provide fine-tunable structures for judiciously introducing catalytic
sites with atomically composed organic linkers and metal ions/clusters.[13−17] (2) The Hf-OH-Hf motifs are similar to the Zn-OH-Zn active site
in phosphatase, making it possible to serve as a biomimetic catalyst
for the hydrolysis of phosphosubstrates.[10] (3) The Lewis acidic nature[18,19] and low toxicity of
Hf(IV) centers help to promote the hydrolysis of phosphate esters
and be applied in biology.[20] (4) Strong
Hf–O bonds result in exceptional thermal and chemical stability
of Hf-MOFs, which allows Hf-MOFs catalysts to be reused in reactions.[21−31] (5) Some transition metal complexes[32−37] were
reported to significantly hydrolyze phosphate ester bonds in nerve
agents, and the introduction of transition metal and Hf-OH-Hf motifs
into MOFs maybe produces catalytic synergistic effects, which can
provide a promising method to control the catalytic activity and/or
enhance the catalytic selectivity.With this
idea in mind, here we designed and synthesized two heterometallic
Hf6-containing networks {Hf6(μ3-O)4(μ3-OH)4Ni3(L)12Cl6} (L =
isonicotinic acid (Hf–Ni); 3-aminoisonicotinic
acid (Hf–Ni–NH)) by rationally regulating the organic linker. Both of them possess
robust three-dimensional frameworks with ftw topology
(Figure S1) and are assembled by [Hf48Ni6] cubic nanocages. Hf–Ni and Hf–Ni–NH feature superior stability in various solvents and acid/base solutions.
With a biomimetic strategy, their catalytic activity and selectivity
mimicking phosphatase in dephosphorylation were systematically investigated.
The results reveal that, even when compared to their enzyme counterparts,
these heterometallic MOFs possess excellent catalytic activity and
accurate catalytic dual-selectivity for p-NPP among diverse substrates,
which contain various types of chemical bonds (p-NPA, p-NPS) and different
substitutional positions (BNPP). Control experiments and theoretical
calculations indicate that both triplet nickel and Hf-MOF played significant
roles in the unique binding site and favorable binding energies, which
are in good agreement with the observed reactivity and selectivity.
For the first time, this work realizes the biomimetic catalysis with
catalytic dual-selectivity by a MOF platform, which will facilitate
the understanding of natural biocatalytic systems and provide a new
route for the design of specific biomimetic materials.
Results and Discussion
These MOFs were harvested from the
reaction of isonicotinic/3-aminoisonicotinic
acid, HfCl4, and Ni(NO3)2 in a DMF
solvent system with acetic acid at 100 °C. Crystallographic analyses
revealed they are isomorphous,[38] which
also can be verified by powder X-ray diffraction (PXRD, Figure S2). Hf–Ni was selected
as a representative example to describe the structure. Single-crystal
X-ray diffraction studies indicate that compound Hf–Ni crystallizes in cubic space group Pm3m with unit cell a = b = c = 15.2592(6) Å. Each Hf(IV) ion is coordinated
by four μ3-O2-/OH– and
four carboxylic O atoms from the ligand. Six Hf(IV) ions are connected
by eight O atoms, forming an octahedral [Hf6O4(OH)4(COO)12] cluster (Figure a), in which each triangular
face is capped by one μ3-O or μ3-OH group. The Hf6 cluster with O symmetry is further coordinated by 12 carboxylates,
which empirically can increase the robustness of MOFs.[39,40] The Ni2+ ion is coordinated with two Cl– and four ligand anions, forming a porphyrin-like ligand-unit (Figure b). Eight Hf6 clusters are knitted together by six ligand-unit anions to
fabricate one cubic [Hf48Ni6] nanocage with
an outer edge length as large as ∼2.2 nm (Figure c). Every Hf6 clusters
act as one vertex of the cube, and each face is capped by one square
ligand-unit. Interestingly, each Hf6 cluster bridges 12
ligand-unit anions, and each such ligand-unit anion is surrounded
by four Hf6 clusters, resulting in the formation of the
(4,12)-connected ftw-topology frameworks (Figure d). Upon removal
of guest molecules, the corresponding solvent-accessible free volume
for Hf–Ni is estimated to be 42.6% with PLATON software.[41] A reversible
type-I isotherm for Hf–Ni was clearly exhibited
from the N2 gas adsorption at 77 K (Figure S4), confirming the permanent porosity of compound Hf–Ni. The apparent Brunauer–Emmett–Teller
surface area is estimated to be 1040 m2 g–1, and the maximum N2 sorption capability (P/P0 = 1.0) is 432.8 m3 g–1. The pore size distribution of Hf–Ni according to the desorption data further demonstrated that most
of the resultant micropores are around 0.74 nm.
