Literature DB >> 34059631

Dissecting the genome of star fruit (Averrhoa carambola L.).

Yannan Fan1, Sunil Kumar Sahu1, Ting Yang1, Weixue Mu1, Jinpu Wei1, Le Cheng2, Jinlong Yang2, Ranchang Mu3, Jie Liu3, Jianming Zhao3, Yuxian Zhao4, Xun Xu1,5, Xin Liu1,6, Huan Liu7,8.   

Abstract

Averrhoa carambola is commonly known as star fruit because of its peculiar shape, and its fruit is a rich source of minerals and vitamins. It is also used in traditional medicines in countries such as India, China, the Philippines, and Brazil for treating various ailments, including fever, diarrhea, vomiting, and skin disease. Here, we present the first draft genome of the Oxalidaceae family, with an assembled genome size of 470.51 Mb. In total, 24,726 protein-coding genes were identified, and 16,490 genes were annotated using various well-known databases. The phylogenomic analysis confirmed the evolutionary position of the Oxalidaceae family. Based on the gene functional annotations, we also identified enzymes that may be involved in important nutritional pathways in the star fruit genome. Overall, the data from this first sequenced genome in the Oxalidaceae family provide an essential resource for nutritional, medicinal, and cultivational studies of the economically important star-fruit plant.

Year:  2020        PMID: 34059631     DOI: 10.1038/s41438-020-0306-4

Source DB:  PubMed          Journal:  Hortic Res        ISSN: 2052-7276            Impact factor:   6.793


  38 in total

1.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Improvement of the hypocholesterolemic activities of two common fruit fibers by micronization processing.

Authors:  She-Ching Wu; Shiuan-Huei Wu; Chi-Fai Chau
Journal:  J Agric Food Chem       Date:  2009-06-24       Impact factor: 5.279

4.  Protective effect of Averrhoa bilimbi L. fruit extract on ulcerative colitis in wistar rats via regulation of inflammatory mediators and cytokines.

Authors:  Jagadish Kumar Suluvoy; K M Sakthivel; C Guruvayoorappan; V M Berlin Grace
Journal:  Biomed Pharmacother       Date:  2017-05-16       Impact factor: 6.529

5.  Influence of sonication treatments and extraction solvents on the phenolics and antioxidants in star fruits.

Authors:  H V Annegowda; Rajeev Bhat; Liong Min-Tze; A A Karim; S M Mansor
Journal:  J Food Sci Technol       Date:  2011-06-25       Impact factor: 2.701

6.  Analysis of polyphenolic antioxidants in star fruit using liquid chromatography and mass spectrometry.

Authors:  Guanghou Shui; Lai Peng Leong
Journal:  J Chromatogr A       Date:  2004-01-02       Impact factor: 4.759

7.  Anti-hyperglycemic action of apigenin-6-C-β-fucopyranoside from Averrhoa carambola.

Authors:  Luisa Helena Cazarolli; Virgínia Demarchi Kappel; Danielle Fontana Pereira; Henrique Hunger Moresco; Inês Maria Costa Brighente; Moacir Geraldo Pizzolatti; Fátima Regina Mena Barreto Silva
Journal:  Fitoterapia       Date:  2012-07-14       Impact factor: 2.882

8.  InterProScan: protein domains identifier.

Authors:  E Quevillon; V Silventoinen; S Pillai; N Harte; N Mulder; R Apweiler; R Lopez
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  Direct determination of diploid genome sequences.

Authors:  Neil I Weisenfeld; Vijay Kumar; Preyas Shah; Deanna M Church; David B Jaffe
Journal:  Genome Res       Date:  2017-04-05       Impact factor: 9.043

Review 10.  Nutritional, Medicinal and Toxicological Attributes of Star-Fruits (Averrhoa carambola L.): A Review.

Authors:  Narmataa Muthu; Su Yin Lee; Kia Kien Phua; Subhash Janardhan Bhore
Journal:  Bioinformation       Date:  2016-12-22
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