| Literature DB >> 34063512 |
Yuri D Ivanov1,2, Vadim Yu Tatur3, Tatyana O Pleshakova1, Ivan D Shumov1, Andrey F Kozlov1, Anastasia A Valueva1, Irina A Ivanova1, Maria O Ershova1, Nina D Ivanova3,4, Victor V Repnikov5, Igor N Stepanov3, Vadim S Ziborov1,2.
Abstract
External electromagnetic fields are known to be able to concentrate inside the construction elements of biosensors and bioreactors owing to reflection from their surface. This can lead to changes in the structure of biopolymers (such as proteins), incubated inside these elements, thus influencing their functional properties. Our present study concerned the revelation of the effect of spherical elements, commonly employed in biosensors and bioreactors, on the physicochemical properties of proteins with the example of the horseradish peroxidase (HRP) enzyme. In our experiments, a solution of HRP was incubated within a 30 cm-diameter titanium half-sphere, which was used as a model construction element. Atomic force microscopy (AFM) was employed for the single-molecule visualization of the HRP macromolecules, adsorbed from the test solution onto mica substrates in order to find out whether the incubation of the test HRP solution within the half-sphere influenced the HRP aggregation state. Attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR) was employed in order to reveal whether the incubation of HRP solution within the half-sphere led to any changes in its secondary structure. In parallel, spectrophotometry-based estimation of the HRP enzymatic activity was performed in order to find out if the HRP active site was affected by the electromagnetic field under the conditions of our experiments. We revealed an increased aggregation of HRP after the incubation of its solution within the half-sphere in comparison with the control sample incubated far outside the half-sphere. ATR-FTIR allowed us to reveal alterations in HRP's secondary structure. Such changes in the protein structure did not affect its active site, as was confirmed by spectrophotometry. The effect of spherical elements on a protein solution should be taken into account in the development of the optimized design of biosensors and bioreactors, intended for performing processes involving proteins in biomedicine and biotechnology, including highly sensitive biosensors intended for the diagnosis of socially significant diseases in humans (including oncology, cardiovascular diseases, etc.) at early stages.Entities:
Keywords: atomic force microscopy; bioreactor; electromagnetic field; horseradish peroxidase; protein aggregation
Year: 2021 PMID: 34063512 PMCID: PMC8155990 DOI: 10.3390/polym13101601
Source DB: PubMed Journal: Polymers (Basel) ISSN: 2073-4360 Impact factor: 4.329
Figure 1Experimental setup. The test tube containing a 0.1 μM (10−7 M) solution of HRP in a 2 mM PBSD buffer was incubated within an ungrounded metallic half-sphere (in its center, near its edge, or at its bottom) (a), in the center of a grounded metallic sphere (b), or 2 m away from the experimental setup (control experiment).
Figure 2Results of AFM experiments. Typical AFM images of the surface of mica substrates with adsorbed HRP macromolecules (left) and cross-section profiles (right), corresponding to the lines in the AFM images. The analyzed HRP solution was incubated either 2 m away from the metallic half-sphere (a) (control solution) or within the half-sphere: in its center (b), near its edge (c), and at its bottom (d); or in the center of the grounded sphere (e). Scan size: 1 μm × 1 μm (a–e); Z scale: 1.6 μm (a,c), 2.0 μm (b,d,e).
Figure 3Results of AFM data processing. The plots of the density of the relative distribution of the imaged objects with height ρ(h) (density function plots) obtained for the HRP solutions, which were incubated either 2 m away from the metallic half-sphere (black; control solution); within the half-sphere: in its center (red), near its edge (green), and at its bottom (magenta); or within the grounded metallic sphere (blue). Relative content indicates the number of protein molecules measured at a given height divided by the total number of the molecules visualized on the substrate.
Figure 4Typical attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR) spectra of the HRP solution, incubated either in the center of the half-sphere (red) or 2 m away from the half-sphere (black). The HRP concentration was 10−4 M. Arrows indicate the characteristic Amide I (1660 cm−1) and Amide II (1550 cm−1) peaks.
Figure 5Results of spectrophotometry-based estimation of HRP enzymatic activity using a standard assay with ABTS. Typical time dependencies of the absorbance at 405 nm obtained for the HRP solutions incubated in the center of the half-sphere (red), near the edge of the half-sphere (green), in the center of the grounded sphere (green), and 2 m away from the half-sphere (control solution; black). Experimental conditions: HRP:ABTS:H2O2 = 10−9 M:0.3 mM:2.5 mM. T = 23 °C.