Figure 1
Structures of Hf–Ni. (a) The 12-connected [Hf6O4(OH)4(COO)12] cluster
and the simplified model. (b) Ball–stick and simplified models
of the porphyrin-like ligand-unit with isonicotinic acid ligands,
Ni2+ cation, and Cl– anions. (c) Ball–stick
model of the cubic cage built from eight [Hf6O4(OH)4(COO)12] building blocks and six
ligand-unit anions. (d) Three-dimensional frameworks with ftw topology assembled by cubic nanocages. Violet cubic
blocks indicate the cavity inside the cages, and hydrogens are omitted
from the structure for clarity.
Structures of Hf–Ni. (a) The 12-connected [Hf6O4(OH)4(COO)12] cluster
and the simplified model. (b) Ball–stick and simplified models
of the porphyrin-like ligand-unit with isonicotinic acidligands,
Ni2+ cation, and Cl– anions. (c) Ball–stick
model of the cubic cage built from eight [Hf6O4(OH)4(COO)12] building blocks and six
ligand-unit anions. (d) Three-dimensional frameworks with ftw topology assembled by cubic nanocages. Violet cubic
blocks indicate the cavity inside the cages, and hydrogens are omitted
from the structure for clarity.For compound n class="Chemical">Hf–class="Chemical">pan> class="Chemical">Ni, high connectivity of the
Hf6 cluster was found to be one of the most stable building
units for MOF construction, and the high charge density (Z/r) of Hf(IV) may endow its high solvent stability
and thermostability.[42] To confirm the idea,
as-synthesized crystals of Hf–Ni were immersed
in various organic solvents and aqueous solutions of different pH
values (from pH = 1 to 13) for 6 h at room temperature, respectively.
Experimental PXRD results are very consistent with the simulated one,
indicating excellent solvent stability of Hf–Ni (Figures S5 and S6). Thermogravimetric
analysis (TGA) exhibits a weight loss of 25.5% from room temperature
to 249 °C, in accordance with the release of guest molecules.
Then, the framework begins to collapse at approximately 365 °C,
indicative of good thermal stability of compound Hf–Ni (Figure S7). Variable temperature PXRD
of Hf–Ni demonstrates that the crystal phase remains
unchanged until 200 °C (Figure S8),
further confirming the high thermal stability of Hf–Ni.
Catalytic activities of these MOFs were evaluated by monitoring
the hydrolysis of p-NPP. The formation of nitrophenol (p-NP) from
cleavage of the P–O bond in p-NPP was directly monitored using
UV/vis spectroscopy with an absorbance at 400 nm (Figure a). The catalytic conditions
were first optimized using four buffer systems (HEPES buffer, Tris-HCl
buffer, carbonate buffer, and water). (4-(2-Hydroxyethyl)-1-piperazineethanesulfonic
acid (HEPES) buffer (pH 7.4, 50 mM) exhibited the best performance
for this reaction at room temperature (Figure S11) and was applied as a default buffer in subsequent experiments.
As illustrated in Figure b, the reaction rate of Hf–Ni–NH and Hf–Ni was 263 and
194 μM h–1, respectively, showing that Hf–Ni–NH displays a
higher catalytic activity than Hf–Ni. This can
be attributed to the amino moieties acting as a base or a proton-transfer
agent to enhance the reaction rate, which is consistent with reported
results.[43] Importantly, the reaction rates
catalyzed by heterometallic MOFs were both higher than that of UiO-66(Hf) (31 μM h–1). Transition
Ni2+ ions may also have important roles during catalysis
except for the amino moieties and hafnium-bridging hydroxy ligands
(similar to the catalytic center of phosphatase). In order to verify
this assumption, two isomorphic compounds Hf–Cu and Hf–Cu–NH were obtained and structurally characterized using copper atom displaced
nickel atoms. PXRD measurements clearly indicated the isomorphic structure
of Hf–Cu, Hf–Cu–NH, Hf–Ni, and Hf–Ni–NH (Figure S2).
