Sun Lul Kwon1, Myung Soo Park2, Seokyoon Jang1, Young Min Lee1, Young Mok Heo1, Joo-Hyun Hong1, Hanbyul Lee1, Yeongseon Jang3, Ji-Hyun Park2, Changmu Kim4, Gyu-Hyeok Kim1, Young Woon Lim5, Jae-Jin Kim6. 1. Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul, 02841, South Korea. 2. School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, 08826, South Korea. 3. Division of Wood Chemistry and Microbiology, National Institute of Forest Science, Seoul, 02455, South Korea. 4. Microorganism Resources Division, National Institute of Biological Resources, Incheon, 22689, South Korea. 5. School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, 08826, South Korea. ywlim@snu.ac.kr. 6. Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul, 02841, South Korea. jae-jinkim@korea.ac.kr.
Abstract
Species of Arthrinium are well-known plant pathogens, endophytes, or saprobes found in various terrestrial habitats. Although several species have been isolated from marine environments and their remarkable biological activities have been reported, marine Arthrinium species remain poorly understood. In this study, the diversity of this group was evaluated based on material from Korea, using morphological characterization and molecular analyses with the internal transcribed spacer (ITS) region, β-tubulin (TUB), and translation elongation factor 1-alpha (TEF). A total of 41 Arthrinium strains were isolated from eight coastal sites which represented 14 species. Eight of these are described as new to science with detailed descriptions.
Species of Arthrinium are well-known plant pathogens, endophytes, or saprobes found in various terrestrial habitats. Although several species have been isolated from marine environments and their remarkable biological activities have been reported, marine Arthrinium species remain poorly understood. In this study, the diversity of this group was evaluated based on material from Korea, using morphological characterization and molecular analyses with the internal transcribed spacer (ITS) region, β-tubulin (TUB), and translation elongation factor 1-alpha (TEF). A total of 41 Arthrinium strains were isolated from eight coastal sites which represented 14 species. Eight of these are described as new to science with detailed descriptions.
Entities:
Keywords:
Eight new taxa; Fungal diversity; Marine fungi; Multigene phylogeny
The genus Arthrinium, which belongs to Apiosporaceae in Xylariales (class Sordariomycetes in Ascomycota), was first recognized and established more than 200 years ago, with A. caricicola as type species (Schmidt and Kunze 1817). To date, it comprises approximately 88 species worldwide (Index Fungorum: http://www.indexfungorum.org).Arthrinium species have traditionally been classified based on morphological characteristics such as conidial shape, conidiophores, and the presence or absence of sterile cells and setae (Schmidt & Kunze 1817; Hughes 1953; Minter 1985). Among these characteristics, conidial shape appears to be diagnostic for distinguishing species (Singh et al. 2013). However, morphological variation is often observed depending on the growth substrate and incubation period (Crous & Groenewald 2013). As such, species identification based on morphological characteristics is problematic and impractical. To address this problem, DNA sequences of the internal transcription spacer (ITS), translation elongation factor 1-alpha (TEF), and β-tubulin gene (TUB) were employed to delimit and recognize closely related Arthrinium species and infer their phylogenetic relationships (Crous & Groenewald 2013).Arthrinium species have been globally reported as endophytes, plant pathogens, and saprobes and are commonly isolated from various terrestrial environments, including air, plants, and soil (Kim et al. 2011; Crous & Groenewald 2013; Wang et al. 2018). More recently, isolation from various marine environments, including seawater, seaweed, and the inner tissues of marine sponges, has been reported (Miao et al. 2006; Tsukamoto et al. 2006; Suryanarayanan 2012; Flewelling et al. 2015; Hong et al. 2015; Wei et al. 2016; Elissawy et al. 2017; Li et al. 2017). Arthrinium species isolated from sponges, egg masses of sailfin sandfish, and seaweeds showed promising bioactive properties, including high enzymatic activity, antifungal activity, and antioxidant capacity (Elissawy et al. 2017; Li et al. 2017; Park et al. 2018). Some species (A. arundinis, A. phaeospermum, A. rasikravindrae, A. sacchari, and A. saccharicola) have been detected in both marine and terrestrial environments (Wang et al. 2018). Whether these species have specific adaptations to survive in seawater requires further investigation. A recent study showed that marine Arthrinium species developed strategies to adapt to marine environments, such as a symbiotic partnership with seaweed (Heo et al. 2018). In marine systems, dissolved organic matter in seawater can absorb ultraviolet radiation and produce reactive oxygen species (ROS), which cause oxidative stress on marine microorganisms (Mopper & Kieber 2000). Heo et al. (2018) detected relatively high antioxidant activity and radical-scavenging activity in marine-derived Arthrinium species. The antifungal activity of seaweed-pathogenic fungi has also been studied (Hong et al. 2015; Heo et al. 2018). Arthrinium saccharicola (KUC21342) has the potential to inhibit the growth of Asteromyces cruciatus, a pathogenic fungus that attacks brown algae (Heo et al. 2018). The discovery of the promising bioactivities of marine Arthrinium species was one of the reasons motivating our subsequent investigation of the diversity of marine Arthrinium in Korea.Six species of Arthrinium have previously been reported from marine environments in Korea: A. arundinis, A. marii, A. phaeospermum, A. rasikravindrae, A. sacchari, and A. saccharicola (Hong et al. 2015; Heo et al. 2018; Park et al. 2018). However, many marine species remain unidentified owing to the lack of resolution in ITS-based phylogenies and the paucity of morphological characteristics. The aim of this study was to investigate marine Arthrinium species from coastal environments in Korea and to identify them using morphological characteristics and multigene phylogenies (ITS, TEF, and TUB).
MATERIALS AND METHODS
Sampling and isolation
The seaweed Sargassum fulvellum and unidentified seaweeds were collected from two locations, Taean-gun on the west coast of Korea and Jeju Island south of Korea. To isolate the fungi, the seaweeds were washed with distilled water and cut into small pieces (approximately 5 mm diam) using a sterile surgical blade. The pieces were treated with 70% ethanol for 60 s and washed in sterile distilled water for 10 s. Each piece was placed on 2% malt extract agar (MEA) supplemented with 0.01% streptomycin and 0.01% ampicillin to inhibit bacterial growth. The plates were incubated at 25 °C for 7–15 d. Suspected Arthrinium colonies were transferred onto potato dextrose agar (PDA, Difco, Sparks, MD, USA) plates. The colonies were subsequently identified as belonging to Arthrinium based on ITS sequences (see below). A total of 14 Arthrinium strains were isolated in this study and an additional 27 Arthrinium strains were obtained from the Seoul National University Fungus Collection (SFC), Seoul, Korea. Each strain is stored in 20% glycerol at − 80 °C in the Korea University Fungus Collection (KUC), Seoul, Korea. Type specimens were deposited in the Korean Collection for Type Culture, Daejeon, Korea (KCTC), with ex-type living cultures deposited in KUC.
DNA extraction, PCR amplification, and sequencing
Genomic DNA was extracted using an Accuprep Genomic DNA extraction kit (Bioneer, Korea) according to the manufacturer’s protocol. PCR targeting the ITS, TUB, and TEF regions was carried out according to a previously described method (Hong et al. 2015). For the ITS region, the primers ITS1F and ITS4/LR3 were used (White et al. 1990; Gardes & Bruns 1993); for TUB, we employed Bt2a/T10 and Bt2b/T2 (Glass & Donaldson 1995; O’Donnell & Cigelnik 1997), and for TEF, we used EF1-728F and EF2 (O’Donnell et al. 1998; Carbone & Kohn 1999). All PCR products were checked on a 1% agarose gel and purified with the AccuPrep PCR/Gel DNA Purification Kit (Bioneer, Seoul, Korea). DNA sequencing was performed at Macrogen (Seoul, Korea) on an ABI3730 automated DNA Sequencer (Applied Biosystems, Foster City, CA) using the same set of primers for each locus. Additional DNA sequences of some strains were obtained from previous studies (Hong et al. 2015; Heo et al. 2018). All new sequences generated in this study were deposited in GenBank (Table 1).
Table 1
A list of all the strains included in the phylogenetic analysis
Identity
Culture no.a
Isolation source
Location
GenBank accession no.b
ITS
TUB
TEF
A. agarisp. nov.
KUC21333T = SFC20161014-M18
Agarum cribrosum
Yangyang-gun, Korea
MH498520
MH498478
MH544663
KUC21361
Agarum cribrosum
Yangyang-gun, Korea
MH498519
MH498477
MN868914
KUC21362
Agarum cribrosum
Yangyang-gun, Korea
MH498518
MH498476
MN868915
KUC21363
Agarum cribrosum
Yangyang-gun, Korea
MH498517
MH498475
MN868916
KUC21364
Agarum cribrosum
Yangyang-gun, Korea
MH498516
MH498474
MN868917
A. arctoscopisp. nov.
KUC21331T = SFC20200506-M05
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498529
MH498487
MN868918
KUC21344
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498528
MH498486
MN868919
KUC21345
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498527
MH498485
MN868920
KUC21346
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498526
MH498484
MN868921
KUC21347
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498525
MH498483
MN868922
A. arundinis
CBS 124788
Living leaves of Fagus sylvatica
Basel, Switzerland
KF144885
KF144975
KF145017
CBS 114316
Leaf of Hordeum vulgare
Shabestar, Iran
KF144884
KF144974
KF145016
KUC21261
Sargassum fulvellum
Jeju-do, Korea
KT207779
MH498511
MH544683
KUC21229
Sargassum fulvellum
Jeju-do, Korea
KT207747
MH498512
MH544684
KUC21337
Beach Sand
Muan-gun, Korea
MH498551
MH498509
MH544682
A. aureum
CBS 244.83
Air
Barcelona, Spain
AB220251
KF144981
KF145023
A. balearicum
AP24118T = CBS 145129
Undetermined Poaceae
Liucmajor, Spain
MK014869
MK017975
–
A. bambusae
LC7106
Leaf of bamboo
China
KY494718
KY705186
KY806204
LC7107
Leaf of bamboo
China
KY494719
KY705187
KY705117
A. camelliae-sinensis
LC5007
Camellia sinensis
China
KY494704
KY705173
KY705103
LC8181
Brassica capestris
China
KY494761
KY705229
KY705157
A. descalsii
AP3118AT = CBS 145130
Ampelodesmos mauritanicus
Spain
MK014870
MK017976
–
A. dichotomanthi
LC4950
Dichotomanthus tristaniaecarpa
China
KY494697
KY705167
KY705096
LC8175
Dichotomanthus tristaniaecarpa
China
KY494755
KY705223
KY705151
A. esporlense
AP16717 T = CBS 145136
Phyllostachys aurea
Spain
MK014878
MK017983
–
A. euphorbiae
IMI 285638b
Bambusa sp.
