Literature DB >> 34073787

The First Mitogenomes of the Subfamily Odontiinae (Lepidoptera, Crambidae) and Phylogenetic Analysis of Pyraloidea.

Mujie Qi1, Huifeng Zhao2,3, Fang Yu4, Aibing Zhang3, Houhun Li1.   

Abstract

The complete mitochondrial genomes of three species of Odontiinae were newly sequenced: Dausara latiterminalis Yoshiyasu, Heortia vitessoides (Moore), and Pseudonoorda nigropunctalis (Hampson). These circular and double-stranded mitogenomes vary from 15,084 bp to 15,237 bp in size, including 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), and 22 transfer RNA genes (tRNAs) and an A + T-rich region. The nucleotide composition indicated a strong A/T bias. Most PCGs are initiated with an ATN codon and terminated by a codon of TAR. All tRNAs could be folded into the clover-leaf structure with the exception of trnS1 (AGN), in which the dihydrouridine (DHU) arm formed a simple loop, and the motif 'ATAG' and 'ATTTA' in the A + T-rich region was also founded. The phylogenomic analyses covering Odontiinae + 11 subfamilies of Pyraloidea were conducted. Similar topologies were generated from both Bayesian inference (BI) and maximum likelihood (ML) analyses based on the nucleotide and amino acid sequence data. There was some discrepancy in the sister-group relationship of Odontiinae and Glaphyriinae, and the relationships among the subfamilies in the 'CAMMSS clade' of the Crambidae. The results of this study suggest that mitogenomic data are useful for resolving the deep-level relationships of Pyraloidea and the topologies generated from amino acid data might be more realistic and reliable. Moreover, more mitogenomic taxon sampling and larger scale analyses with more genes or a combination of mitogenomic and nuclear genes are needed to reconstruct a comprehensive framework of the pyraloid phylogeny.

Entities:  

Keywords:  Crambidae; Odontiinae; Pyraloidea; mitogenome; phylogeny

Year:  2021        PMID: 34073787     DOI: 10.3390/insects12060486

Source DB:  PubMed          Journal:  Insects        ISSN: 2075-4450            Impact factor:   2.769


  44 in total

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Authors:  Omar Rota-Stabelli; Ziheng Yang; Maximilian J Telford
Journal:  Mol Phylogenet Evol       Date:  2009-07       Impact factor: 4.286

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Authors:  Ruyue Zhang; Jing Li; Shuo Geng; Juan Yang; Xiao Zhang; Yuxin An; Cong Li; Haoran Cui; Xiaoying Li; Yuyu Wang
Journal:  Int J Biol Macromol       Date:  2020-02-01       Impact factor: 6.953

6.  The complete mitochondrial genome of the yellow peach moth Dichocrocis punctiferalis (Lepidoptera: Pyralidae).

Authors:  Qiu-Ling Wu; Ya-Jun Gong; Bao-cai Shi; Yun Gu; Shu-Jun Wei
Journal:  Mitochondrial DNA       Date:  2012-10-02

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Authors:  N T Perna; T D Kocher
Journal:  J Mol Evol       Date:  1995-09       Impact factor: 2.395

8.  The complete mitochondrial genome of Plodia interpunctella (Lepidoptera: Pyralidae) and comparison with other Pyraloidea insects.

Authors:  Qiu-Ning Liu; Xin-Yue Chai; Dan-Dan Bian; Chun-Lin Zhou; Bo-Ping Tang
Journal:  Genome       Date:  2015-11-16       Impact factor: 2.166

9.  The mitochondrial genome of booklouse, Liposcelis sculptilis (Psocoptera: Liposcelididae) and the evolutionary timescale of Liposcelis.

Authors:  Yan Shi; Qing Chu; Dan-Dan Wei; Yuan-Jian Qiu; Feng Shang; Wei Dou; Jin-Jun Wang
Journal:  Sci Rep       Date:  2016-07-29       Impact factor: 4.379

10.  Comparative Mitogenomic Analyses of Praying Mantises (Dictyoptera, Mantodea): Origin and Evolution of Unusual Intergenic Gaps.

Authors:  Hong-Li Zhang; Fei Ye
Journal:  Int J Biol Sci       Date:  2017-02-25       Impact factor: 6.580

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