Interestingly, the reaction rates of Hf–Cu and Hf–Cu–NH were 55.3
and 70.6 μM h–1, which were both smaller than
that of Hf–Ni or Hf–Ni–NH, suggesting that Ni-based nodes are more
suitable than Cu for hydrolysis of phosphate ester. In addition, Zr-based
isomorphic MOFs (Figure S3) were also synthesized
and applied in this reaction, while all of them exhibited a lower
reacted efficiency than their corresponding Hf-base MOFs (Figure b), revealing the
Hf6 center as a catalytic site has a higher activity in
the dephosphorylation reaction. It is worth noting that biomimetic
catalysts of Hf-based MOFs applied in this reaction have never been
reported up to now. Furthermore, the raw material of as-synthesized
MOFs, including HIn-NH2, HIn, Ni(NO3)2, and Cu(NO3)2, had no effect on the hydrolysis
of p-NPP; only HfCl4 exhibited slight activity, but it
was far lower than that of Hf–Ni and Hf–Ni–NH (Figure S12).
These results indicate that Hf–O–Hf motifs in frameworks
are the main catalytic sites, and the 3D framework can facilitate
enhancement of the catalytic activity because the porous framework
can enrich the substrates and keep catalytic sites highly dispersed
during the reaction. In addition, Ni nodes and amino groups also have
a positive synergistic effect on this reaction based on the control
experiments of Hf–Cu, Hf–Cu–NH, Hf–Ni, and Hf–Ni–NH.
Figure 2
Catalytic activity. (a) Increase of the 4-nitrophenolate
band at
400 nm after addition of Hf–Ni to a p-NPP solution.
Inset shows the standard curve for p-NPP. (b) Hydrolysis profiles
of p-NPP in the presence of Hf–Ni, Hf–Ni–NH, Hf–Cu, Hf–Cu–NH, UiO-66(Hf), and Zr-based
isomorphic MOFs. (c) Catalysis profiles of p-NPP. Hf–Ni was removed by centrifugation at 25 min and put back at 60 min.
(d) Cycling runs of hydrolysis of p-NPP in the presence of Hf–Ni. The concentration of Hf–Ni and p-NPP was 0.2
mM and 1 mM, respectively.
Catalytic activity. (a) Increase of the 4-nitrophenolate
band at
400 nm after addition of Hf–Ni to a p-NPP solution.
Inset shows the standard curve for p-NPP. (b) Hydrolysis profiles
of p-NPP in the presence of Hf–Ni, Hf–Ni–NH, Hf–Cu, Hf–Cu–NH, UiO-66(Hf), and Zr-based
isomorphic MOFs. (c) Catalysis profiles of p-NPP. Hf–Ni was removed by centrifugation at 25 min and put back at 60 min.
(d) Cycling runs of hydrolysis of p-NPP in the presence of Hf–Ni. The concentration of Hf–Ni and p-NPP was 0.2
mM and 1 mM, respectively.Considering potential biomedical applications, the cytotoxicity
of these Hf-M-MOFs was evaluated. An MTT assay was performed using
a 3T3 cellline. The EC90 values for them were 0.4 mg/mL (Hf–Ni), 0.08 mg/mL (Hf–Cu), 0.25 mg/mL (Hf–Ni–NH), and 0.16 mg/mL (Hf–Cu–NH), respectively (Figure S13), indicating that all of these catalysts have low cytotoxicities.
Especially, Hf–Ni exhibits relatively less toxic
than Hf–Cu, Hf–Ni–NH, and Hf–Cu–NH, suggesting that coppermetal and an organic
linker with amino groups may increase the cytotoxicity, which is consistent
with a previous report.[44] It is worth noting
that Hf–Ni–NH has
a higher catalytic activity, but the cytotoxicity is much higher than Hf–Ni. Hence, Hf–Ni is more suitable
for medical applications, and Hf–Ni–NH can be applied in in vitro experiments. We also
observed neither significant density nor morphology differences of
cells upon incubation with Hf-M-MOFs for 4 h. Furthermore, results
of RBC hemolysis assays also indicated that these MOFs induced no
hemolysis in red blood cells (RBC) even at a concentration of 1 mg/mL
after 1 h incubation at room temperature (Figure S14). These results together revealed good biocompatibility
and system security of the designed Hf-M-MOFs.The nature of
the catan class="Chemical">lysis reactionclass="Chemical">pan> has also been explored. After
removal of the MOF catalyst filtered using a 220 nm syringe filter,
no reaction was observed after filtration at 30 min (Figure c). Subsequently, the reaction
restarted after putting the MOF catalyst into the reaction system
at 60 min. Furthermore, very little Hf or Ni elements in the filtered
solution were detected by inductively coupled plasma (ICP) analysis
(Table S5), which excluded the possibility
of Hf and Ni ions leaching, confirming the heterogeneous catalytic
nature of this reaction. In view of the significance of reutilization
for a heterogeneous catalyst,[45−47]Hf–Ni catalysts
were reused four times with same conditions and had slight decreas
in catalytic performance (Figure d), which was probably due to a smallloss of the solid
catalysts during the reuse process. The solid UV/vis absorption curve
and PXRD pattern after the reaction were in accordance with the original
ones (Figures S15 and S16), indicating
these catalysts still maintain integrity after catalytic cycles. Additionally,
the morphology of Hf–Ni after the reaction based
on scanning-electron microscope (SEM) measurement did not changed
much except for the appearance of slight cracks caused by stirring
(Figure S17).
