Literature DB >> 34040283

Distanced LSTM: Time-Distanced Gates in Long Short-Term Memory Models for Lung Cancer Detection.

Riqiang Gao1, Yuankai Huo1, Shunxing Bao1, Yucheng Tang1, Sanja L Antic2, Emily S Epstein2, Aneri B Balar2, Steve Deppen2, Alexis B Paulson2, Kim L Sandler2, Pierre P Massion2, Bennett A Landman1.   

Abstract

The field of lung nodule detection and cancer prediction has been rapidly developing with the support of large public data archives. Previous studies have largely focused cross-sectional (single) CT data. Herein, we consider longitudinal data. The Long Short-Term Memory (LSTM) model addresses learning with regularly spaced time points (i.e., equal temporal intervals). However, clinical imaging follows patient needs with often heterogeneous, irregular acquisitions. To model both regular and irregular longitudinal samples, we generalize the LSTM model with the Distanced LSTM (DLSTM) for temporally varied acquisitions. The DLSTM includes a Temporal Emphasis Model (TEM) that enables learning across regularly and irregularly sampled intervals. Briefly, (1) the temporal intervals between longitudinal scans are modeled explicitly, (2) temporally adjustable forget and input gates are introduced for irregular temporal sampling; and (3) the latest longitudinal scan has an additional emphasis term. We evaluate the DLSTM framework in three datasets including simulated data, 1794 National Lung Screening Trial (NLST) scans, and 1420 clinically acquired data with heterogeneous and irregular temporal accession. The experiments on the first two datasets demonstrate that our method achieves competitive performance on both simulated and regularly sampled datasets (e.g. improve LSTM from 0.6785 to 0.7085 on F1 score in NLST). In external validation of clinically and irregularly acquired data, the benchmarks achieved 0.8350 (CNN feature) and 0.8380 (LSTM) on area under the ROC curve (AUC) score, while the proposed DLSTM achieves 0.8905.

Entities:  

Keywords:  LSTM; Longitudinal; Lung cancer; TEM; Time distance

Year:  2019        PMID: 34040283      PMCID: PMC8148226     

Source DB:  PubMed          Journal:  Mach Learn Med Imaging


  3 in total

1.  The National Lung Screening Trial: overview and study design.

Authors:  Denise R Aberle; Christine D Berg; William C Black; Timothy R Church; Richard M Fagerstrom; Barbara Galen; Ilana F Gareen; Constantine Gatsonis; Jonathan Goldin; John K Gohagan; Bruce Hillman; Carl Jaffe; Barnett S Kramer; David Lynch; Pamela M Marcus; Mitchell Schnall; Daniel C Sullivan; Dorothy Sullivan; Carl J Zylak
Journal:  Radiology       Date:  2010-11-02       Impact factor: 11.105

2.  Long short-term memory.

Authors:  S Hochreiter; J Schmidhuber
Journal:  Neural Comput       Date:  1997-11-15       Impact factor: 2.026

3.  Deep Learning Predicts Lung Cancer Treatment Response from Serial Medical Imaging.

Authors:  Yiwen Xu; Ahmed Hosny; Roman Zeleznik; Chintan Parmar; Thibaud Coroller; Idalid Franco; Raymond H Mak; Hugo J W L Aerts
Journal:  Clin Cancer Res       Date:  2019-04-22       Impact factor: 12.531

  3 in total
  5 in total

1.  Cancer Risk Estimation Combining Lung Screening CT with Clinical Data Elements.

Authors:  Riqiang Gao; Yucheng Tang; Mirza S Khan; Kaiwen Xu; Alexis B Paulson; Shelbi Sullivan; Yuankai Huo; Stephen Deppen; Pierre P Massion; Kim L Sandler; Bennett A Landman
Journal:  Radiol Artif Intell       Date:  2021-10-13

2.  Semi-supervised Machine Learning with MixMatch and Equivalence Classes.

Authors:  Colin B Hansen; Vishwesh Nath; Riqiang Gao; Camilo Bermudez; Yuankai Huo; Kim L Sandler; Pierre P Massion; Jeffrey D Blume; Thomas A Lasko; Bennett A Landman
Journal:  Lect Notes Monogr Ser       Date:  2020-10-02

3.  Disentangling Normal Aging From Severity of Disease via Weak Supervision on Longitudinal MRI.

Authors:  Jiahong Ouyang; Qingyu Zhao; Ehsan Adeli; Greg Zaharchuk; Kilian M Pohl
Journal:  IEEE Trans Med Imaging       Date:  2022-09-30       Impact factor: 11.037

4.  Longitudinal Pooling & Consistency Regularization to Model Disease Progression From MRIs.

Authors:  Jiahong Ouyang; Qingyu Zhao; Edith V Sullivan; Adolf Pfefferbaum; Susan F Tapert; Ehsan Adeli; Kilian M Pohl
Journal:  IEEE J Biomed Health Inform       Date:  2021-06-11       Impact factor: 7.021

Review 5.  Application of Artificial Intelligence in Lung Cancer.

Authors:  Hwa-Yen Chiu; Heng-Sheng Chao; Yuh-Min Chen
Journal:  Cancers (Basel)       Date:  2022-03-08       Impact factor: 6.639

  5 in total

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