Literature DB >> 34050198

Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study.

David García-García1, María Isabel Vigo1, Eva S Fonfría2, Zaida Herrador3, Miriam Navarro2, Cesar Bordehore4,5.   

Abstract

The number of new daily infections is one of the main parameters to understand the dynamics of an epidemic. During the COVID-19 pandemic in 2020, however, such information has been underestimated. Here, we propose a retrospective methodology to estimate daily infections from daily deaths, because those are usually more accurately documented. Given the incubation period, the time from illness onset to death, and the case fatality ratio, the date of death can be estimated from the date of infection. We apply this idea conversely to estimate infections from deaths. This methodology is applied to Spain and its 19 administrative regions. Our results showed that probable daily infections during the first wave were between 35 and 42 times more than those officially documented on 14 March, when the national government decreed a national lockdown and 9 times more than those documented by the updated version of the official data. The national lockdown had a strong effect on the growth rate of virus transmission, which began to decrease immediately. Finally, the first inferred infection in Spain is about 43 days before the official data were available during the first wave. The current official data show delays of 15-30 days in the first infection relative to the inferred infections in 63% of the regions. In summary, we propose a methodology that allows reinterpretation of official daily infections, improving data accuracy in infection magnitude and dates because it assimilates valuable information from the National Seroprevalence Studies.

Entities:  

Year:  2021        PMID: 34050198     DOI: 10.1038/s41598-021-90051-7

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  8 in total

1.  Seven challenges for metapopulation models of epidemics, including households models.

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2.  Wrong but Useful - What Covid-19 Epidemiologic Models Can and Cannot Tell Us.

Authors:  Inga Holmdahl; Caroline Buckee
Journal:  N Engl J Med       Date:  2020-05-15       Impact factor: 91.245

3.  Epidemiological effects of group size variation in social species.

Authors:  Damien Caillaud; Meggan E Craft; Lauren Ancel Meyers
Journal:  J R Soc Interface       Date:  2013-04-10       Impact factor: 4.118

4.  Effect of non-pharmaceutical interventions to contain COVID-19 in China.

Authors:  Shengjie Lai; Nick W Ruktanonchai; Liangcai Zhou; Olivia Prosper; Wei Luo; Jessica R Floyd; Amy Wesolowski; Mauricio Santillana; Chi Zhang; Xiangjun Du; Hongjie Yu; Andrew J Tatem
Journal:  Nature       Date:  2020-05-04       Impact factor: 49.962

5.  Transmission dynamics and control measures of COVID-19 outbreak in China: a modelling study.

Authors:  Xu-Sheng Zhang; Emilia Vynnycky; Andre Charlett; Daniela De Angelis; Zhengji Chen; Wei Liu
Journal:  Sci Rep       Date:  2021-01-29       Impact factor: 4.379

Review 6.  COVID-19 in Spain: Transplantation in the midst of the pandemic.

Authors:  Beatriz Domínguez-Gil; Elisabeth Coll; Mario Fernández-Ruiz; Esther Corral; Francisco Del Río; Rafael Zaragoza; Juan J Rubio; Domingo Hernández
Journal:  Am J Transplant       Date:  2020-05-27       Impact factor: 9.369

7.  Modified SEIR and AI prediction of the epidemics trend of COVID-19 in China under public health interventions.

Authors:  Zifeng Yang; Zhiqi Zeng; Ke Wang; Sook-San Wong; Wenhua Liang; Mark Zanin; Peng Liu; Xudong Cao; Zhongqiang Gao; Zhitong Mai; Jingyi Liang; Xiaoqing Liu; Shiyue Li; Yimin Li; Feng Ye; Weijie Guan; Yifan Yang; Fei Li; Shengmei Luo; Yuqi Xie; Bin Liu; Zhoulang Wang; Shaobo Zhang; Yaonan Wang; Nanshan Zhong; Jianxing He
Journal:  J Thorac Dis       Date:  2020-03       Impact factor: 3.005