Steady-state kinetics
were empn class="Chemical">loyed to further inclass="Chemical">pan>vestigate the
phosphatases-like catalytic activity and kinetic parameters of Hf–Ni. Within the range of 0.05–6 mM of p-NPP,a
typical Michaelis–Menten curve was observed (Figure ), and a Lineweaver–Burk
plot could be obtained with a nearly linear relationship (inset of Figure ), from which the
kinetic parameters Km, Kcat, and Vmax can be achieved. Km shows the substrate affinity of the enzyme,
and smaller Km value indicates a higher
enzyme affinity to substrate. Kcat represents
the maximum number of substrate molecules turned over per catalyst
molecule per unit time under optimal conditions. It can be regarded
as the optimum turnover rate, giving a direct measure of the catalytic
activity. As shown in Table S6, the values
of Vmax and Km for Hf–Ni are 1.67 × 10–3 mM min–1 and 0.23 mM, respectively. For the hydrolysis
of p-NPP, the derived Kcat of Hf–Ni catalyst was 8.34 × 10–3 min–1, which is 3.79 × 103 times higher than that of cerium
oxide nanoparticles (CeNPs) (2.20 × 10–6 min–1),[48] indicating the high
catalytic activity of Hf–Ni. Moreover, the derived Km value of 0.23 mM for Hf–Ni is lower than that of natural protein tyrosine phosphatases (PTP)
enzyme (0.38 mM),[49,50] which demonstrated a better affinity
of the substrate to Hf–Ni.
Figure 3
Steady-state kinetic
assays of Hf–Ni; inset:
double-reciprocal plots of activity of Hf–Ni.
Error bars show the standard error derived from three repeated measurements.
Steady-state kinetic
assays of n class="Chemical">Hf–class="Chemical">pan> class="Chemical">Ni; inset:
double-reciprocal plots of activity of Hf–Ni.
Error bars show the standard error derived from three repeated measurements.
Kinetic studies revean class="Chemical">led that compounclass="Chemical">pan>d Hf–Ni exhibited excellent phosphatase-like catalytic activity, while UiO-66(Hf) showed inactivity with the same conditions. The
derived Km value of Hf–Ni is lower than that of natural protein tyrosine phosphatases (PTP)
enzyme, which demonstrates that Hf–Ni has a better
affinity with the substrate. Considering the fast catalytic rate,
the diffusion of these substrates limited the complete utilization
of active centers, which shows that the actual Kcat values of catalytic centers in Hf–Ni could be even higher.[51] And the excellent
catalytic performance of Hf–Ni can be attributed
to the high density of active centers in the framework, which provides
an active site per 3053 Da. In contrast, 37 000 Da is necessary
for each active site in PTP.[52]
P–O,
S–O, and C–O bonds are three types of
important chemical bonds in vivo. Therefore, 4-nitrophenylphosphate
(p-NPP), bis(4-nitrophenyl) phosphoester (BNPP), 4-nitrophenyl acetate
(p-NPA), and 4-nitrophenyl sulfate (p-NPS) were selected as models
to explore the catalytic selectivity of Hf–Ni (Figure a). The formation
of reaction products for different substrates was also detected by
UV–vis spectra. Among all the tested reactions, Hf–Ni has an outstanding rate of 194 μM h–1 for
substrate p-NPP with a monosubstituted PO43– group (Figure b).