Bangladesh
AB220241
AB220288
–
A. fermentisp. nov.
KUC21289 T
Seaweed
Haenam-gun, Korea
MF615226
MF615231
MH544667
KUC21288 = SFC20140423-M86
Seaweed
Haenam-gun, Korea
MF615230
MF615235
MH544668
A. gaoyouense
CFCC 52301
Phragmites australis
China
MH197124
MH236789
MH236793
CFCC 52302
Phragmites australis
China
MH197125
MH236790
MH236794
A. garethjonesii
JHB004 = HKAS:96289
Culms of dead bamboo
China
KY356086
–
–
A. guizhouense
LC5318
Air in karst cave
China
KY494708
KY705177
KY705107
LC5322
Air in karst cave
China
KY494709
KY705178
KY705108
A. gutiae
CBS 135835
Gut of a grasshopper
India
KR011352
KR011350
KR011351
A. hispanicum
IMI 326877
Maritime sand
Spain
AB220242
AB220289
–
A. hydei
CBS 114990
Culms of Bambusa tuldoides
Tai Po Kau, Hong Kong
KF144890
KF144982
KF145024
JHB0012 = HKAS:96355
Dead culms of bamboo
China: Kunming
KY356087
–
–
LC7103
Leaf of bamboo
China
KY494715
KY705183
KY705114
LC7105
Leaf of bamboo
China
KY494717
KY705185
KY705116
A. hyphopodii
MFLUCC 15–0003
Culms of Bambusa tuldoides
Thailand
KR069110
–
–
JHB003 = HKAS:96288
Culms of Bamboo
China: Kunming
KY356088
–
–
A. hysterinum
CBS 145133
Phyllostachys aurea
Spain
MK014875
MK017981
–
CBS 145135
Phyllostachys aurea
Spain
MK014877
MK017982
–
A. ibericum
AP10118 T = CBS 145137
Arundo donax
Portugal
MK014879
MK017984
–
A. italicum
AP221017 T = CBS 145138
Arundo donax
Italy
MK014880
MK017985
MK017956
AP29118 = CBS 145139
Phragmites australis
Spain
MK014881
MK017986
–
A. jiangxiense
LC2831
Leaf of bamboo
China
KY494686
KY806201
KY705085
LC4494
Phyllostachys sp.
China
KY494690
KY705160
KY705089
A. kogelbergense
CBS 113332
Culms of Cannomois virgata
Republic of South Africa
KF144891
KF144983
KF145025
CBS 113333
Dead culms of Restionaceae
Republic of South Africa
KF144892
KF144984
KF145026
A. koreanumsp. nov.
KUC21332 T = SFC20200506-M06
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498524
MH498482
MH544664
KUC21348
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498523
MH498481
MN868927
KUC21349
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498522
MH498480
MN868928
KUC21350
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498521
MH498479
MN868929
A. longistromum
MFLUCC 11–0481
Culms of Decaying bamboo
Thailand
KU940141
–
–
MFLUCC 11–0479
Culms of Decaying bamboo
Thailand
KU940142
–
–
A. malaysianum
CBS 251.29
Stem base of Cinnamomum camphora
Malaysia
KF144897
KF144989
KF145031
CBS 102053
Macaranga hullettii stem colonized by ants
Gombak, Malaysia
KF144896
KF144988
KF145030
A. marii
KUC21338 = SFC20140423-M01
Seaweed
Muan-gun, Korea
MH498549
MH498507
MH544681
CBS 113535
Oats
Sweden
KF144898
KF144990
KF145032
CBS 114803
Culm of Arundinaria hindsi
Lung Fu Shan, Hong Kong
KF144899
KF144991
KF145033
A. marinumsp. nov.
KUC21328T = SFC20140423-M02
Seaweed
Suncheon-si, Korea
MH498538
MH498496
MH544669
KUC21353
Seaweed
Suncheon-si, Korea
MH498537
MH498495
MN868923
KUC21354
Seaweed
Suncheon-si, Korea
MH498536
MH498494
MN868924
KUC21355
Seaweed
Suncheon-si, Korea
MH498535
MH498493
MN868925
KUC21356
Seaweed
Suncheon-si, Korea
MH498534
MH498492
MN868926
A. mediterranei
IMI 326875
Air
Spain
AB220243
AB220290
–
A. mytilomorphum
DAOM 214595
Dead blades of Andropogon sp.
India
KY494685
–
–
A. obovatum
LC4940
Lithocarpus sp.
China
KY494696
KY705166
KY705095
LC8177
Lithocarpus sp.
China
KY494757
KY705225
KY705153
A. ovatum
CBS 115042
Arundinaria hindsii
Hong Kong
KF144903
KF144995
KF145037
A. phaeospermum
KUC21339
Phragmites australis
Boseong-gun, Korea
MH498550
MH498508
–
CBS 114314
Leaf of Hordeum vulgare
Marand, Iran
KF144904
KF144996
KF145038
CBS 114315
Leaf of Hordeum vulgare
Shabestar, Iran:
KF144905
KF144997
KF145039
A. phragmitis
CPC 18900
Culms of Phragmites australis
Bomarzo, Italy
KF144909
KF145001
KF145043
A. piptatheri
AP4817AT = CBS 145149
Piptatherum miliaceum
Spain
MK014893
–
KUC21220
Sargassum fulvellum
Jeju-do, Korea
KT207736
KT207636
MH544672
KUC21279
Sargassum fulvellum
Jeju-do, Korea
MF615229
MF615234
MH544671
A. pseudoparenchymaticum
LC7234
Leaf of bamboo
China
KY494743
KY705211
KY705139
LC8173
Leaf of bamboo
China
KY494753
KY705221
KY705149
A. pseudosinense
CPC 21546
Leaf of bamboo
Utrecht, Netherlands
KF144910
MN868936
KF145044
A. pseudospegazzinii
CBS 102052
Macaranga hullettii stem colonized by ants
Gombak, Malaysia
KF144911
KF145002
KF145045
A. pterospermum
CPC 20193
Lepidosperma gladiatum
Adelaide, Australia
KF144913
KF145004
KF145046
CBS 123185
Machaerina sinclairii
Auckland, New Zealand
KF144912
KF145003
–
A. pusillispermumsp. nov.
KUC21321 T
Seaweed
Taean-gun, Korea
MH498533
MH498491
MN868930
KUC21357
Seaweed
Taean-gun, Korea
MH498532
MH498490
MN868931
A. qinlingense
CFCC 52303
Fargesia qinlingensis
China
MH197120
MH236791
MH236795
CFCC 52303
Fargesia qinlingensis
China
MH197121
MH236792
MH236796
A. rasikravindrae
CBS 337.61
Cissus sp.
Netherlands
KF144914
–
–
CPC 21602
Rice
Thailand
KF144915
–
–
LC5449
Soil in karst cave
China
KY494713
KY705182
KY705112
LC7115
Leaf of bamboo
China
KY494721
KY705189
KY705118
NFCCI2144
Soil
Svalbard
JF326454
–
–
KUC21327
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498541
MH498499
MH544670
KUC21351
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498540
MH498498
MN868932
A. sacchari
KUC21340 = SFC20200506-M04
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498548
MH498506
MH544680
CBS 301.49
Bamboo
Indonesia
KF144917
KF145006
KF145048
CBS 212.30
Phragmites australis
Cambridge, United Kingdom
KF144916
KF145005
KF145047
CBS 372.67
Air
–
KF144918
KF145007
KF145049
A. saccharicola
KUC21221
Sargassum fulvellum
Hyeopjae Beach, Jeju-do
KT207737
KT207637
MH544679
KUC21342 = SFC20160407-M06
Egg of Arctoscopus japonicus
Goseong-gun, Korea
MH498546
MH498504
MN868933
KUC21343 = SFC20161110-M12
Egg of Arctoscopus japonicus
Yeongok-myeon, Gangneung-si
MH498545
MH498503
MH544678
CBS 191.73
Air
Utrecht, Netherlands
KF144920
KF145009
KF145051
CBS 463.83
Dead culms of Phragmites australis
Harderbos, Netherlands
KF144921
KF145011
KF145053
A. sargassisp. nov.
KUC21228 T
Sargassum fulvellum
Jeju-do, Korea
KT207746
KT207644
MH544677
KUC21232
Sargassum fulvellum
Jeju-do, Korea
KT207750
KT207648
MH544676
KUC21284
Sargassum fulvellum
Jeju-do, Korea
MF615228
MF615233
MH544674
KUC21287
Sargassum fulvellum
Jeju-do, Korea
MF615227
MF615232
MN868934
A. serenense
IMI 326869
Food, pharmaceutical excipients, atmosphere
Spain
AB220250
AB220297
–
A. subroseum
LC7215
Leaf of bamboo
China
KY494740
KY705208
KY705136
LC7291
Leaf of bamboo
China
KY494751
KY705219
KY705147
A. taeanensesp. nov.
KUC21322T
Seaweed
Taean-gun, Korea
MH498515
MH498473
MH544662
KUC21359
Seaweed
Taean-gun, Korea
MH498513
MH498471
MN868935
A. thailandicum
MFLUCC 15–0202
Culms of Dead bamboo
Thailand
KU940145
–
–
LC5630
Rotten wood
China
KY494714
KY806200
KY705113
A. vietnamense
IMI 99670
Citrus sinensis
Vietnam
KX986096
KY019466
–
A. xenocordella
CBS 478.86
Soil
Matopos, Zimbabwe
KF144925
KF145013
KF145055
LC3486
Camellia sinensis
China
KY494687
KY705158
KY705086
A. yunnanum
MFLUCC 15–0002
Culms of Decaying bamboo
China
KU940147
–
–
DDQ00281
Phyllostachys nigra
China
KU940148
–
–
Nigrospora gorlenkoana
CBS 480.73
Vitis vinifera
Kazakhstan
KX986048
KY019456
KY019420
indicates ex-type
a
CBS Westerdijk Fungal Biodiverity Institute (WI), Utrecht, The Netherlands; CFCC China Forestry Culture Collection Centre, Beijing, China; CPC Culture collection of Pedro Crous, housed at the Westerdijk Fungal Biodiversity Institute; DAOM Canadian Collection of Fungal Cultures, Ottawa, Canada; HKAS Herbarium of Cryptogams, Kunming Institute of Botany, Chinese Academy of Sciences, Yunnan, China; IMI CABI Bioscience, Eggham, UK; LC Personal culture collection of Lei Cai, housed at CAS, China; MFLUCC Mae Fah Luang University Culture Collection, Thailand; NFCCI National Fungal Culture Collection of India; DDQ D.Q. Dai; JHB H.B. Jiang; KUC the Korea University Fungus Collection, Seoul, Korea; SFC the Seoul National University Fungus Collection
b the sequences generated in this study are shown in bold
A list of all the strains included in the phylogenetic analysisindicates ex-typea
CBS Westerdijk Fungal Biodiverity Institute (WI), Utrecht, The Netherlands; CFCC China Forestry Culture Collection Centre, Beijing, China; CPC Culture collection of Pedro Crous, housed at the Westerdijk Fungal Biodiversity Institute; DAOM Canadian Collection of Fungal Cultures, Ottawa, Canada; HKAS Herbarium of Cryptogams, Kunming Institute of Botany, Chinese Academy of Sciences, Yunnan, China; IMI CABI Bioscience, Eggham, UK; LC Personal culture collection of Lei Cai, housed at CAS, China; MFLUCC Mae Fah Luang University Culture Collection, Thailand; NFCCI National Fungal Culture Collection of India; DDQ D.Q. Dai; JHB H.B. Jiang; KUC the Korea University Fungus Collection, Seoul, Korea; SFC the Seoul National University Fungus Collectionb the sequences generated in this study are shown in bold
Phylogenetic analysis
ITS sequences were assembled, proofread and edited using MEGA v. 7 (Kumar et al. 2016) and subsequently aligned with Arthrinium reference sequences from GenBank using MAFFT 7.130 (Katoh and Standley 2013). To adjust the ambiguous alignment manually, maximum likelihood analysis was performed using all sequence where ambiguous regions excluded using G-block. Then, the original sequences were aligned based on the supported clades, and ambiguous regions were manually adjusted.Maximum likelihood (ML) analyses were conducted using RAxML v. 7.03 (Stamatakis 2006) and a GTR + G model with 1000 bootstrap replicates. Bayesian tree inference (BI) was carried out using MrBayes version 3.2 (Ronquist et al. 2012), with the best model (HKY + I + G) selected for each marker based on the Bayesian information criteria using jModeltest v. 2.1.10 (Darriba et al. 2012). To achieve stationary equilibrium, 20 million trees were generated, and trees were sampled every 1000 generations. The first 25% of the trees was discarded as burn-in, and the remaining 75% was used for calculating posterior probabilities (PP) in the majority rule consensus tree. All analyses were performed on the CIPRES web portal (Miller et al. 2010).The sequences of the other two loci (TEF and TUB) were individually aligned with Arthrinium reference sequences from GenBank using the same approach described for the ITS. ML and BI analyses also followed the above criteria. The models for TEF and TUB were HKY + I + G and K80 + I + G, respectively. The ITS taxa for the multigene tree were different from those of the single ITS tree, so the model test for the ITS region was redone for the multigene analysis. As a result, the SYM + G model was applied to ITS region in the multigene tree. Finally, sequence concatenation was performed using the same methods and models assigned for each locus described above.