8.  Substantial undocumented infection facilitates the rapid dissemination of novel coronavirus (SARS-CoV-2).

Authors:  Ruiyun Li; Sen Pei; Bin Chen; Yimeng Song; Tao Zhang; Wan Yang; Jeffrey Shaman
Journal:  Science       Date:  2020-03-16       Impact factor: 47.728

  8 in total
  8 in total

1.  Identification of the first COVID-19 infections in the US using a retrospective analysis (REMEDID).

Authors:  David García-García; Enrique Morales; Cesar de la Fuente-Nunez; Isabel Vigo; Eva S Fonfría; Cesar Bordehore
Journal:  Spat Spatiotemporal Epidemiol       Date:  2022-05-10

2.  Caveats on COVID-19 herd immunity threshold: the Spain case.

Authors:  David García-García; Enrique Morales; Eva S Fonfría; Isabel Vigo; Cesar Bordehore
Journal:  Sci Rep       Date:  2022-01-12       Impact factor: 4.379

3.  Burden of COVID-19: a preliminary analysis in the population of Saudi Arabia.

Authors:  Syed Mohammed Basheeruddin Asdaq; Syed Imam Rabbani; Mohammed Kanan Alshammari; Reem Saud Alshammari; Mehnaz Kamal; Mohd Imran; Noufah Aqeel AlShammari; May Faiz Al Twallah; Abdulmjeed Hussain Alshahrani
Journal:  PeerJ       Date:  2022-04-07       Impact factor: 2.984

4.  Dynamical regulations on mobility and vaccinations for controlling COVID-19 spread.

Authors:  Mevan Rajakaruna; Harshana Rajakaruna; Rupika Rajakaruna
Journal:  Sci Rep       Date:  2022-03-03       Impact factor: 4.379

5.  Estimated number of deaths directly averted in people 60 years and older as a result of COVID-19 vaccination in the WHO European Region, December 2020 to November 2021.

Authors:  Margaux Mi Meslé; Jeremy Brown; Piers Mook; José Hagan; Roberta Pastore; Nick Bundle; Gianfranco Spiteri; Giovanni Ravasi; Nathalie Nicolay; Nick Andrews; Tetiana Dykhanovska; Joël Mossong; Małgorzata Sadkowska-Todys; Raina Nikiforova; Flavia Riccardo; Hinta Meijerink; Clara Mazagatos; Jan Kyncl; Jim McMenamin; Tanya Melillo; Stella Kaoustou; Daniel Lévy-Bruhl; Freek Haarhuis; Rivka Rich; Meaghan Kall; Dorit Nitzan; Catherine Smallwood; Richard G Pebody
Journal:  Euro Surveill       Date:  2021-11

6.  Public Interest and Accessibility of Telehealth in Japan: Retrospective Analysis Using Google Trends and National Surveillance.

Authors:  Takuya Kinoshita; Takehiro Matsumoto; Naota Taura; Tetsuya Usui; Nemu Matsuya; Mayumi Nishiguchi; Hozumi Horita; Kazuhiko Nakao
Journal:  JMIR Form Res       Date:  2022-09-14

7.  The impact of air travel on the precocity and severity of COVID-19 deaths in sub-national areas across 45 countries.

Authors:  Ettore Recchi; Alessandro Ferrara; Alejandra Rodriguez Sanchez; Emanuel Deutschmann; Lorenzo Gabrielli; Stefano Iacus; Luca Bastiani; Spyridon Spyratos; Michele Vespe
Journal:  Sci Rep       Date:  2022-10-03       Impact factor: 4.996

8.  How do the smart travel ban policy and intercity travel pattern affect COVID-19 trends? Lessons learned from Iran.

Authors:  Habibollah Nassiri; Seyed Iman Mohammadpour; Mohammad Dahaghin
Journal:  PLoS One       Date:  2022-10-18       Impact factor: 3.752

  8 in total

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