While for substrate BNPP containing a P–O bond with different
substitutional positions, the reaction rate is about 10 times lower
than that of p-NPP, which could be attributed to the steric hindrance
of BNPP.[53] The molecular size of BNPP is
8.60 Å × 4.28 Å × 8.60 Å, the height size
of which is larger than p-NPP molecules (8.60 Å × 4.28 Å
× 2.53 Å) but slightly smaller than the hexagonal channels
of Hf–Ni connected by 8.37 Å × 7.23
Å × 4.17 Å windows (Figure S22). The dimensional difference makes p-NPP easier to diffuse through
the channel of compound Hf–Ni, resulting in the
higher catalytic efficiency of p-NPP than BNPP. Moreover, Hf–Ni indicates almost no catalytic activity for p-NPA with the type of
C–O bond, which may originate from the different geometry of
the substrate. And for p-NPS containing a S–O bond, which has
analogously tetrahedral geometries with p-NPP,[54]Hf–Ni still has poor activity. This
could be because the hydrolysis process of p-NPP was via a fairly
compact transition state with solvent destabilization, while the hydrolysis
process of p-NPS was via a far more expansive transition state with
a much smaller solvent effect.[55] Furthermore,
the other two model substrates (p-nitrophenylbutyrate
and Tris(4-nitrophenyl)phosphate) have been employed with the catalyst Hf–Ni, and the results showed a less significant catalytic
effect (Figure S19 and Table ). These results reveal that Hf–Ni possesses accurate type-selectivity and position-selectivity,
which can not only selectively catalyze the hydrolysis of P–O
bond but can also catalyze the hydrolysis of the P–O bond with
a specific substitutional position. This phenomenon also suggested
the potential application of Hf–Ni in the field
of medicine because precisely regulating dephosphorylation of biomolecules
is an important method to treat many diseases.
Figure 4
Catalytic selectivity.
(a) Model substrates used in this research.
(b) The catalysis profiles of p-NPP, BNPP, p-NPA, p-NPS by Hf–Ni and Hf–Ni–NH. (c) The catalytic performance of Hf–Cu and Hf–Cu–NH for different
substrates. (d) The catalytic performance of HfCl4 and
Ni(NO3)2 for different substrates.
Table 1
Comparison of the Hydrolysis Rate
of Various Substrates with Hf–Ni Catalyst
Catalytic selectivity.
(a) Model substrates used in this research.
(b) The catalysis profiles of p-NPP, BNPP, p-NPA, p-NPS by Hf–Ni and Hf–Ni–NH. (c) The catalytic performance of Hf–Cu and Hf–Cu–NH for different
substrates. (d) The catalytic performance of HfCl4 and
Ni(NO3)2 for different substrates.Furthermore, several control experiments
were performed to explore
the factors for catalytic selectivity in this reaction. Ligands HIn/HIn-NH2 and Ni(NO3)2/Cu(NO3)2 were first tested and have almost no catalytic activity and
selectivity (Figure S18), proving that
individualligands or transition metal salts are ineffective for this
reaction. HfCl4 possesses a poor catalytic activity and
selectivity (Figure c), indicating Hf(IV) nodes are the main catalytic sites and exert
a positive effect on selectivity. Besides, isomorphic compounds Hf–Cu and Hf–Cu–NH also display good selectivity but lower than Hf–Ni and Hf–Ni–NH (Figure d), indicative of the important roles of coordinate nickel ions and
a three-dimensional (3D) framework for improving catalytic activity
and selectivity. Furthermore, nickel ions in the framework have positive
effects on polarizing the phosphoryl group and altering the structure
of the transition states, leading to enhancement of the catalytic
activity, which was also verified by different catalytic performances
of Zr–Ni, Zr–Cu, Zr–Ni–NH and Zr–Cu–NH. Moreover, compound Hf–Ni–NH has more obvious selectivity than Hf–Ni, proving the positive effect of the amino functional
group, which can be explained as the synergistic effects between the
amine group on the linker and the Hf6 node acting as a
proximal base and Lewis acidic center, respectively. It was also reported
that, through the formation of the H-bond between the amine and phosphate
ester, proximalaromatic amines could facilitate the delivery of phosphate
ester substrates to nearby catalytic active sites.[43] In addition, Hf–Ni is a 3D network
with ftw-topology containing mesoporous hexagonal
channels connected by 8.37 Å × 7.23 Å × 4.17 Å
windows, which allow for faster diffusion of substrate/product. All
results mentioned above mean that Hf(IV) nodes and coordinate nickel
ions, as well as amino functional groups in the 3D porous framework,
have a positive synergistic effect on this reaction. This is the first
time MOFs have been used for selective biomimetic dephosphorylation.Enzymes possess better sen class="Chemical">lectivity thanclass="Chemical">pan> conventional chemical catalysts
presumably because the geometric constraints of enzymes can accelerate
their reaction and promote the selectivity of the unique product.[56] Hereby, to understand critical factors for the
reactivity and selectivity of the Hf–Ni catalyst,
we carried out density functional theory (DFT) calculations at the
SMD-M06/6-31++G(d,p)/Lanl2dz//6-31G(d,p)/Lanl2dz level of theory without
any constraint. As shown in (Figure a-1), the computational model of complex Hf–Ni-p-NPP displays three key interactions between the substrate p-NPP and
MOF catalyst: (1) the nitryl group of the substrate coordinates to
metalNi of the catalyst, (2) a π–π stacking of
aromatic ring between the nitrophenol and isonicotinic acidligand,
(3) the phosphate group of the substrate interacts with Hf6 involving a P=O4···Hf1 interaction and an O···H hydrogen bond. Spin multiplicities
of complex Hf–Ni-p-NPP were investigated by DFT
calculations, and the calculated triplet complex is 26.0 kJ/mol more
stable than that in the singlet state (Figure a-2). For the triplet complex, most of the
spin density located on the Ni metal and pyridineligands dispersed
partialspin density (Figure b). Through the inspection of the frontier molecular orbital,
the dz2 orbital of Ni has a favorable orbital overlap with
the π orbital of the nitryl group (Figure c), and the distance of O1–Ni
is 2.38 Å. The second-order perturbative estimate shows 16.6
kJ/mol donor–acceptor interaction from lone pair electrons
of O1 to lone vacant orbital of Ni (Table S9). Because of the fully occupied dz2 orbital
of Ni rests in the singlet state, it is difficult to form axial interactions
with the nitryl group, which can be verified by the longer distance
of O1–Ni (3.95 Å) (Figure S21). Furthermore, a favorable π–π stacking of the
aromatic ring was predicted in the triplet complex between the nitrophenol
and isonicotinic acidligand with nearly parallel orientation, and
the distance between two aromatic centers is 3.43 Å, while there
is no obvious π–π stacking in the singlet complex.