Morphological observation
Strains were grown on oatmeal agar (OA, Difco™), PDA, and MEA at 15, 20, and 25 °C in darkness for 14 d. The culture characteristics, such as surface structure, presence of aerial mycelium and the colour of the mycelium, colour of colony or medium, and sporulation (Crous et al. 2009), were recorded. Colors and the corresponding codes were evaluated according to the Munsell color chart (Munsell Color, 2009). To determine fungal growth rates, the diameter of each colony was measured every 24 h, and each measurement was performed in triplicate. Microscopic characters were observed with an Olympus BX51 light microscope (Olympus, Tokyo, Japan). Samples were mounted in water to take pictures of conidiophores and conidia, and pictures were taken using a DP20 microscope camera (Olympus, Tokyo, Japan). At least 30 individuals were measured for each microscopic character. To illustrate the range of variation, 5% of the extreme measurements from each end of the range are given in parentheses.Scanning electron microscope (SEM) was used to observe detailed morphological characters. Colonies sporulating abundantly on PDA, MEA, and OA were freeze-dried. Ion coating and observation were performed by Wooyoung Solution Inc. (Suwon, Korea), using an S-5200 scanning electron microscope (Hitachi, Tokyo, Japan). The SEM images were taken under 1500x to 8000x magnifications.
RESULTS
A total of 41 Arthrinium strains were identified, representing six known and eight new species. Of these strains, 26 were isolated from various seaweeds, 14 from the eggs of sailfin sandfish, and one from beach sand. The dominant species were three of the new species, A. agari (5 strains), A. arctoscopi (5 strains), and A. marinum (5 strains) (Table 1).A total of 21 ITS (580–1150 bp), 24 TEF (420–970 bp), and 22 TUB (400–560 bp) sequences were newly generated for the 41 Arthrinium strains. The ITS phylogeny contained 124 terminals, including Nigrospora gorlenkoana as outgroup. The concatenated three-gene phylogeny contained 95 terminals, consisting of 749, 613, and 503 characters respectively, including gaps. Preliminary identification was based on the ITS region, and multigene analysis was used to test the identifications, determine the phylogenetic relationships among the taxa, and to resolve closely related species. Both the ML and Bayesian analyses showed the same tree topologies and the ML tree is represented (Figs. 1, 2).
Fig. 1
ML tree based on the ITS region. The numbers at the nodes indicate ML bootstrap support (BS) > 75% and Bayesian posterior probabilities (PP) > 0.75 as BS/PP. The thickened branches indicate support greater than 85% for BS and 0.95 for PP. A hyphen (‘-‘) indicates values of BS < 70% or PP < 0.75. Ex-holotype strains are indicated with asterisks (‘*’). The fungal cultures examined in this study are shown in bold. Red boxes indicate the novel species. The numbers in the brackets indicate strain number. The scale bar indicates the nucleotide substitutions per position
Fig. 2
ML tree based on the ITS, TUB, and TEF regions combined. The numbers at the nodes indicate ML bootstrap support (BS) > 75% and Bayesian posterior probabilities (PP) > 0.75 as BS/PP. The thickened branches indicate support greater than 85% for BS and 0.95 for PP. A hyphen (‘-‘) indicates values of BS < 70% or PP < 0.75. Ex-holotype strains are indicated with asterisks (‘*’). The fungal cultures examined in this study are shown in bold. Red boxes indicate the novel species. The numbers in the brackets indicate strain number. The scale bar indicates the nucleotide substitutions per position
ML tree based on the ITS region. The numbers at the nodes indicate ML bootstrap support (BS) > 75% and Bayesian posterior probabilities (PP) > 0.75 as BS/PP. The thickened branches indicate support greater than 85% for BS and 0.95 for PP. A hyphen (‘-‘) indicates values of BS < 70% or PP < 0.75. Ex-holotype strains are indicated with asterisks (‘*’). The fungal cultures examined in this study are shown in bold. Red boxes indicate the novel species. The numbers in the brackets indicate strain number. The scale bar indicates the nucleotide substitutions per positionML tree based on the ITS, TUB, and TEF regions combined. The numbers at the nodes indicate ML bootstrap support (BS) > 75% and Bayesian posterior probabilities (PP) > 0.75 as BS/PP. The thickened branches indicate support greater than 85% for BS and 0.95 for PP. A hyphen (‘-‘) indicates values of BS < 70% or PP < 0.75. Ex-holotype strains are indicated with asterisks (‘*’). The fungal cultures examined in this study are shown in bold. Red boxes indicate the novel species. The numbers in the brackets indicate strain number. The scale bar indicates the nucleotide substitutions per positionThe 41 Arthrinium strains obtained in this study formed five clades (A, B, C, D, and E), both in the ITS-based and combined phylogeny analyses (Figs. 1, 2). In the ITS tree, many Arthrinium species were distinguished from one another. However, some were not clearly separated (clades B and D) and the relationships of the others (clades C and D) were not resolved. The above problem was solved in the individual trees of TEF and TUB (Figs. 1S, 2S), and the multigene tree based on the ITS, TUB, and TEF regions (Fig. 2). The multigene analysis supported the conclusion that six taxa corresponded to known species. Eight putatively novel species were classified into five clades (Fig. 2). The eight species were clearly separated from the previously sequenced taxa, each forming a clade with high support (over 99% of BS, 0.99 of PP) (Fig. 2). Arthrinium agari and A. koreanum. Were included in clade A, A. piptatheri and A. fermenti were in clade D, and A. pusillispermum and A. taeanense were in clade E. Comparison with morpho-anatomical and other data of species that have so far not been sequenced supported our interpretation of these eight entities representing novel species.
TAXONOMY
S.L. Kwon, S. Jang & J.J. Kim, sp. nov.MycoBank MB834592(Fig. 3)
Fig. 3
Arthrinium agari (KUC21333). a-c Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μm
Arthrinium agari (KUC21333). a-c Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μmEtymology: ‘agari’ refers to the generic name of Agarum cribrosum, the source of the type strain.Molecular diagnosis: Arthrinium agari is distinguished from the phylogenetically most closely related species, A. arundinis, by unique single nucleotide polymorphisms in the three loci used in this study (Figs. 3S, 4S, 5S): ITS positions 21 (C), 31 (indel), 36 (C), 38 (T), 93 (C), 111 (C), 113 (T), 122–124 (indel), 190–203 (indel), 205 (indel), 214–223 (indel), 227 (G), 228 (A), 253 (G), 259 (A), 291 (A), 535 (T), and 645 (indel); TEF positions 14 (A), 16 (G), 17 (T), 32 (C), 35 (A), 47 (C), 54 (T), 59–62 (indel), 64 (T), 65 (T), 79 (G), 85 (G), 96 (T), 125 (G), 135 (indel), 151 (C), 173 (G), 174 (A), 176 (G), 192 (T), 213 (C), 249 (G), 265 (C), 271 (C), 288 (G), 302 (T), 306 (G), 312 (indel), 331 (G), and 494 (A); TUB positions 15 (G), 29 (A), 31 (A), 62 (T), 67 (G), 80 (T), 89 (A), 98 (G), 99 (C), 138 (T), 139 (T), 140 (T), 143 (T), 199 (T), 208 (A), 210 (A), 212 (A), 223 (T), 229 (A), 232 (T), 312 (C), 324 (A), 331 (G), 377 (T), 428 (C), 467 (T), and 482 (A).Type: Korea: Gangwon-do, Yangyang-gun, 38°07′04.8″N, 128°38′00.8″E, isolated from Agarum cribrosum, 11 Sept. 2016, M.S. Park (Herb. KCTC 46909 – holotype preserved in a metabolically inactive state; KUC21333 = NIBRFGC000501588, SFC20161014-M18 – ex-type cultures).Description: Mycelium of smooth, hyaline, branched, septate, hyphae 2.0–3.5 μm diam. Conidiogenous cells aggregated in clusters on hyphae or solitary, at first hyaline, becoming pale green, cylindrical, sometimes ampulliform. Conidia brown, smooth to granular, globose to subglobose in surface view, (8.5–)9.0–10.5 × (7.0–)7.5–8.5 (− 9.0) μm ( = 9.5 × 8.1 μm, n = 30); lenticular in side view, with equatorial slit, 5.5–7.0 μm wide ( = 6.4 μm, n = 30), elongated cell observed.Culture: PDA: colonies thick, concentrically spreading with aerial mycelium, margin irregular; mycelia white to grey and pale brown coloured; sporulation on hyphae; dark olive-brown (2.5Y 3/3) pigment diffused in media; odour indistinct. MEA: colonies low, flat, concentrically spreading with sparse aerial mycelium, margin circular; mycelia white; sporulation not observed; pigment absent in medium; odour indistinct. OA: colonies thick, concentrically spreading with aerial mycelium, margin circular; mycelia white to pink; sporulation was not observed; partially pink (2.5YR 8/3) pigment diffused in media; odour indistinct. Colony diameters (in mm after 120 h): 15 °C PDA 19–20, MEA 15–18, OA 11–13; 20 °C PDA 34–35, MEA 28–34, OA 20–23; 25 °C PDA 24–28, MEA 22–25, OA 19–20.Additional material examined: Korea: Gangwon-do, Yangyang-gun, 38°07′04.8″N, 128°38′00.8″E, isolated from Agarum cribrosum, 11 Sept. 2016, M.S. Park (KUC21361, KUC21362, KUC21363, and KUC21364).Notes: Arthrinium agari is phylogenetically related to A. arundinis (over 97.52% similarity in the ITS region, 93.74% in the TEF region, and 93.64% in the TUB region) (Figs. 1, 2). The two species also morphologically resemble each other. The two species have smooth, hyaline, branched, septate mycelium, and ampulliform conidiogenous cells that cluster on hyphae. Arthrinium arundinis and A. agari have similar conidia shape (brown, globose in surface view, lenticular in side view) (Crous & Groenewald 2013). However, A. agari can be distinguished from A. arundinis by its larger conidia (A. agari: 8.5–10.5 × 7.0–9.0 μm, A. arundinis: (5–)6–7 × 3–4 μm diam) (Crous & Groenewald 2013).Arthrinium agari and A. sinensis (non-sequenced species) also have similar conidia shape (globose in surface view, lenticular in side view). However, they can be distinguished by the shape of conidiogenous cell; cylindrical and sometimes ampulliform in A. agari, whereas lageniform in A. sinensis (Table 2).
