Literature DB >> 34071490

Genome-Wide Role of HSF1 in Transcriptional Regulation of Desiccation Tolerance in the Anhydrobiotic Cell Line, Pv11.

Shoko Tokumoto1, Yugo Miyata2, Ruslan Deviatiiarov3, Takahiro G Yamada4, Yusuke Hiki4, Olga Kozlova3, Yuki Yoshida5,6, Richard Cornette2, Akira Funahashi4, Elena Shagimardanova3, Oleg Gusev3,7, Takahiro Kikawada1,2.   

Abstract

The Pv11, an insect cell line established from the midge Polypedilum vanderplanki, is capable of extreme hypometabolic desiccation tolerance, so-called anhydrobiosis. We previously discovered that heat shock factor 1 (HSF1) contributes to the acquisition of desiccation tolerance by Pv11 cells, but the mechanistic details have yet to be elucidated. Here, by analyzing the gene expression profiles of newly established HSF1-knockout and -rescue cell lines, we show that HSF1 has a genome-wide effect on gene regulation in Pv11. The HSF1-knockout cells exhibit a reduced desiccation survival rate, but this is completely restored in HSF1-rescue cells. By comparing mRNA profiles of the two cell lines, we reveal that HSF1 induces anhydrobiosis-related genes, especially genes encoding late embryogenesis abundant proteins and thioredoxins, but represses a group of genes involved in basal cellular processes, thus promoting an extreme hypometabolism state in the cell. In addition, HSF1 binding motifs are enriched in the promoters of anhydrobiosis-related genes and we demonstrate binding of HSF1 to these promoters by ChIP-qPCR. Thus, HSF1 directly regulates the transcription of anhydrobiosis-related genes and consequently plays a pivotal role in the induction of anhydrobiotic ability in Pv11 cells.

Entities:  

Keywords:  CRISPR/Cas9; Polypedilum vanderplanki; anhydrobiosis; insect cell; knockout; rescue

Year:  2021        PMID: 34071490     DOI: 10.3390/ijms22115798

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  51 in total

1.  clusterProfiler: an R package for comparing biological themes among gene clusters.

Authors:  Guangchuang Yu; Li-Gen Wang; Yanyan Han; Qing-Yu He
Journal:  OMICS       Date:  2012-03-28

Review 2.  Constraints of tolerance: why are desiccation-tolerant organisms so small or rare?

Authors:  Peter Alpert
Journal:  J Exp Biol       Date:  2006-05       Impact factor: 3.312

Review 3.  STARR-seq - principles and applications.

Authors:  Felix Muerdter; Łukasz M Boryń; Cosmas D Arnold
Journal:  Genomics       Date:  2015-06-11       Impact factor: 5.736

4.  A Scalable Epitope Tagging Approach for High Throughput ChIP-Seq Analysis.

Authors:  Xiong Xiong; Yanxiao Zhang; Jian Yan; Surbhi Jain; Sora Chee; Bing Ren; Huimin Zhao
Journal:  ACS Synth Biol       Date:  2017-03-07       Impact factor: 5.110

Review 5.  The C. elegans dauer larva as a paradigm to study metabolic suppression and desiccation tolerance.

Authors:  Cihan Erkut; Teymuras V Kurzchalia
Journal:  Planta       Date:  2015-04-14       Impact factor: 4.116

6.  Establishment of gene transfer and gene silencing methods in a desiccation-tolerant cell line, Pv11.

Authors:  Yoichiro Sogame; Jun Okada; Shingo Kikuta; Yugo Miyata; Richard Cornette; Oleg Gusev; Takahiro Kikawada
Journal:  Extremophiles       Date:  2016-10-18       Impact factor: 2.395

7.  Cells from an anhydrobiotic chironomid survive almost complete desiccation.

Authors:  Yuichi Nakahara; Shigeo Imanishi; Kanako Mitsumasu; Yasushi Kanamori; Ken-ichi Iwata; Masahiko Watanabe; Takahiro Kikawada; Takashi Okuda
Journal:  Cryobiology       Date:  2009-10-20       Impact factor: 2.487

8.  Expression of heat shock protein-coding genes associated with anhydrobiosis in an African chironomid Polypedilum vanderplanki.

Authors:  Oleg Gusev; Richard Cornette; Takahiro Kikawada; Takashi Okuda
Journal:  Cell Stress Chaperones       Date:  2010-08-31       Impact factor: 3.667

9.  The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans.

Authors:  Jessica Brunquell; Stephanie Morris; Yin Lu; Feng Cheng; Sandy D Westerheide
Journal:  BMC Genomics       Date:  2016-08-05       Impact factor: 3.969

10.  C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.

Authors:  Tsukasa Kouno; Jonathan Moody; Andrew Tae-Jun Kwon; Youtaro Shibayama; Sachi Kato; Yi Huang; Michael Böttcher; Efthymios Motakis; Mickaël Mendez; Jessica Severin; Joachim Luginbühl; Imad Abugessaisa; Akira Hasegawa; Satoshi Takizawa; Takahiro Arakawa; Masaaki Furuno; Naveen Ramalingam; Jay West; Harukazu Suzuki; Takeya Kasukawa; Timo Lassmann; Chung-Chau Hon; Erik Arner; Piero Carninci; Charles Plessy; Jay W Shin
Journal:  Nat Commun       Date:  2019-01-21       Impact factor: 14.919

View more
  2 in total

1.  High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance.

Authors:  Yuki Yoshida; Nurislam Shaikhutdinov; Olga Kozlova; Masayoshi Itoh; Michihira Tagami; Mitsuyoshi Murata; Hiromi Nishiyori-Sueki; Miki Kojima-Ishiyama; Shohei Noma; Alexander Cherkasov; Guzel Gazizova; Aigul Nasibullina; Ruslan Deviatiiarov; Elena Shagimardanova; Alina Ryabova; Katsushi Yamaguchi; Takahiro Bino; Shuji Shigenobu; Shoko Tokumoto; Yugo Miyata; Richard Cornette; Takahiro G Yamada; Akira Funahashi; Masaru Tomita; Oleg Gusev; Takahiro Kikawada
Journal:  NAR Genom Bioinform       Date:  2022-04-05

2.  Identification of Genomic Safe Harbors in the Anhydrobiotic Cell Line, Pv11.

Authors:  Yugo Miyata; Shoko Tokumoto; Tomohiko Arai; Nurislam Shaikhutdinov; Ruslan Deviatiiarov; Hiroto Fuse; Natalia Gogoleva; Sofya Garushyants; Alexander Cherkasov; Alina Ryabova; Guzel Gazizova; Richard Cornette; Elena Shagimardanova; Oleg Gusev; Takahiro Kikawada
Journal:  Genes (Basel)       Date:  2022-02-24       Impact factor: 4.096

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.