Accordingly, the stronger interaction of O1–Ni and
π–π stacking jointly contribute to the superiority
of the triplet state of the Hf–Ni catalyst. The
case when Ni (triplet) was replaced with Cu (doublet) was also calculated
for comparison. And it is more stable for p-NPP to bind to Hf–Ni than to Hf–Cu (ΔΔE = 14.4 kJ/mol), which indicates the significant binding contribution
of metalNi for the catalytic reactivity (Table S10).
Figure 5
Computational analysis. (a-1) The computational model
of complex Hf–Ni-p-NPP depicted in two parts:
the square planar
ligand-unit and the Hf6 cluster unit. (a-2, a-3) There
are two possible spin multiplicities of Ni (singlet and triplet) and
one of Cu (doublet), and three possible modes of p-NPP binding to
Hf6 cluster: a, one O of p-NPP interacts
with one Hf without breaking any initial O–Hf bond; b, one O of p-NPP interacts with one Hf after breaking one
initial O–Hf bond; b + c, p-NPP bonds with
two Hf of a Hf6 cluster after the dissociation of one HCOO–. The relative energy (ΔE) and
relative binding energy (ΔΔE) are given.
(b) Spin density of Hf–Ni-p-NPP (triplet). (c)
Frontier molecular orbital of Hf–Ni-p-NPP (triplet).
(d-1) Sketch of complexes of Hf–Ni(-NH) and different model substrates. (d-2)
Correlation diagram of the length of the O4–Hf bond and the
relative binding energy (ΔΔE) after removal
of Hf–Ni-p-NPA (hollow point) for its poor correlation.
Computationan class="Chemical">l anclass="Chemical">pan>alysis. (a-1) The computational model
of complex Hf–Ni-p-NPP depicted in two parts:
the square planar
ligand-unit and the Hf6 cluster unit. (a-2, a-3) There
are two possible spin multiplicities of Ni (singlet and triplet) and
one of Cu (doublet), and three possible modes of p-NPP binding to
Hf6 cluster: a, one O of p-NPP interacts
with one Hf without breaking any initial O–Hf bond; b, one O of p-NPP interacts with one Hf after breaking one
initial O–Hf bond; b + c, p-NPP bonds with
two Hf of a Hf6 cluster after the dissociation of one HCOO–. The relative energy (ΔE) and
relative binding energy (ΔΔE) are given.
(b) Spin density of Hf–Ni-p-NPP (triplet). (c)
Frontier molecular orbital of Hf–Ni-p-NPP (triplet).
(d-1) Sketch of complexes of Hf–Ni(-NH) and different model substrates. (d-2)
Correlation diagram of the length of the O4–Hf bond and the
relative binding energy (ΔΔE) after removal
of Hf–Ni-p-NPA (hollow point) for its poor correlation.
For interactions between the phosphate group of
p-NPP and Hf6, there are three possible binding modes depending
on whether
the carboxylate of Hf6 is dissociated from the MOF complex
(mode a, b, b+c in Figure a-3).