Table 2
Summary of conidial morphology of Arthrinium species. Newly established species in this study are shown in bold
Species 1
Habitat 2
Isolation source
Country 3
Conidia in surface view
Conidia in side view
Shape
Diam (μm)
Shape
Diam (μm)
A. aureumA
A
Airborn spore
ES
globose
10–30 × 10–15
–
–
A. guizhouenseb
A
Airborn spore
CN
globose to elongate ellipsoid
5–7.5 × 4–7
–
–
A. mediterraneie
A
Airborn spore
ES
lentiform
9–9.5 × 7.5–9
–
–
A. serenensek
A
Airborn spore
ES
–
10–11 × 8–9.5
–
–
A. hispanicume
M
Beach sand
ES
globose to ellipsoid
7.5–8.5 × 6–7.5
lenticular
6.5
A. agari
M
Costariaceae
KR
globose to elongate ellipsoid
8.5–10.5 × 7–9
lenticular
5.5–7
A. arctoscopi
M
Egg of Arctoscopus japonicus
KR
globose to elongate ellipsoid
9.5–13 × 7.5–12
lenticular
5.5–7.5
A. koreanum
M
Egg of A. japonicus
KR
globose to ellipsoid
7.5–11 × 5.5–10
lenticular
4–6.5
A. algicolap*
M
Sargassaceae
UA
lentiform
10.5–15 × 6–8
–
–
A. sargassi
M
Sargassaceae
KR
globose to elongate ellipsoid
8.5–11.5 × 8–11
lenticular
5.5–7.5
A. fermenti
M
Seaweed
KR
globose to elongate ellipsoid
7.5–9 × 7–9
lenticular
6–7
A. marinum
M
Seaweed
KR
globose to elongate ellipsoid
9.5–13 × 7.5–10
lenticular
6–7.5
A. pusillispermum
M
Seaweed
KR
globose to subglobose, elongate cell
4–6.5 × 3–5.5
lenticular
3.5–4.5
A. taeanense
M
Seaweed
KR
globose to elongate ellipsoid
5–7 × 4–6
lenticular
4–5
A. saccharicolae
M/ P
Egg of A. japonicus/ Poaceae
KR/ NL
globose to ellipsoid
(7–)8–9(−10)
lenticular
(4–)5(−6)
A. saccharia
M/ P
Egg of A. japonicus/ Poaceae
UK/ KR
globose
(6–)7(−8)
lenticular
(3.5–)4
A. rasikravindraec
M/ P
Egg of A. japonicus/ Poaceae
KR/ CN
globose to ellipsoid
7–9.5 × 6.5–9
lenticular
5–6.5
A. arundinisa
M/ P
Sargassaceae/ Poaceae
IR/ KR
globose
(5–)6–7
lenticular
3–4
A. piptatherin
M/ P
Sargassaceae/ Poaceae
KR/ ES
globose to elongate ellipsoid
7.5–10 × 7–9
lenticular
4.5–6
A. mariia
M/ P
Seaweed/ Poaceae
KR/ HK
globose to elongate ellipsoid
8–10(−13)
lenticular
(5–)6(−8)
A. sporophleumI
P
Poaceae
DE
fusiform
11–14 × 6–8
–
–
A. descalsiin
P
Poaceae
ES
globose to ellipsoid
(5–)7(−8)
lenticular
6–7
A. mytilomorphumb
P
Poaceae
IN
fusiform or navicular
20–30 × 6–8.5
–
–
A. ovatuma
P
Poaceae
HK
oval to boldly ellipsoid
18–20
–
12–14
A. ibericumn
P
Poaceae
PT
globose to ellipsoid
(9–)10(−12)
lenticular
(6–)7(−8)
A. italicumn
P
Poaceae
IT, ES
globose
4–6 × 3–4
lenticular
–
A. hydeia
P
Poaceae
CN
globose
(15–)17–19(−22)
lenticular
11–12
A. bambusaeb
P
Poaceae
CN
subglobose to ellipsoid
11.5–15.5 × 7–14
–
–
A. jiangxienseb
P
Poaceae
CN
globose to ellipsoid, granular
7.5–10
lenticular
4.5–7
A. neogarethjonesiix
P
Poaceae
CN
globose to subglobose
20–35 × 15–30
–
–
A. pseudoparenchymaticumb
P
Poaceae
CN
globose to subglobose
13.5–27 × 12–23.5
–
–
A. pseudosinensea
P
Poaceae
NL
ellipsoid
8–10 × 7–10
–
7–8
A. setostromumz
P
Poaceae
CN
subglobose to obovoid
18–20 × 15–19
–
–
A. subroseumb
P
Poaceae
CN
globose to subglobose, ellipsoid
12–17.5 × 9–16
–
–
A. thailandicumi
P
Poaceae
CN/ TH
globose to elongate ellipsoid
5–9 × 5–8
lenticular
–
A. longistromumi
P
Poaceae
TH
asexual morph: Undetermined
–
–
–
A. neosubglobosad
P
Poaceae
CN
asexual morph: Undetermined.
–
–
–
A. subglobosah
P
Poaceae
TH
asexual morph: Undetermined.
–
–
–
A. macrosporumE*
P
Poaceae
CN
–
17–27
–
–
A. paraphaeospermumj
P
Poaceae
TH
globose to ellipsoid
10–19
lenticular
–
A. hyphopodiih
P
Poaceae
TH
globose to subglobose
5–10 × 4–8
–
–
A. chinenses
P
Poaceae
CN
subglobose to lenticular
8.5–12 × 5.5–9
–
–
A. qinlingensel
P
Poaceae
CN
globose to suborbicular
5–8
–
–
A. phaeospermuma
P
Poaceae
IR, KR
globose to ellipsoid
(9–)10(−12)
lenticular
6–7
A. gaoyouensel
P
Poaceae
CN
globose to elongate ellipsoid
5–8
lenticular
4–8
A. phragmitisa
P
Poaceae
IT
ellipsoid to ovoid
9–10(−12)
lenticular
(5–)6(−7)
A. esporlensen
P
Poaceae
ES
globose
(8–)9–12(−13)
lenticular
6–8
A. hysterinumn
P
Poaceae
ES
globose to obovoid
15–21 × 14–19
–
–
A. phyllostachydisy
P
Poaceae
CN
globose to subglobose, oval or irregular
5–6 × 4–6
–
–
A. yunnanumi
P
Poaceae
CN
globose to obovoid
17.5–26.5 × 15.5–25
–
–
A. spegazziniit*
P
Poaceae
AR
clavate, oval or elliptical
5–8 × 3–6
–
–
A. euphorbiaef
P
Poaceae
BD
circular or nearly circular
4–5.5 × 3–4
lenticular
–
A. lobatumt*
P
Poaceae
VE
oval or broadly ellipsoid
17–20 × 12–14
–
–
A. balearicumn
P
Poaceae
ES
asexual morph: Undetermined.
–
–
–
A. garethjonesiid
P
Poaceae
CN
asexual morph: Undetermined.
