| Literature DB >> 34068370 |
Zhendong Cai1,2, Song Zhou1,2, Qianqian Liu3, Hui Ma1,2, Xinyi Yuan1,2, Jiaqi Gao1,2, Jinxuan Cao1,2, Daodong Pan1,2.
Abstract
Multiplex PCR methods have been frequently used for authentication of meat product adulteration. Through screening of new species-specific primers designed based on the mitochondrial DNA sequences, a septuple PCR method is ultimately developed and optimized to simultaneously detect seven species including turkey (110 bp), goose (194 bp), pig (254 bp), sheep (329 bp), beef (473 bp), chicken (612 bp) and duck (718 bp) in one reaction. The proposed method has been validated to be specific, sensitive, robust and inexpensive. Taken together, the developed septuple PCR assay is reliable and efficient, not only to authenticate animal species in commercial meat products, but also easily feasible in a general laboratory without special infrastructures.Entities:
Keywords: adulteration; meat species; mitochondrial genes; multiplex PCR; septuple PCR
Year: 2021 PMID: 34068370 PMCID: PMC8153340 DOI: 10.3390/foods10051083
Source DB: PubMed Journal: Foods ISSN: 2304-8158
Oligonucleotide primers for meat species used in this study.
| Primers | Genes | Sequence (5′–3′ Direction) | Amplicons (bp) | Reference or Source |
|---|---|---|---|---|
| Turkey | 16S rRNA | CTCTAGCCCAACCACCCAT | 110 | this study |
| GCGCCTAAGGTCTTTTCTATCAC | ||||
| Goose | 16S rRNA | TTAGACGCGATAGAGACCCCA | 194 | this study |
| GTTCGCTCTCTTTAACTGCTTG | ||||
| Pig | cytochrome c oxidase subunit I | CAGCCCGGAACCCTACTTG | 254 | this study |
| GTTCATCCAGTACCCGCTCC | ||||
| Sheep | cytochrome c oxidase subunit I | AGATATCGGCACCCTTTACCTTC | 329 | this study |
| CTGCTCCGGCCTCAACCAT | ||||
| Beef | 16S rRNA | GTGCCTGATAATACTCTGACCAC | 473 | this study |
| CACCCCAACCGAAACTACCAA | ||||
| Chicken | cytochrome b | TTTCGGCTCCCTATTAGCAGTC | 612 | this study |
| AGTATGAGAGTTAAGCCCAGA | ||||
| Duck | 12S rRNA | TGCCCTCAATAGCCTTCACC | 718 | this study |
| CATACTTCTTTCCGTGTTGCC | ||||
| Eukaryotes | 12S rRNA | CAACTGGGATTAGATACCCCACTAT | 456 | [ |
| GAGGGTGACGGGCGGTGTGT | ||||
| Eukaryotes | 16S rRNA | AAGACGAGAAGACCCTATGGA | 240 | [ |
| GATTGCGCTGTTATCCCTAGGGTA | ||||
| Eukaryotes | 18S rRNA | AGGATCCATTGGAGGGCAAGT | 99 | [ |
| TCCAACTACGAGCTTTTTAACTGCA |
Results of multiplex PCR assay performed on commercial meat products.
| Products | No | Labelled | Detected Species | Adulteration | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Turkey | Goose | Pig | Sheep | Beef | Chicken | Duck | ||||
| Beef | 15 | 5 (33.3%) | ||||||||
| meat balls | 5 | beef | 1/5 b | — | 1/5 a, 1/5 b | — | 5/5 | 1/5 a | — | |
| meat slices | 5 | beef | — | — | 1/5 | — | 5/5 | — | — | |
| kebab | 5 | beef | — | 2/5 | — | 5/5 | — | — | ||
| Mutton | 15 | 6 (40.0%) | ||||||||
| meat balls | 5 | mutton | — | — | 1/5 a, 1/5 b | 5/5 | — | 1/5 a | 1/5 b | |
| meat slices | 5 | mutton | — | — | 2/5 | 5/5 | — | — | — | |
| kebab | 5 | mutton | — | — | 2/5 | 5/5 | — | — | — | |
| Pork | 15 | 4 (26.7%) | ||||||||
| meat balls | 5 | pig | — | 1/5 b | 5/5 | — | — | 1/5 a, 1/5 b | 1/5 a | |
| sausages | 5 | pig | — | — | 5/5 | — | — | 1/5 a | 1/5 b | |
| cutlets | 5 | pig | — | — | 5/5 | — | — | — | — | |
| Turkey | 15 | |||||||||
| cutlets | 5 | turkey | 5/5 | — | — | — | — | 1/5 | — | 1 (6.7%) |
| meat slices | 3 | turkey | 3/3 | — | — | — | — | — | — | |
| breast | 5 | turkey | 5/5 | — | — | — | — | — | — | |
| jerky | 2 | turkey | 2/2 | — | — | — | — | — | — | |
A horizontal line (—) denotes no PCR product detected. In each row, the meat samples labeled with same letter (a or b) represent the identical meat samples, while different letters indicate a difference in meat samples.
