Literature DB >> 34017160

X-CAL: Explicit Calibration for Survival Analysis.

Mark Goldstein1, Xintian Han1, Aahlad Puli1, Adler J Perotte2, Rajesh Ranganath1.   

Abstract

Survival analysis models the distribution of time until an event of interest, such as discharge from the hospital or admission to the ICU. When a model's predicted number of events within any time interval is similar to the observed number, it is called well-calibrated. A survival model's calibration can be measured using, for instance, distributional calibration (D-CALIBRATION) [Haider et al., 2020] which computes the squared difference between the observed and predicted number of events within different time intervals. Classically, calibration is addressed in post-training analysis. We develop explicit calibration (X-CAL), which turns D-CALIBRATION into a differentiable objective that can be used in survival modeling alongside maximum likelihood estimation and other objectives. X-CAL allows practitioners to directly optimize calibration and strike a desired balance between predictive power and calibration. In our experiments, we fit a variety of shallow and deep models on simulated data, a survival dataset based on MNIST, on length-of-stay prediction using MIMIC-III data, and on brain cancer data from The Cancer Genome Atlas. We show that the models we study can be miscalibrated. We give experimental evidence on these datasets that X-CAL improves D-CALIBRATION without a large decrease in concordance or likelihood.

Entities:  

Year:  2020        PMID: 34017160      PMCID: PMC8132615     

Source DB:  PubMed          Journal:  Adv Neural Inf Process Syst        ISSN: 1049-5258


  17 in total

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Journal:  Eur Heart J       Date:  2017-02-21       Impact factor: 29.983

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Journal:  Sci Data       Date:  2016-05-24       Impact factor: 6.444

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  3 in total

1.  Inverse-Weighted Survival Games.

Authors:  Xintian Han; Mark Goldstein; Aahlad Puli; Thomas Wies; Adler J Perotte; Rajesh Ranganath
Journal:  Adv Neural Inf Process Syst       Date:  2021-12

2.  A Generative Modeling Approach to Calibrated Predictions: A Use Case on Menstrual Cycle Length Prediction.

Authors:  Iñigo Urteaga; Kathy Li; Amanda Shea; Virginia J Vitzthum; Chris H Wiggins; Noémie Elhadad
Journal:  Proc Mach Learn Res       Date:  2021-08

3.  Penalized regression for left-truncated and right-censored survival data.

Authors:  Sarah F McGough; Devin Incerti; Svetlana Lyalina; Ryan Copping; Balasubramanian Narasimhan; Robert Tibshirani
Journal:  Stat Med       Date:  2021-07-24       Impact factor: 2.497

  3 in total

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