–
–
–
A. sinensisH*
P
Arecaceae
CN
rounded (conidiogenous cell lageniform)
9–12
lenticular
6–8
A. trachycarpumw
P
Arecaceae
CN
subglobose to elongate ellipsoid
6–8.5 × 4–6
–
–
A. locutum-pollinisv
P
Brassicaceae
CN
globose to elongate ellipsoid
8–15 × 5–9.5
–
–
A. camelliae-sinensisb
P
Brassicaceae, Theaceae
CN
globose to subglobose
9–13.5 × 7–12
–
–
A. caricicolar
P
Cyperaceae
DE
Ultimately cigar or diatom-shape
42–47 × 9–12
–
–
A. carinatumD*
P
Cyperaceae
DE
irregular shape
–
–
–
A. sporophleoidesr*
P
Cyperaceae
AU, DE
fusiform
11–14 × 5–5.5
polygonal
–
A. austriacumn*
P
Cyperaceae
AU
irregularly polygonal or rounded
9–12
polygonal
8–10
A. fuckeliin, I*
P
Cyperaceae
NO
quadrangular
11–16 × 11–16 × 5–9
–
–
A. globosumn*
P
Cyperaceae
FI
globose or almost round
8–10 × 7–9
–
–
A. japonicumu
P
Cyperaceae
JP
fusiform, navicular
38–56 × 14–20
–
–
A. kamtschaticumu*
P
Cyperaceae
RU
broadly U-shape with ends rounded
22–32 × 10–14
–
–
A. minusn
P
Cyperaceae
DE
curved, rounded at the ends
9–10 × 6–7
–
–
A. morthieriF*
P
Cyperaceae
CH
ovoid, subglobose, granular, rounded tips
18–20 × 4–7
–
–
A. muellerin*
P
Cyperaceae
CH
curved conidia
15–20 × 8–10
–
–
A. navicularen*
P
Cyperaceae
FI
irregular shape
–
–
–
A. puccinioidesn, r
P
Cyperaceae
FR
polygonal with rounded angles
9–11 × 8–9
–
–
A. sporophlaeumr*
P
Cyperaceae, Juncaecae
PT
broadly ovate to lemon-shaped
7–12 × 6–8
–
5–8
A. pterospermuma
P
Cyperaceae
AU, NZ
finely roughened irregular
15–25
–
8–10
A. cuspidatumr,C*
P
Cyperaceae, Juncaecae
CA, IN, US, ZA
horn-like tips (tips size: 7 μm)
21.5 × 10
–
–
A. jatrophaef
P
Euphorbiaceae
IN
spherical
6.5–9.5
lenticular
3–6.5
A. pseudospegazziniia
P
Euphorbiaceae
MY
globose
(7–)8–9
lenticular
5–6
A. obovatumb
P
Fagaceae
CN
obovoid, elongated to ellipsoidal
11–16.5/ 16–31 × 9–16
–
–
A. guttaB*
P
Fagaceae
IT
drop-shaped, oval
9–12 × 7–11
–
–
A. sphaerospermumr, t*
P
Iridaceae, Myrtaceae, Poaceae
FR
spherical or subspherical
7–8
–
–
A. ushuvaienser*
P
Juncaceae
AR
fusiform or navicular
17–25 × 6–9
–
–
A. luzulaet*
P
Juncaceae
CH
curved with horn-like tips
18–21 × 12–14
–
8–11
A. malaysianuma
P
Lauraceae, Euphorbiaceae
MY
globose
5–6
lenticular
3–4
A. kogelbergensea
P
Restionaceae
ZA
globose to ellipsoid
9–10 × 7–8
lenticular
4–5
A. dichotomanthib
P
Rosaceae
CN
globose to subglobose
9–15 × 6–12
lenticular
–
A. vietnamenseo
P
Rutaceae
VN
globose
5–6
–
3–4
A. xenocordellaa
P
Theaceae
CN
globose to somewhat ellipsoid
9–10
lenticular
6–7
A. aquaticumq
P
unknown
CN
globose to subglobose
9–11 × 8–10
–
–
A. scriptumG*
P
unknown
DE
egg-shape, pear-shape
–
–
–
A. urticaer
P
unknown
IN, TR, CU, BE
subspherical
4–6 × 3–4
–
–
A. gutiaeg
I
Gut of a grasshopper
IN
globose
4.5–6.0
lenticular
2–6
A. leucospermum*
–
–
–
–
–
–
–
The reference species were cited from the following marks: (Crous and Groenewald 2013), (Wang et al. 2018), (Singh et al. 2013), (Dai et al. 2016), (Larrondo 1992), (Sharma et al. 2014), (Crous et al. 2015), (Senanayake et al. 2015), (Dai et al. 2017), (Hyde et al. 2016), (Larrondo and Calvo 1990), (Jiang et al. 2018), (Wang et al. 2017), n (Pintos et al. 2019), o (Wang et al. 2017), (Jones et al. 2009), (Luo et al. 2019), (Cooke 1954), s (Jiang et al. 2020), (Ellis 1972), (Pollack and Benjamin, 2020), (Zhao et al. 2018), (Yan et al. 2019), (Hyde et al. 2020), (Yang et al. 2019), (Jiang et al. 2019), (Calvo 1980), (Rambelli et al. 2008), (Sukova 2004), (Harvard University Herbaria and Libraries (HUH), n.d.), (Joint Publications Research Service Arlington (JPRSA) VA, 1977), (Fungi of Great Britain and Ireland (FGBI), n.d.), (Rabenhorst and Lindau 1907), (Hyde et al. 1998), and (Minter and Cannon 2018). The species which not have any information about ITS, TEF, and TUB regions were marked by “*”. Sequenced species were presented with GenBank accession numbers in supplementary Table 1S. Habitats were indicated by following abbreviation: A, Air; M, Marine; M/P, Marine and Plant; P, Plant. Country is presented by standard defining code (ISO 3166-1alpha-2) for the names of country
Summary of conidial morphology of Arthrinium species. Newly established species in this study are shown in boldThe reference species were cited from the following marks: (Crous and Groenewald 2013), (Wang et al. 2018), (Singh et al. 2013), (Dai et al. 2016), (Larrondo 1992), (Sharma et al. 2014), (Crous et al. 2015), (Senanayake et al. 2015), (Dai et al. 2017), (Hyde et al. 2016), (Larrondo and Calvo 1990), (Jiang et al. 2018), (Wang et al. 2017), n (Pintos et al. 2019), o (Wang et al. 2017), (Jones et al. 2009), (Luo et al. 2019), (Cooke 1954), s (Jiang et al. 2020), (Ellis 1972), (Pollack and Benjamin, 2020), (Zhao et al. 2018), (Yan et al. 2019), (Hyde et al. 2020), (Yang et al. 2019), (Jiang et al. 2019), (Calvo 1980), (Rambelli et al. 2008), (Sukova 2004), (Harvard University Herbaria and Libraries (HUH), n.d.), (Joint Publications Research Service Arlington (JPRSA) VA, 1977), (Fungi of Great Britain and Ireland (FGBI), n.d.), (Rabenhorst and Lindau 1907), (Hyde et al. 1998), and (Minter and Cannon 2018). The species which not have any information about ITS, TEF, and TUB regions were marked by “*”. Sequenced species were presented with GenBank accession numbers in supplementary Table 1S. Habitats were indicated by following abbreviation: A, Air; M, Marine; M/P, Marine and Plant; P, Plant. Country is presented by standard defining code (ISO 3166-1alpha-2) for the names of countryS.L. Kwon, S. Jang & J.J. Kim, sp. nov.MycoBank MB834593(Fig. 4)
Fig. 4
Arthrinium arctoscopi (KUC21331). a-c Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; I-K, conidia attached to conidiogenous cells; scale bar = 10 μm
Arthrinium arctoscopi (KUC21331). a-c Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; I-K, conidia attached to conidiogenous cells; scale bar = 10 μmEtymology: ‘arctoscopi’ refers to the generic name of Arctoscopus japonicus, the substrate of on which it was found.Molecular diagnosis: Arthrinium arctoscopi is distinguished from phylogenetically most closely related species, A. obovatum, by unique single nucleotide polymorphisms in the three loci used in this study (Figs. 3S, 4S, 5S): ITS positions 112–124 (indel), 128–137 (indel), 190 (indel), 192 (G), 223 (T), 225 (indel), 226 (indel), 253–254 (indel), 618 (G), 621 (C), 624 (C), and 651 (G); TEF positions 32 (T), 33 (T), 76 (G), 131 (G), 132 (C), 145 (T), 148–150 (indel), 207 (indel), 208 (T), 210 (T), 211 (T), 269 (G), 304 (A), 305 (C), 316 (C), 320 (C), 324 (A), 328 (T), and 333 (A); TUB position 5 (T), 8 (C), 27 (G), 38 (T), 53 (G), 62 (A), 68 (C), 79 (C), 80 (A), 82 (G), 87 (T), 90 (A), 106 (A), 112 (T), 144 (A), 211 (indel), 212 (T), 225 (T), 227 (C), 311 (T), 334 (T), 467 (C), 479 (C), and 506 (C).Type: Korea: Gangwon-do, Goseong-gun, 38°28′44.0″N, 128°26′18.9″E, isolated from Egg masses of Arctoscopus japonicus, 10 Nov. 2016, M.S. Park (Herb. KCTC 46907 – holotype preserved in a metabolically inactive state; KUC21331 = NIBRFGC000501586, SFC20200506-M05 –ex-type cultures).Descriptions: Mycelium of smooth, hyaline, branched, septate, hyphae 2.5–4.0 μm diam. Conidiogenous cells aggregated in clusters on hyphae or solitary, at first hyaline, becoming pale green, cylindrical, sometimes ampulliform. Conidia brown, smooth to granular, globose to elongate ellipsoid in surface view, (9.5–)10–12 (− 13) × (7.5–)8.0–11 (− 12) μm ( = 11.1 × 10 μm, n = 30); lenticular in side view, with equatorial slit, 5.5–7.5 μm wide ( = 6.5 μm, n = 30), elongated cell observed.Culture: PDA: colonies thick, concentrically spreading with aerial mycelium, margin irregular; mycelia creamy white; sporulation was not observed; pigment absent in medium; odour indistinct. MEA: colonies flat, concentrically spreading with aerial mycelium, margin irregular; mycelia white; sporulation on hyphae after 2 weeks, spores black; pigment absent in medium; odour indistinct. OA: colonies thick, concentrically spreading with aerial mycelium, margin irregular; mycelia creamy pale yellow; sporulation not observed; very dark greyish brown (2.5Y 3/2) pigment diffused from centre into medium; odour indistinct. Colony diameters (in mm after 120 h): 15 °C PDA 9, MEA 13–15, OA 11–13; 20 °C PDA 18–24, MEA 18–22, OA 14–18; 25 °C PDA 5–7, MEA 4–5, OA 7–9.Additional material examined: Korea: Gangwon-do, Goseong-gun, 38°28′44.0″N, 128°26′18.9″E, isolated from egg masses of Arctoscopus japonicus, 10 Nov. 2016, M.S. Park (KUC21344, KUC21345, KUC21346, and KUC21347).Notes: Arthrinium arctoscopi is closely related to A. obovatum (98.84% similarity in the ITS region, 96.10% in the TEF region, and 94.31% in the TUB region) and A. aquaticum (99.80% similarity in the ITS region). However, A. arctoscopi can be distinguished from A. obovatum by the conidial shape and growth rate; the conidia of A. arctoscopi are globose to subglobose, whereas those of A. obovatum are obovoid or occasionally elongated to ellipsoid in shape (Wang et al. 2018). In addition, the growth rate of A. arctoscopi (7–9 mm in 7 d at 25 °C, PDA) is slower than that of A. obovatum (covering a 90 mm Petri dish in 7 d at 25 °C, PDA) (Wang et al. 2018). The conidial shape of A. arctoscopi is also slightly different from that of A. aquaticum (globose to subglobose conidia, 9–11 × 8–10 μm, = 10 × 9 μm, n = 20). Two non-sequenced species, A. algicola and A. sinensis, are morphologically similar to A. arctoscopi. The longer length and narrower width of A. algicola conidia (10.5–15 × 6–8 μm) and lageniform conidiogenous cell of A. sinensis distinguish them from A. arctoscopi (Table 2).S.L. Kwon, S. Jang & J.J. Kim, sp. nov.MycoBank MB834594(Fig. 5)
Fig. 5
Arthrinium fermenti (KUC21288). a-c, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom), g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μm