Failure to locate the complex in mode a indicates
that one vacant binding site at least is required to form the phosphate–Hf
interaction. Moreover, during structural optimization, mode a would easily transform into the most favorable mode b that involves the interaction of P=O4···Hf1 and a hydrogen bond to stabilize
the adduct of p-NPP and Hf6. The binding energy of the
complex in mode b is 19.5 kJ/mol more stable than
that in mode b+c, suggesting that the carboxylate
group will not fully be dissociated from Hf–Ni catalyst during the binding with p-NPP. After establishing the mode
of Hf–Ni-p-NPP, we would be able to probe the
selectivity of the Hf–Ni catalyst for different
model substrates in Figure d-1 based on the calculated binding energies. The sequence
of stability for complexes in terms of different substrates is p-NPP
≫ BNPP > p-NPA > p-NPS, which supports the experimental
observation
in Figure d. As for
the amino-substituted Hf–Ni catalyst, Hf–Ni–NH, it has stronger binding ability to p-NPP
than Hf–Ni (ΔΔE =
−5.8 kJ/mol). According to the structure of different complexes,
the O4–Hf interaction seems to operate the mentioned
binding energies for varying substrates and catalysts. A good correlation
(R2 > 0.9) of relative binding energies
and O4–Hf distances reveals that the selectivity
of the Hf–Ni catalyst is highly dependent on the
binding affinity of the X-O4 and Hf (Figure d-2). Through the natural population analysis
(NPA) charge and the second-order perturbative interaction for different
model substrates (Tables S7 and S8), the
O4 atom in p-NPP exerts the strongest interaction between
O4 and Hf, which stabilizes the complex Hf–Ni-p-NPP. The introduction of -NH2 enabled the forming of the
intramolecular hydrogen bond N–H···O3, which thus improved the binding affinity of Hf–Ni–NH.Further calculations focus on the
mechanism of the hydrolysis of
p-NPP by Hf–Ni (Figure ). A triangular bipyramid transition state
was formed as a concerted O–P–O mode with the free energy
barrier, ΔG1, is 76.7 kJ/mol, and
the total thermodynamic free energy variation, ΔGrxn, is −10.5 kJ/mol. More inspections to the structure
of the transition state indicate that all of the O1–Ni,
O4–Hf, π–π stacking, and hydrogen
bonds play important roles to stabilize the transition state, supported
by the shorten distance of related atoms or functional groups, which
is in agreement with our previous discussion in Figure .
Figure 6
Mechanism of the hydrolysis process. Sketch
of essential steps
of the reaction for the hydrolysis of p-NPP on Hf–Ni, and the structure of the transition state (TS) depicting the process
of nucleophilic attack for H2O toward P.
Mechanism of the hydron class="Chemical">lysis process. Sketch
of essenclass="Chemical">pan>tial steps
of the reaction for the hydrolysis of p-NPP on Hf–Ni, and the structure of the transition state (TS) depicting the process
of nucleophilic attack for H2O toward P.
Experimental Section
Synthesis of Compound Hf–Ni
HfCl4 (64 mg), HIn (62 mg),
and Ni(NO3)2·6H2O (29 mg) were
dissolved in DMF (6 mL) and acetic acid (1.5
mL) mixture solvent while stirring. Then the starting materials were
sealed in a 20 mL glass vial. Subsequently, the resulting solution
was kept at 100 °C for 3 days and then cooled down to room temperature
at the rate of 1.5 °C per hour to acquire pale-blue cube-shaped
crystals. Then, the resulting crystals were directly washed with DMF
three times and air-dried naturally.Notes: The experimental
operation of dissolving HfClshould be conducted in a fume hood.
X-ray Crystallographic
Analyses
Data were collected
on an Oxford SuperNova (TM) CCD diffractometer with a SuperNova X-ray
source (Mo–Kα). The structures were solved and refined
using the SHELXS-97 program. Detail analysis of data
collection and refinement can be viewed in Supporting Information.
Characterization Methods
All compounds
were characterized
using general experimental techniques, such as powder X-ray diffraction,
thermogravimetry analyses, IR, XPS, and ICP. Details are provided
in Supporting Information.
General Catalytic
Procedures
The reaction was conducted
in HEPES (50 mM, pH 7.4). The concentrations of class="Chemical">pan> class="Chemical">Hf–Ni and p-NPP were 0.2 mM and 1 mM, respectively. Catalytic activity
was monitored by measuring the absorbance at 400 nm for p-nitrophenolate using a LAMBDA 950 UV/vis spectrophotometer.
Simulated
Phosphatase Activity Assays
p-Nitrophenylphosphate was used as a substrate to describe the phosphatase
mimetic activity of Hf–Ni. All parallel experiments
were conducted at least three times with triplicates. Hf–Ni (500 μM) was dispersed in HEPES buffer in advance. A 300 μL
catalyst solution was directly added to buffer in a 3 mLcuvette and
followed by the addition of various concentrations of p-NPP (0.05
mM to 6 mM). After an appropriate shaking, the reactive substance
was examined with a UV/vis spectrophotometer as quickly as possible.
