Literature DB >> 34016980

Structure determination of an amorphous drug through large-scale NMR predictions.

Manuel Cordova1,2, Martins Balodis1, Albert Hofstetter1, Federico Paruzzo1, Sten O Nilsson Lill3, Emma S E Eriksson3, Pierrick Berruyer1, Bruno Simões de Almeida1, Michael J Quayle4, Stefan T Norberg5, Anna Svensk Ankarberg5, Staffan Schantz6, Lyndon Emsley7,8.   

Abstract

Knowledge of the structure of amorphous solids can direct, for example, the optimization of pharmaceutical formulations, but atomic-level structure determination in amorphous molecular solids has so far not been possible. Solid-state nuclear magnetic resonance (NMR) is among the most popular methods to characterize amorphous materials, and molecular dynamics (MD) simulations can help describe the structure of disordered materials. However, directly relating MD to NMR experiments in molecular solids has been out of reach until now because of the large size of these simulations. Here, using a machine learning model of chemical shifts, we determine the atomic-level structure of the hydrated amorphous drug AZD5718 by combining dynamic nuclear polarization-enhanced solid-state NMR experiments with predicted chemical shifts for MD simulations of large systems. From these amorphous structures we then identify H-bonding motifs and relate them to local intermolecular complex formation energies.

Entities:  

Year:  2021        PMID: 34016980     DOI: 10.1038/s41467-021-23208-7

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  6 in total

1.  1H Detected Relayed Dynamic Nuclear Polarization.

Authors:  Pierrick Berruyer; Andrea Bertarello; Snædís Björgvinsdóttir; Moreno Lelli; Lyndon Emsley
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-04-27       Impact factor: 4.177

2.  Imaging active site chemistry and protonation states: NMR crystallography of the tryptophan synthase α-aminoacrylate intermediate.

Authors:  Jacob B Holmes; Viktoriia Liu; Bethany G Caulkins; Eduardo Hilario; Rittik K Ghosh; Victoria N Drago; Robert P Young; Jennifer A Romero; Adam D Gill; Paul M Bogie; Joana Paulino; Xiaoling Wang; Gwladys Riviere; Yuliana K Bosken; Jochem Struppe; Alia Hassan; Jevgeni Guidoulianov; Barbara Perrone; Frederic Mentink-Vigier; Chia-En A Chang; Joanna R Long; Richard J Hooley; Timothy C Mueser; Michael F Dunn; Leonard J Mueller
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-11       Impact factor: 11.205

3.  Bayesian probabilistic assignment of chemical shifts in organic solids.

Authors:  Manuel Cordova; Martins Balodis; Bruno Simões de Almeida; Michele Ceriotti; Lyndon Emsley
Journal:  Sci Adv       Date:  2021-11-26       Impact factor: 14.136

4.  De Novo Crystal Structure Determination from Machine Learned Chemical Shifts.

Authors:  Martins Balodis; Manuel Cordova; Albert Hofstetter; Graeme M Day; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2022-04-13       Impact factor: 16.383

5.  Combining X-ray and NMR Crystallography to Explore the Crystallographic Disorder in Salbutamol Oxalate.

Authors:  Aneesa J Al-Ani; Patrick M J Szell; Zainab Rehman; Helen Blade; Helen P Wheatcroft; Leslie P Hughes; Steven P Brown; Chick C Wilson
Journal:  Cryst Growth Des       Date:  2022-07-20       Impact factor: 4.010

6.  A Machine Learning Model of Chemical Shifts for Chemically and Structurally Diverse Molecular Solids.

Authors:  Manuel Cordova; Edgar A Engel; Artur Stefaniuk; Federico Paruzzo; Albert Hofstetter; Michele Ceriotti; Lyndon Emsley
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-09-23       Impact factor: 4.177

  6 in total

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