Literature DB >> 34058714

Theoretical classification of exchange geometries from the perspective of NMR relaxation dispersion.

Fa-An Chao1, Yue Zhang2, R Andrew Byrd3.   

Abstract

NMR relaxation dispersion experiments have been widely applied to probe important conformational exchange of macro-molecules in many biological systems. The current improvements in computational techniques as well as the theoretical breakthroughs make the quantitative data analysis of complex exchange models possible. However, the topology of a given exchange model is also one of the main factors affecting the solution of Bloch-McConnell equation. The lack of a theoretical analysis of the exchange topologies at n-site exchange hinders further progress of such data analysis. Here, using graph theory, we reveal the topological complexity of n-site exchange and present all exchange models when n is less than 6. Furthermore, we introduce an alternative way, using machine learning, to select an exchange model based on a set of relaxation dispersion data without fitting them with every individual exchange model. Published by Elsevier Inc.

Entities:  

Keywords:  Graph theory; Machine learning; N-site exchange; NMR relaxation dispersion experiments

Mesh:

Year:  2021        PMID: 34058714      PMCID: PMC8205974          DOI: 10.1016/j.jmr.2021.107003

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.734


  20 in total

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