Literature DB >> 34072257

Decoding LncRNAs.

Lidia Borkiewicz1, Joanna Kalafut1, Karolina Dudziak1, Alicja Przybyszewska-Podstawka1, Ilona Telejko1.   

Abstract

Non-coding RNAs (ncRNAs) have been considered as unimportant additions to the transcriptome. Yet, in light of numerous studies, it has become clear that ncRNAs play important roles in development, health and disease. Long-ignored, long non-coding RNAs (lncRNAs), ncRNAs made of more than 200 nucleotides have gained attention due to their involvement as drivers or suppressors of a myriad of tumours. The detailed understanding of some of their functions, structures and interactomes has been the result of interdisciplinary efforts, as in many cases, new methods need to be created or adapted to characterise these molecules. Unlike most reviews on lncRNAs, we summarize the achievements on lncRNA studies by taking into consideration the approaches for identification of lncRNA functions, interactomes, and structural arrangements. We also provide information about the recent data on the involvement of lncRNAs in diseases and present applications of these molecules, especially in medicine.

Entities:  

Keywords:  biomarkers; gene regulation; gene therapy; lncRNA; miRNA sponge

Year:  2021        PMID: 34072257     DOI: 10.3390/cancers13112643

Source DB:  PubMed          Journal:  Cancers (Basel)        ISSN: 2072-6694            Impact factor:   6.639


  259 in total

1.  Combined RNAi and localization for functionally dissecting long noncoding RNAs.

Authors:  Debojyoti Chakraborty; Dennis Kappei; Mirko Theis; Anja Nitzsche; Li Ding; Maciej Paszkowski-Rogacz; Vineeth Surendranath; Nicolas Berger; Herbert Schulz; Kathrin Saar; Norbert Hubner; Frank Buchholz
Journal:  Nat Methods       Date:  2012-02-12       Impact factor: 28.547

Review 2.  Molecular mechanisms of long noncoding RNAs.

Authors:  Kevin C Wang; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

3.  Nuclear lncRNA stabilization in the host response to bacterial infection.

Authors:  Mathias Munschauer; Jörg Vogel
Journal:  EMBO J       Date:  2018-06-22       Impact factor: 11.598

4.  CPPred: coding potential prediction based on the global description of RNA sequence.

Authors:  Xiaoxue Tong; Shiyong Liu
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

5.  Genome-wide measurement of RNA folding energies.

Authors:  Yue Wan; Kun Qu; Zhengqing Ouyang; Michael Kertesz; Jun Li; Robert Tibshirani; Debora L Makino; Robert C Nutter; Eran Segal; Howard Y Chang
Journal:  Mol Cell       Date:  2012-09-13       Impact factor: 17.970

Review 6.  The functional roles of exosomal long non-coding RNAs in cancer.

Authors:  Man Wang; Li Zhou; Fei Yu; Yinfeng Zhang; Peifeng Li; Kun Wang
Journal:  Cell Mol Life Sci       Date:  2019-01-25       Impact factor: 9.261

7.  Long Noncoding RNA Facilitated Gene Therapy Reduces Atherosclerosis in a Murine Model of Familial Hypercholesterolemia.

Authors:  Peter Tontonoz; Xiaohui Wu; Marius Jones; Zhengyi Zhang; David Salisbury; Tamer Sallam
Journal:  Circulation       Date:  2017-08-22       Impact factor: 29.690

8.  Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data.

Authors:  Fabian A Buske; Denis C Bauer; John S Mattick; Timothy L Bailey
Journal:  Genome Res       Date:  2012-05-01       Impact factor: 9.043

9.  hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1.

Authors:  Yoichiro Sugimoto; Alessandra Vigilante; Elodie Darbo; Alexandra Zirra; Cristina Militti; Andrea D'Ambrogio; Nicholas M Luscombe; Jernej Ule
Journal:  Nature       Date:  2015-03-18       Impact factor: 49.962

10.  Insights into the biogenesis and potential functions of exonic circular RNA.

Authors:  Chikako Ragan; Gregory J Goodall; Nikolay E Shirokikh; Thomas Preiss
Journal:  Sci Rep       Date:  2019-02-14       Impact factor: 4.379

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  9 in total

Review 1.  The Emerging Role of Long Non-Coding RNAs in Esophageal Cancer: Functions in Tumorigenesis and Clinical Implications.

Authors:  Yali Han; Guo Zhao; Xinhang Shi; Yushan Wang; Xin Wen; Lu Zhang; Xiangqian Guo
Journal:  Front Pharmacol       Date:  2022-05-13       Impact factor: 5.988

2.  Long non-coding RNA (LncRNA) CHROMR promotes the expression of the CNNM1 gene by adsorbing hsa-miR-1299 to obtain drug resistance in diffuse large B lymphoma cells.

Authors:  Mingyue Wang; Zhichao Miao; Hong Cen; Jiaxu He; Changyuan Wei
Journal:  Transl Cancer Res       Date:  2022-05       Impact factor: 0.496

3.  Detection and analysis of long noncoding RNA expression profiles related to epithelial-mesenchymal transition in keloids.

Authors:  Zhixiong Chen; Xi Chu; Jinghong Xu
Journal:  Biomed Eng Online       Date:  2022-01-11       Impact factor: 2.819

Review 4.  Bioinformatic Tools for the Analysis and Prediction of ncRNA Interactions.

Authors:  Andrés Rincón-Riveros; Duvan Morales; Josefa Antonia Rodríguez; Victoria E Villegas; Liliana López-Kleine
Journal:  Int J Mol Sci       Date:  2021-10-22       Impact factor: 5.923

Review 5.  Emerging Roles and Mechanisms of lncRNA FOXD3-AS1 in Human Diseases.

Authors:  Qinfan Yao; Xiuyuan Zhang; Dajin Chen
Journal:  Front Oncol       Date:  2022-02-25       Impact factor: 6.244

Review 6.  Molecular mechanisms and functions of pyroptosis in sepsis and sepsis-associated organ dysfunction.

Authors:  Ri Wen; Yong-Ping Liu; Xiao-Xu Tong; Tie-Ning Zhang; Ni Yang
Journal:  Front Cell Infect Microbiol       Date:  2022-07-29       Impact factor: 6.073

Review 7.  Advances of Epigenetic Biomarkers and Epigenome Editing for Early Diagnosis in Breast Cancer.

Authors:  Pourya Sarvari; Pouya Sarvari; Ivonne Ramírez-Díaz; Frouzandeh Mahjoubi; Karla Rubio
Journal:  Int J Mol Sci       Date:  2022-08-23       Impact factor: 6.208

8.  A Prognostic Ferroptosis-Related lncRNA Model Associated With Immune Infiltration in Colon Cancer.

Authors:  Jianzhong Lu; Jinhua Tan; Xiaoqing Yu
Journal:  Front Genet       Date:  2022-08-31       Impact factor: 4.772

Review 9.  The Role of lncRNA PCAT6 in Cancers.

Authors:  Siying Wang; Zhenyao Chen; Jingyao Gu; Xin Chen; Zhaoxia Wang
Journal:  Front Oncol       Date:  2021-07-13       Impact factor: 6.244

  9 in total

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