Arthrinium fermenti (KUC21288). a-c, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom), g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μmEtymology: ‘fermenti’ refers to the yeast-like odour of the cultures.Molecular diagnosis: Arthrinium fermenti is distinguished from the phylogenetically most closely related species, A. pseudospegazzinii, by unique single nucleotide polymorphisms in the three loci used in this study (Figs. 3S, 4S, 5S): ITS positions 32 (C), 43 (T), 81 (C), 283 (T), 318 (T), 567 (A), and 644 (indel); TEF positions 9 (C), 35 (C), 44 (A), 67 (A), 81–82 (indel), 84 (indel), 87 (C), 92 (G), 93 (A), 114 (G), 126 (C), 133 (T), 134 (G), 140 (T), 154 (G), 170 (C), 171 (T), 172 (T), 178 (indel), 181 (indel), 192 (C), 206 (indel), 208–211 (indel), 213 (T), 239 (G), 243 (T), 252 (A), 264 (C), 288 (G), 305 (C), 311 (C), 322 (indel), 330 (A), 337 (T), 357 (G), 367 (T), 375 (T), 392 (A), and 473 (T); TUB positions 1 (T), 9 (T), 18–22 (indel), 28 (A), 33 (C), 41 (G), 67 (A), 80 (A), 94 (G), 106 (T), 117 (T), 223 (A), 233 (T), 308 (A), 309 (T), 322 (T), 327 (C), 329 (C), 331 (C), 425 (C), and 437 (T).Type: Korea: Jeollanam-do, Haenam-gun, 34°26′07.2″N, 126°28′16.5″E, isolated from seaweed, 23 Apr. 2014, M.S. Park (Herb. KCTC 46903 – holotype preserved in a metabolically inactive state; KUC21289 = NIBRFGC000501584, SFC20140423-M86 – ex-type cultures).Description: Mycelium of smooth, hyaline, branched, septate, 2.0–4.0 μm diam. Conidiogenous cells aggregated in clusters on hyphae, at first hyaline, becoming pale brown, polyblastic, discrete, erect, ampulliform. Conidia brown, smooth to granular, globose to elongated ellipsoid, (7.5–)8.0–9.0 × 7.0–8.5 (− 9) μm ( = 8.32 × 7.4 μm, n = 30); lenticular in side view, with equatorial slit, 6.0–7.0 μm wide ( = 6.6 μm, n = 30).Culture: PDA: colonies thick, concentrically spreading with aerial mycelium, margin irregular; mycelia white to yellow, becoming pinkish to orange after 2 weeks; sporulation on hyphae, spores black; dark reddish brown (5YR 2.5/2) to yellow (2.5Y 8/8) pigment diffused from centre into media; odour strong baker’s yeast-like. MEA: colonies low, flat, concentrically spreading, thin, margin circular; mycelia white; sporulation was not observed; medium reverse with yellow pigment after 2 weeks; odour strong baker’s yeast–like. OA: colonies thick, concentrically spreading with aerial mycelium, margin irregular; mycelia at first white, reverse randomly pale pink to red-grape and pale yellow to brown after 2 weeks; sporulation on hyphae, spores black; dark yellowish brown (10YR 3/4, 3/6) to dark reddish brown (2.5YR 2.5/4) pigment diffused into the medium; odour strong baker’s yeast–like. Colony diameters (in mm after 120 h): 15 °C PDA 17, MEA 17–18, OA 13–16; 20 °C PDA 27–30, MEA 21–27, OA 15–18; 25 °C PDA 21–23, MEA 18–19, OA 14–16.Additional material examined: Korea: Jeollanam-do, Haenam-gun, 34°26′07.2″N, 126°28′16.5″E, isolated from seaweed, 23 Apr. 2014, M.S. Park (KUC21288).Notes: Arthrinium fermenti is closely related to A. pseudospegazzinii (98.96% similarity in the ITS region, 92.47% in the TEF region, and 95.00% in the TUB region) (Figs. 1, 2). It can be distinguished from the latter by conidial shape and colony colour. The conidia of A. fermenti are globose to elongate-ellipsoid, whereas A. pseudospegazzinii has uniformly globose conidia (Crous & Groenewald 2013). Moreover, while the colonies of A. pseudospegazzinii were light orange on PDA and dirty white with an olivaceous grey patch on OA and MEA (Crous & Groenewald 2013), A. fermenti colonies had a yellowish to reddish colour on OA and MEA and a strong yeast odour. Arthrinium globosum (non-sequenced species) has a conidia shape similar to that of A. fermenti – globose to subglobose. However, a lenticular shape in side view was not observed in A. globosum (Table 2).S.L. Kwon, S. Jang & J.J. Kim, sp. nov.MycoBank MB834596(Fig. 6)
Fig. 6
Arthrinium koreanum (KUC21332). A-C, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μm
Arthrinium koreanum (KUC21332). A-C, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μmEtymology: ‘koreanum’ refers to the country in which the type locality is located.Molecular diagnosis: Arthrinium koreanum is distinguished from the phylogenetically most closely related species, A. qinlingense, by unique single nucleotide polymorphisms in the three loci used in this study (Figs. 3S, 4S, 5S): ITS positions 80 (C), 92 (C), 245 (G), 250 (A), 253 (C), 258 (C), 274 (C), and 293 (G); TEF positions 16 (G), 43 (T), 44 (T), 91 (T), 94 (T), 133 (C), 135 (indel), 149 (indel), 152 (T), 153 (C), 154 (A), 156 (C), 157 (A), 161 (T), 162 (C), 199 (indel), 200 (T), 248 (A), 250 (G), 251 (T), 252 (G), 253 (C), 321 (C), 322 (A), 407 (C); TUB positions 4 (G), 5 (T), 18 (A), 38 (T), 49 (A), 64 (T), 68 (G), 78 (A), 80 (G), 89 (G), 98 (C), 113 (G), 114 (G), 199 (C), 309 (G), 326 (A), 410 (C), 413 (C), and 497 (T).Type: Korea: Gangwon-do, Goseong-gun, 38°28′44.0″N, 128°26′18.9″E, isolated from egg masses of Arctoscopus japonicus, 10 Nov. 2016, M.S. Park (Herb. KCTC 46908 – holotype preserved in a metabolically inactive state; KUC21332 = NIBRFGC000501587, SFC20200506-M06 – ex-type cultures).Description: Mycelium consisting of smooth, hyaline, branched, septate, hyphae 1.5–6.0 μm diam. Conidiogenous cells aggregated in clusters on hyphae, hyaline, cylindrical. Conidia brown, smooth to granular, globose to ellipsoid in surface view, (7.5–)8.0–10 (− 11) × (5.5–)6.5–9.5 (− 10) μm ( = 9.1 × 8.1 μm, n = 30); lenticular in side view, with equatorial slit, 4.0–6.5 μm wide ( = 5.3 μm, n = 30).Culture: PDA: colonies thick, concentrically spreading with aerial mycelium, margin irregular; mycelia white to pale yellow; sporulation not observed; olive-yellow (2.5Y 6/8) pigment diffused into medium; odour indistinct. MEA: colonies flat, concentrically spreading with sparse aerial mycelium, margin circular; mycelia white; sporulation on hyphae after 2 weeks, spores black; pigment absent in medium; odour indistinct. OA: colonies thick, concentrically spreading with aerial mycelium, margin irregular; mycelia white to orange; sporulation not observed; dark reddish brown (5YR 4/6) pigment diffused in media; odour indistinct. Colony diameters (in mm after 120 h): 15 °C PDA 17–18, MEA 15–19, OA 16–17; 20 °C PDA 27–31, MEA 20–23, OA 27–28; 25 °C PDA 6–7, MEA 3–6, and OA 4–5.Additional material examined: Korea: Gangwon-do, Goseong-gun, 38°28′44.0″N, 128°26′18.9″E, isolated from egg masses of Arctoscopus japonicus, 10 Nov. 2016, M.S. Park (KUC21348, KUC21349, and KUC21350).Notes: Arthrinium koreanum is closely related to A. qinlingense (98.48% similarity in the ITS region, 94.92% in the TEF region, and 94.85% in the TUB region) (Figs. 1, 2). They can be distinguished by their conidial sizes; 7.5–11 × 5.5–10 μm in A. koreanum vs. 5–8 μm in diameter in A. qinlingense (Jiang et al. 2018). Arthrinium koreanum has a similar conidia shape to that of the two non-sequenced species, A. globosum and A. sphaerospermum. However, the conidia of the latter two species only have globose to subglobose shape, and lenticular shape is not observed in side view (Table 2).S.L. Kwon, S. Jang & J.J. Kim, sp. nov.MycoBank MB834595(Fig. 7)
Fig. 7
Arthrinium marinum (KUC21328). a-c, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k conidia attached to conidiogenous cells; scale bar = 10 μm
Arthrinium marinum (KUC21328). a-c, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k conidia attached to conidiogenous cells; scale bar = 10 μmEtymology: ‘marinum’ refers to the marine origin.Molecular diagnosis: Arthrinium marinum is distinguished from the phylogenetically most closely related species, A. rasikravindrae, by unique single nucleotide polymorphisms in the three loci used in this study (Figs. 3S, 4S, 5S): ITS positions 100% similarity; TEF positions 191 (T), 253 (C), 256 (A), 319 (A), and 372 (C); TUB positions 2 (T), 15 (A), 20 (G), 30 (C), 69 (G), 111 (indel), 314 (G), 363 (T), 437 (C), and 443 (C).Type: Korea: Jeollanam-do, Suncheon-si, 34°50′46.9″N, 127°31′31.4″E, isolated from seaweed, 23 Apr. 2014, M.S. Park (Herb. KCTC 46905 – holotype preserved in a metabolically inactive state; KUC21328 = NIBRFGC000501583, SFC20140423-M02 –ex-type cultures).Description: Mycelium superficial, composed of smooth, hyaline, branched, septate, 3.5–6.0 μm diam. Hyphae. Conidiogenous cells aggregated in clusters on hyphae or solitary, hyaline, erect, ampulliform. Conidia brown, smooth to granular, globose to elongate ellipsoid in surface view, (9.5–)10–12 (− 13) × (7.5–)8.0–10 μm ( = 11.1 × 9.4 μm, n = 30); lenticular in side view, with equatorial slit, 6.0–7.5 μm wide ( = 7.1 μm, n = 30).Culture: PDA: colonies thick and dense, concentrically spreading, margin irregular; mycelia white to pale yellow; sporulation was not observed; pale yellow (5Y 8/4) pigment diffused into medium; odour indistinct. MEA: colonies low, flat, concentrically spreading with sparse aerial mycelium, margin circular; mycelia white colored; sporulation on hyphae around centre after 2 weeks, spores black; pigment absent in medium; odour indistinct. OA: colonies thick, concentrically spreading with aerial mycelium, margin circular; mycelia white to pale yellow; sporulation not observed; yellow to pale green (2.5Y 5/6) pigment diffused into medium; odour indistinct. Colony diameters (in mm after 120 h): 15 °C PDA 7–9, MEA 6–12, OA 4–5; 20 °C PDA 16–17, MEA 14–21, OA 7–9; 25 °C PDA 35–47, MEA 32–35, and OA 28–32.Additional material examined: Korea: Jeollanam-do, Suncheon-si, 34°50′46.9″N, 127°31′31.4″E, isolated from seaweed, 23 Apr. 2014, M.S. Park (KUC21353, KUC21354, KUC21355, and KUC21356).Notes: Although Arthrinium marinum and A. rasikravindrae were not distinguished on ITS alone (100% similarity in the ITS region), these species formed two distinct clades based on the combined analysis of the ITS, TUB, and TEF regions (99.08% in the TEF region and 97.97% in the TUB region) (Figs. 1, 2). They can also be distinguished by their growth rates: A. marinum (16–17 mm in 5 d on PDA at 20 °C) had a slower growth rate than A. rasikravindrae KUC21327 (34–39 mm in 5 d on PDA at 20 °C).Non-sequenced species, Arthrinium algicola, has a very similar conidia shape to that of A. marinum, However, they are distinguished by the conidia size; 10.5–15 × 6–8 μm in A. algicola and (9.5–)10–12(− 13) × (7.5–)8–10 μm in A. marinum (Table 2).S.L. Kwon, S. Jang & J.J. Kim, sp. nov.MycoBank MB834597(Fig. 8)