Figure 1Specificity assays of simplex PCR. (A) Gel image of the products generated by PCR amplification with species-specific primers for turkey, goose, pig, cattle, sheep, chicken and duck using corresponding genomic DNA as a template, respectively. (B) As positive controls, gel image of the PCR products generated after amplification with premixed universal eukaryotic primer pairs of 12S rRNA, 16S rRNA and 18S rRNA genes for all meat species. (C) Gel image of the products through simplex PCR amplification using species-specific primers for turkey, goose, pig, cattle, sheep, chicken and duck. CM, a complete mixture of turkey, goose, pig, cattle, sheep, chicken and duck; 1–7, a complete DNA mixture except target species DNA. Lane M is ladder DNA.
Figure 2Sensitivity of the developed septuple PCR assay. (A) Gel image of the products generated after multiplex PCR amplifications of premixed DNA templates of all species (10, 5, 1, 0.5, 0.1, 0.05, 0.01 ng) with primers of seven meat species mixtures including turkey, goose, pig, cattle, sheep, chicken and duck. (B) The corresponding electropherograms of gel image (A). Lanes 1–7 are presented with labels (10, 5, 1, 0.5, 0.1, 0.05, 0.01) in (A). Lane M is ladder DNA.
Figure 3Gel image of the PCR products generated by simplex PCR amplifications with turkey, goose, pig, cattle, sheep, chicken and duck DNA extracted from raw (A), boiled (B), autoclaved (C) and microwave-cooked meat samples (D) using each species-specific primer pair. Lane M is ladder DNA.
Figure 4Analysis of commercial foodstuffs using the developed septuple assay. Gel image of the fragments generated by multiplex PCR amplifications using DNA obtained from commercial meat products with premixed primers for seven meat species including turkey, goose, pig, cattle, sheep, chicken and duck.
Comparative analysis of recently published multiplex PCR assays for the identification of meat species.
| Multiplex PCR Type | Sp. No a | Detection Items | Detection Limit | Detection Method b | Reference or Source |
|---|---|---|---|---|---|
| Septuple | 7 | turkey, goose, pig, sheep, beef, chicken, duck | 0.01–0.05 ng DNA | Gel | This study |
| Multiplex | 4 | ruminant, poultry, pork, and donkey | 0.01–0.1 ng/μL DNA | Gel | [ |
| Hexaplex | 6 | chicken, cow/buffalo, sheep/goat, horse/donkey, pork, dog | 0.03–0.05 ng DNA | Gel | [ |
| Multiplex | 5 | sheep/goat, bovine, chicken, duck, pig | 0.5 ng DNA | Gel | [ |
| Multiplex | 2 | cattle, buffalo | 2.23–2.31 ng/μL DNA | Gel | [ |
| Quadruple | 4 | fox, mink, or raccoon in beef and mutton | 1% for each species | Gel | [ |
| Pentaplex | 5 | dog, duck, buffalo, goat, sheep | 0.1–0.32 ng DNA | Gel | [ |
| Multiplex (two-tube) | 14 | cattle, donkey, Canidae (dog, fox, raccoon-dog), deer and horse, pig, Ovis (sheep, goat), poultry (chicken, duck), cat, mouse | 0.02–0.2 ng DNA | Chip | [ |
| Quadruplex | 4 | chicken, mutton, beef, pork | 16 pg DNA, 0.01% of each species | Gel | [ |
| Multiplex (two-tube) | 10 | beef, sheep, pork, chicken, turkey, cat, dog, mouse, rat, human | 30 pg DNA | Gel | [ |
| Tetraplex | 3 | pig, cattle, fish, eukaryotic18S rRNA | 0.001–0.1 ng DNA | Gel | [ |
| Hexaplex | 6 | horse, soybean, sheep, poultry, pork, cow | 0.01% for each species | Gel | [ |
| Octuplex | 8 | dog, chicken, cattle, pig, horse, donkey, fox, and rabbit | 0.05 ng/μL DNA | Gel | [ |
| Multiplex | 3 | chicken, duck and goose | 0.05 ng DNA, 1% for each species | Gel | [ |
| Multiplex | 5 | cat, dog, pig, monkey, rat | 0.01–0.02 ng DNA | Chip | [ |
| Quadruple | 4 | beef, pork, mutton, duck | 0.1 ng DNA | Gel | [ |
a Species number; b Chip, microchip electrophoresis; Gel, agarose gel electrophoresis.