Then, we obtained the data which were collected using the kinetic
mode and the plots of absorbance to time.
Cell Culture and Cytotoxicity
Assays
The cytotoxic
activity of Hf–Ni was analyzed by the MTT assay.
The cells were seeded in 96-well plates at a density of 5 × 103 cells per well and incubated overnight. The treatments were
added to the cells at different concentrations (from 3.2 mg mL–1 to 0.025 mg mL–1) and kept 4 h
at 37 °C with a 5% CO2 atmosphere. The cytotoxicity
was determined after 4 h by adding the MTT. The plates were read at
562 nm.
Hemolysis Assays
Hemolysis assays were performed as
follows: 50 μL of Hf-M-MOFs (suspended in PBS), PBS (negative
control), or Triton X-100 (positive control) are added to 450 μL
of RBC solution to form a suspension, which was incubated at room
temperature for 1 h. Then, the suspension was centrifuged at 10000g over 5 min, and the supernatant was read in a 96-well
plate at 540 nm. The % hemolysis was calculated as H (%) = (OD540 nm sample – OD540 nm PBS)/(OD540 nm Triton X-100 1% – OD540 nm PBS) × 100. Positive and negative controls induced 100% and
0% of lysis, respectively.
Computational Methods
The M06 functional
with an uclass="Chemical">pan> class="Chemical">ltrafine
integration grid was employed as implemented in the Gaussian09 code
for all of the DFT calculations. Geometry optimizations and harmonic
frequencies were obtained with the 6-31G** basis set for main-group
elements and the Lanl2dz basis set and pseudopotentials for Hf, Ni,
and Cu. To improve the accuracy, energies were further refined via
the addition of diffuse functions in the main-group basis set (6-31++G**)
and the correction of the SMD (H2O) model. A simplified
model of the Hf6 cluster was adopted in this work, including
one porphyrin-liked ligand-unit with isonicotinic acidligands, metalNi2+ (or Cu2+), and Cl–, while
other linkers to the Hf6 cluster were replaced with formate
capping ligands.
More detailed experimental procedures and the
characterization data are available as Supporting Information.
Conclusion
In summary,
two porous frameworks assembn class="Chemical">led by [class="Chemical">pan> class="Chemical">Hf48Ni6]
cubic nanocages were synthesized and structurally
characterized by regulating an organic linker, which feature high stability
in various solvents and acid/base solutions. With a biomimetic strategy,
these MOFs were used to mimic protein phosphatase for dephosphorylation,
and results revealed that both Hf–Ni and Hf–Ni–NH have excellent
type-selectivity and position-selectivity for hydrolysis of p-NPP.
Moreover, the sustainable catalysts are relatively active in mild
catalytic reactions even when compared to their enzyme counterparts
and possess good reusability as well as hypotoxicity. The reactivity
and selectivity of these catalysts were further verified by control
experiments and theoretical DFT calculations through calculated binding
energies and structural details of reaction intermediates and transition
states. For the first time, this study realizes the accurate catalytic
dual-selectivity in the MOFs system and provides valuable clues for
the design of biomimetic materials with controllable selectivity,
which also paves a possible way for the development of specific therapeutic
MOFs. Especially, establishment of biomimetic platforms with clarified
principles and tunable properties (e.g., selectivity) to probe detailed
information that cannot be facilely investigated in their natural
enzyme counterparts can greatly promote the study and applications
of this field.
Authors: Kyung Min Choi; Dohyung Kim; Bunyarat Rungtaweevoranit; Christopher A Trickett; Jesika Trese Deniz Barmanbek; Ahmad S Alshammari; Peidong Yang; Omar M Yaghi Journal: J Am Chem Soc Date: 2016-12-22 Impact factor: 15.419
Authors: Andres Alonso; Joanna Sasin; Nunzio Bottini; Ilan Friedberg; Iddo Friedberg; Andrei Osterman; Adam Godzik; Tony Hunter; Jack Dixon; Tomas Mustelin Journal: Cell Date: 2004-06-11 Impact factor: 41.582
Authors: Patrick F Muldoon; Chong Liu; Carson C Miller; S Benjamin Koby; Austin Gamble Jarvi; Tian-Yi Luo; Sunil Saxena; Michael O'Keeffe; Nathaniel L Rosi Journal: J Am Chem Soc Date: 2018-05-09 Impact factor: 15.419