Fig. 8
Arthrinium pusillispermum (KUC21321). a-c, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μm
Arthrinium pusillispermum (KUC21321). a-c, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μmEtymology: ‘pusillus’, tiny and ‘spermum’ spores.Molecular diagnosis: Arthrinium pusillispermum is distinguished from the phylogenetically most closely related species, A. gutiae, by unique single nucleotide polymorphisms in the three loci used in this study (Figs. 3S, 4S, 5S): ITS positions 43 (C), 260 (T), and 546 (T); TEF positions 1–17 (indel), 26–38 (indel), 43–46 (indel), 64–69 (indel), 76–82 (indel), 84–96 (indel), 112–115 (indel), 125–131 (indel), 137–141 (indel), 151–172 (indel), 173 (C), 174 (A), 175 (G), 178 (G), 180 (T), 192 (T), 193 (indel), 194 (G), 209 (A), 213 (indel), 228 (A), 230 (C), 243 (C), 251 (C), 252 (A), 256 (A), 260 (A), 261 (A), 264 (T), 268 (G), 269 (T), 273–276 (indel), 287–289 (indel), 293 (A), 294 (G), 308 (A), 310 (G), 313 (C), 314 (indel), 315 (C), 321 (T), 325 (indel), 327 (indel), 328 (A), 332 (indel), 337 (T), 356 (C), 358 (A), 360 (T), 364 (C), 374 (A), 395 (C), and 473 (T); TUB position 38 (C), 75 (T), 89 (G), 144 (A), and 498–506 (indel).Type: Korea: Chungcheongnam-do, Taean-gun, 36°50′14.3″N, 126°11′04.7″E, isolated from Seaweed, 19 Mar. 2016, S. Jang (Herb. KCTC 46906 – holotype preserved in a metabolically inactive state; KUC21321 = NIBRFGC000501585 – ex-type culture).Description: Mycelium consisting of smooth, hyaline, branched, septate, 1.5–4.5 μm diam. Conidiogenous cells aggregated in clusters on hyphae, hyaline, cylindrical. Conidia brown, smooth to granular, globose to subglobose in surface view, 4.0–6.0 (− 6.5) × (3.0–)3.5–5.0 (− 5.5) μm ( = 5.1 × 4.2 μm, n = 30); lenticular in side view, with equatorial slit, 3.5–4.5 μm wide ( = 4.1 μm, n = 30), elongated cell present.Culture: PDA: colonies thick around centre, concentrically spreading with aerial mycelium, margin circular; mycelia white, pale yellow to grey; sporulation was not observed; greenish black (10GY 2.5/1) pigment diffused in medium; odour indistinct. MEA: colonies abundant, flat, concentrically spreading with sparse aerial mycelium, margin irregular; mycelia white to gray colored; sporulation was not observed; pigment absent in medium; odour indistinct. OA: colonies thick, concentrically spreading with aerial mycelium, margin irregular; mycelia white to pale brown and grey to dark grey; sporulation on hyphae around the centre after 2 weeks, spores black; greenish black (10Y 2.5/1) to very dark greenish grey (10Y 3/1) pigment diffused in medium; odour indistinct. Colony diameters (in mm after 120 h): 15 °C PDA 19–25, MEA 10–12, OA 11–12; 20 °C PDA 25–39, MEA 19–25, OA 22–24; 25 °C PDA 9–15, MEA 6–18, and OA 6–20.Additional material examined: Korea: Chungcheongnam-do, Taean-gun, 36°50′14.3″N, 126°11′04.7″E, isolated from seaweed 19 Mar. 2016, S. Jang (KUC21357).Notes: Arthrinium pusillispermum is closely related to A. gutiae (99.44% similarity in the ITS region, 88.52% in the TEF region, and 98.98% in the TUB region) (Figs. 1, 2). Arthrinium pusillispermum is distinguished from A. gutiae by the shape of the conidiogenous cells and the substrate: A. pusillispermum has cylindrical conidiogenous cells and was isolated from seaweed, whereas A. gutiae has lageniform conidiogenous cells and was isolated from the gut of grasshoppers (Crous et al. 2015). Arthrinium pusillispermum can be distinguished from the 22 non-sequenced species by its small conidia size (Table 2).S.L. Kwon, S. Jang & J.J. Kim, sp. nov.MycoBank MB834598(Fig. 9)
Fig. 9
Arthrinium sargassi (KUC21232). a-c, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μm
Arthrinium sargassi (KUC21232). a-c, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μmEtymology: ‘sargassi’ refers to the genus name of Sargassum sp., the substrate of the type material.Molecular diagnosis: Arthrinium sargassi is distinguished from the phylogenetically related species, A. hydei, by unique single nucleotide polymorphisms in the three loci used in this study (Figs. 3S, 4S, 5S): ITS positions 31 (C), 47 (indel), 91 (C), 95 (indel), 309 (T), and 644 (indel); TEF positions 15 (C), 27 (C), 30 (T), 37 (C), 46 (T), 47 (indel), 63 (indel), 64 (C), 66 (T), 67 (A), 92 (C), 93 (A), 95 (G), 140 (G), 152 (C), 153 (A), 155 (G), 160 (T), 193 (T), 222 (C), 224 (A), 225 (C), 253 (C), 254 (C), 262 (C), 265 (T), 293 (A), 328 (A), 336 (A), 358 (T), 367 (A), 371 (T), 374 (C), 376 (A), 386 (C), 392 (A), and 449 (C); TUB positions 10 (C), 18 (C), 22 (T), 23 (G), 30 (T), 45 (T), 47 (A), 50 (G), 52 (A), 69 (A), 70 (C), 80 (G), 106 (T), 133 (A), 145 (A), 225 (A), 230 (G), 380 (T), 416 (T), and 437 (T).Type: Korea: Jeju-do, 33°23′39.2″N, 126°14′23.0″E, isolated from Sargassum fulvellum, 10 Jan. 2015, S. Jang (Herb. KCTC 46901 – holotype preserved in a metabolically inactive state; KUC21228 = NIBRFGC000501578 – ex-type culture).Description: Mycelium consisting of smooth, hyaline, branched, septate, 2.0–5.0 μm diam. Conidiogenous cells aggregated in clusters on hyphae or solitary, at first hyaline, becoming pale brown, basauxic, polyblastic, sympodial, erect, cylindrical. Conidia brown, smooth to granular, globose to subglobose in surface view, (8.5–)9.5–11 (− 11.5) × (8.0–)8.5–10 (− 11) μm ( = 10.4 × 9.4 μm, n = 30); lenticular in side view, with equatorial slit, 5.5–7.5 μm wide ( = 6.5 μm, n = 30), elongated cell present.Culture: PDA: colonies thick, flat, concentrically spreading with aerial mycelium, margin circular; mycelia white to grey, reverse sparsely pale yellow; sporulation on hyphae and in media after 2 weeks, randomly dense, spores black; yellow (10YR 8/8) pigment diffused in medium from centre, sometimes remaining as dark grey spots; odour indistinct. MEA: colonies slightly thick, flat, concentrically spreading with aerial mycelium, margin circular; mycelia white coloured; sporulation on hyphae and in media after 2 weeks, randomly dense, spores black; pigment absent, sometimes remaining dark grey spots in medium; odour indistinct. OA: colonies thick and dense, flat, concentrically spreading with aerial mycelium, margin circular; mycelia white, reverse usually yellow to green from the centre, sometimes becoming pinkish after 2 weeks; sporulation on hyphae, randomly dense after 2 weeks, spores black; yellow (2.5Y 7/8) pigment diffused in medium; odour indistinct. Colony diameters (in mm after 120 h): 15 °C PDA 10–12, MEA 15–23, OA 14–15; 20 °C PDA 21–26, MEA 20–27, OA 25–27; 25 °C PDA 29–32, MEA 26–28, and OA 30–34.Additional material examined: Korea: Jeju-do, 33°23′39.2″N, 126°14′23.0″E, isolated from Sargassum fulvellum, 10 Jan. 2015, S. Jang (KUC21232, KUC21284, and KUC21287).Notes: Arthrinium sargassi has morphological characteristics similar to those of other species in clade B. It can be distinguished from A. aureum (globose to ellipsoid conidia, 10–30 × 10–15 μm) and A. hydei (globose conidia, 17–19 μm diam) in the much smaller conidia, (8.5–)9.5–11 (− 11.5) × (8.0–)8.5–10 (− 11) μm ( = 10.4 × 9.4 μm, n = 30) (Calvo 1980; Crous & Groenewald 2013). Arthrinium rasikravindrae KUC21327 (34–39 mm in 5 d on PDA at 20 °C) and A. marinum (16–17 mm in 5 d on PDA at 20 °C) can be distinguished from A. sargassi (21–26 mm in 5 d on PDA at 20 °C) by their growth rate. Unfortunately, there are no data regarding the growth rate of A. chinense, but it can be clearly separated from A. sargassi based on the phylogenetic analysis (Figs. 1, 2). Arthrinium sargassi is morphologically similar to A. sinensis, a non-sequenced species. However, the shape of conidiogenous cell differs between them; lageniform in A. sinensis and cylindrical in A. sargassi (Table 2).S.L. Kwon, S. Jang & J.J. Kim, sp. nov.MycoBank MB834599(Fig. 10)
Fig. 10
Arthrinium taeanense (KUC21322). A-C, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μm
Arthrinium taeanense (KUC21322). A-C, Colonies on PDA (a), MEA (b), and OA (c) (top); d-f, colonies on PDA (d), MEA (e), and OA (f) (bottom); g-h, conidia under SEM; i-k, conidia attached to conidiogenous cells; scale bar = 10 μmEtymology: ‘taeanense’ refers to the type locality.Molecular diagnosis: Arthrinium taeanense is distinguished from the phylogenetically most closely related species, A. gutiae, by unique single nucleotide polymorphisms in the three loci used in this study (Figs. 3S, 4S, 5S): ITS positions 22 (A), 32 (indel), 43 (G), 48 (C), 109 (indel), 113 (T), 121 (T), 129–146 (indel), 149–156 (indel), 189–192 (indel), 202–211 (indel), 213 (indel), 221 (T), 227–228 (indel), 248–250 (indel), 253 (C), 257 (T), 263 (A), 283 (G), 300 (T), 308 (C), 535 (C), 536 (G), 546 (T), 591 (A), 592 (T), and 593 (T); TEF positions 173 (T), 174 (C), 175 (A), 176 (C), 179 (C), 180 (T), 189 (G), 194 (G), 200 (indel), 209 (A), 213 (indel), 214 (C), 226 (A), 228 (A), 229 (A), 230 (C), 251 (C), 252 (T), 253 (T), 260 (A), 263 (C), 264 (T), 265 (A), 266 (T), 269 (T), 270 (T), 272 (G), 273–275 (indel), 278 (T), 280 (indel), 281 (A), 287 (G), 289 (C), 293 (A), 302 (indel), 304 (indel), 307 (G), 308 (G), 309 (indel), 310 (A), 313 (A), 314 (indel), 318 (G), 334 (G), 337 (T), 356 (A), 357 (G), 358 (A), 371 (T), 374 (A), 375 (G), 376 (G), 378 (C), 395 (C), 404 (C), 467 (T), and 600 (C); TUB positions 2 (T), 3 (C), 7 (C), 10 (C), 11–12 (indel), 16 (G), 17 (T), 19 (A), 20 (C), 21 (A), 22 (T), 23 (C), 25 (C), 26 (G), 28 (G), 29 (A), 33 (C), 34 (C), 35 (T), 36 (C), 38 (C), 41 (T), 44 (A), 46 (G), 53 (A), 54 (T), 68 (T), 69 (C), 71 (A), 72 (A), 73 (T), 74 (A), 75 (T), 78 (T), 80 (G), 81 (C), 85 (G), 87 (G), 89 (G), 95 (C), 108 (G), 111 (G), 114 (A), 129 (T), 138 (C), 140 (T), 143 (T), 146 (T), 158 (C), 170 (C), 176 (C), 184 (A), 198 (C), 205 (A), 207 (C), 211–212 (indel), 214–216 (indel), 231 (G), 308 (C), 309 (C), 312 (C), 313 (T), 319 (T), 324 (C), 326 (G), 327 (C), 328 (C), 329 (T), 344 (T), 347 (T), 353 (C), 392 (A), 395 (T), 410 (C), 413 (G), 416 (C), 425 (C), 428 (T), 434 (C), 437 (G), 455 (T), 476 (T), 479 (C), and 485 (C).Type: Korea: Chungcheongnam-do, Taean-gun, 36°50′14.3″N, 126°11′04.7″E, isolated from Seaweed, 19 Mar. 2016, S. Jang (Herb. KCTC 46910 – holotype preserved in a metabolically inactive state; KUC21322 = NIBRFGC000501589 – ex-type culture).Description: Mycelium consisting of smooth, hyaline, branched, septate, 2.0–4.5 μm diam. Conidiogenous cells aggregated in clusters on hyphae, hyaline, cylindrical. Conidia brown, smooth to granular, globose to elongate ellipsoid in surface view, (5.0–)5.5–6.5 (− 7.0) × 4.0–5.5 (− 6.0) μm ( = 6 × 4.7 μm, n = 30); lenticular in side view, with an equatorial slit, 4.0–5.0 μm wide ( = 4.7 μm, n = 30), elongated cell observed.Culture: PDA, colonies thick, concentrically spreading with aerial mycelium, margin circular; mycelia white to yellow, gray and partially pale orange colored; sporulation was not observed; pale yellow (5Y 8/3) pigment to yellow (2.5Y 8/8) pigment diffused in media after 2 weeks; odour indistinct. MEA, colonies thick, flat, concentrically spreading with aerial mycelium, margin circular; mycelia white to yellowish gray colored; sporulation was not observed; pigment absent in medium; odour indistinct. OA, colonies very thick, concentrically spreading with aerial mycelium, margin circular; mycelia white to yellow and orange to brown colored; sporulation was not observed; yellowish brown (10YR 5/8) pigment diffused in media after 2 weeks; odour indistinct. Colony diameters (in mm after 120 h): 15 °C PDA 7–15, MEA 10–20, OA 10–11; 20 °C PDA 28–36, MEA 24–32, OA 21–24; 25 °C PDA 36–39, MEA 34–35, and OA 39–41.Additional material examined: Korea: Chungcheongnam-do, Taean-gun, 36°50′14.3″N, 126°11′04.7″E, isolated from seaweed, 19 Mar. 2016, S. Jang (KUC21358, KUC21359).Notes: Arthrinium taeanense is most closely related to A. pusillispermum (95.30% similarity in the ITS region, 80.84% in the TEF region, and 79.30% in the TUB region) and A. gutiae (95.30% similarity in the ITS region, 85.19% in the TEF region, and 78.3% in the TUB region) (Fig. 1). There were no noticeable morphological characters that helped separate these species, but the long stem branches clearly indicate that they represent different, phylogenetically well-separated taxa. Arthrinium taeanense can be distinguished from the 22 non-sequenced species by its small conidia size (Table 2).
DISCUSSION
A total of 14 Arthrinium species associated with marine environments in Korea was identified based on morphological and molecular phylogenetic analyses. Five species, A. arundinis, A. marii, A. rasikravindrae, A. sacchari, and A. saccharicola, had already been reported from marine environments (Hong et al. 2015; Park et al. 2018), whereas A. piptatheri was reported here for the first time from this habitat. The newly recognized taxa represented six species isolated from macroalgae (A. agari, A. fermenti, A. marinum, A. pusillispermum, A. sargassi, and A. taeanense) and two extracted from the egg masses of sailfin sandfish (A. arctoscopi and A. koreanum). To date, the majority of the described Arthrinium species have been isolated from various terrestrial habitats (Tsukamoto et al. 2006; Kim et al. 2011; Crous & Groenewald 2013), whereas only eight Arthrinium species have been reported from marine environments: A. algicola, A. arundinis, A. hispanicum, A. marii, A. phaeospermum, A. rasikravindrae, A. sacchari, and A. saccharicola (Miao et al. 2006; Jones et al. 2009; Crous & Groenewald 2013; Hong et al. 2015; Larrondo 1992; Li et al. 2017; Park et al. 2018; Pintos et al. 2019).As mentioned, conidial shape, conidiophores, and presence or absence of sterile cells and setae were previously used for the infrageneric classification and delimitation of species (Schmidt & Kunze 1817; Hughes 1953; Minter 1985). However, because these microscopic features often overlap between taxa, it is difficult to solely rely on them to distinguish species. Therefore, the combined use of molecular and morphological characters, in combination with the physiological features of the cultures, is required to identify species in Arthrinium. For example, the newly recognized species, A. marinum, A. pusillispermum, and A. taeanense, cannot be distinguished from their close relatives based on morphology alone; however, the three species could be distinguished by differences in their growth rate and by the molecular data.Arthrinium species can be divided into two groups based on conidial shape: one group with an irregular conidial shape, similar to a cashew-nut (A. kamischaticum) or a polygon (A. puccinioides), and the other with globose to ellipsoid conidia (Singh et al. 2013). All Arthrinium species in this study produced globose to subglobose or globose to ellipsoid conidia. This corresponds to the conidial shape of other Arthrinium species derived from marine environments (Larrondo 1992; Crous and Groenewald 2013; Singh et al. 2013). Among the species with ellipsoid conidia, those from marine environments generally have more elongated conidia than those from terrestrial environments (Table 2). There are a number of Arthrinium species described only from their sexual morph (e.g., A. balearicum, A. garethjonesii, A. longistromum, A. neosubglobosa, A. subglobosa) (Senanayake et al. 2015; Dai et al. 2016; Dai et al. 2017; Pintos et al. 2019). Unfortunately, no sexual morph is known in any of the marine species. This further increases the difficulty of identifying Arthrinium species through morphological features alone.DNA sequencing data available for Arthrinium species has been steadily increasing in recent years (Crous and Groenewald 2013; Wang et al. 2018; Pintos et al. 2019). Currently 84 species of Arthrinium are recognized; of these, sequence information on the ITS is available for 62 species, TUB for 51, and TEF for 45 species. This has contributed to an increase in newly recognized species and aids in their accurate and rapid identification (Wang et al. 2018; Pintos et al. 2019). ITS by itself is limited in its ability to identify species within Arthrinium. The use of TUB, TEF, and multigene sequence data (ITS, TUB, and TEF) has increased the accurate identification and phylogenetic relationships in Arthrinium. This study generated 67 sequence datasets for three gene regions (ITS, TUB, and TEF), which will also contribute to furthering the study of the genus Arthrinium.According to our previous studies on marine Arthrinium species, the 14 identified in this study can be expected to have high biological activity. However, it is not clear whether they are active in the actual marine environment and what the ecological role of Arthrinium species is. We expect to better understand their role in the environment through various studies of Arthrinium species in the future, including the discovery of further novel species and an exploration of their biological properties.
CONCLUSIONS
Our study underlines the notion that the diversity of Arthrinium species is still poorly known. More than half of the Arthrinium species isolated from a limited marine environment resulted to be new to science. According to our results, many more novel taxa are to be expected from marine environments around the world. Further studies in other environments are needed to assess the distribution of these species. Our results also show that a polyphasic approach to the taxonomy of Arthrinium, integrating molecular phylogeny of ITS and protein-coding markers, conidial features and culture characteristics are the most reliable approach to delimit and recognize species in this genus.Additional file 1: Fig. S1. ML tree based on the TEF region. The numbers at the nodes indicate ML bootstrap support (BS) > 75% and Bayesian posterior probabilities (PP) > 0.75 as BS/PP. The thickened branches indicate support greater than 85% for BS and 0.95 for PP. A hyphen (‘-‘) indicates values of BS < 70% or PP < 0.75. Ex-holotype strains are indicated with asterisks (‘*’). The fungal cultures examined in this study are shown in bold. Red boxes indicate the novel species. The numbers in the brackets indicate strain number. The scale bar indicates the nucleotide substitutions per position. Fig. S2. ML tree based on the TUB region. The numbers at the nodes indicate ML bootstrap support (BS) > 75% and Bayesian posterior probabilities (PP) > 0.75 as BS/PP. The thickened branches indicate support greater than 85% for BS and 0.95 for PP. A hyphen (‘-‘) indicates values of BS < 70% or PP < 0.75. Ex-holotype strains are indicated with asterisks (‘*’). The fungal cultures examined in this study are shown in bold. Red boxes indicate the novel species. The numbers in the brackets indicate strain number. The scale bar indicates the nucleotide substitutions per position. Fig. S3. Sequence alignments of ITS regions of eight novel Arthrinium. Fig. S4. Sequence alignments of TEF regions of eight novel Arthrinium.
Fig. S5. Sequence alignments of TUB regions of eight novel Arthrinium.Additional file 2: Table S1. Sequence information of Arthrinium species. Newly established species in this study are shown in bold.
Authors: P W Crous; M J Wingfield; J J Le Roux; D M Richardson; D Strasberg; R G Shivas; P Alvarado; J Edwards; G Moreno; R Sharma; M S Sonawane; Y P Tan; A Altés; T Barasubiye; C W Barnes; R A Blanchette; D Boertmann; A Bogo; J R Carlavilla; R Cheewangkoon; R Daniel; Z W de Beer; M de Jesús Yáñez-Morales; T A Duong; J Fernández-Vicente; A D W Geering; D I Guest; B W Held; M Heykoop; V Hubka; A M Ismail; S C Kajale; W Khemmuk; M Kolařík; R Kurli; R Lebeuf; C A Lévesque; L Lombard; D Magista; J L Manjón; S Marincowitz; J M Mohedano; A Nováková; N H Oberlies; E C Otto; N D Paguigan; I G Pascoe; J L Pérez-Butrón; G Perrone; P Rahi; H A Raja; T Rintoul; R M V Sanhueza; K Scarlett; Y S Shouche; L A Shuttleworth; P W J Taylor; R G Thorn; L L Vawdrey; R Solano-Vidal; A Voitk; P T W Wong; A R Wood; J C Zamora; J Z Groenewald Journal: Persoonia Date: 2015-12-04 Impact factor: 11.051
Authors: Michael Sun Lul Kwon; Myung Soo Park; Seokyoon Jang; Young Min Lee; Young Mok Heo; Joo-Hyun Hong; Hanbyul Lee; Yeongseon Jang; Ji-Hyun Park; Changmu Kim; Gyu-Hyeok Kim; Young Woon Lim; Jae-Jin Kim Journal: IMA Fungus Date: 2022-05-16 Impact factor: 8.044
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