Literature DB >> 34016088

Replication of GWAS significant loci in a sub-Saharan African Cohort with early childhood caries: a pilot study.

Olubukola O Olatosi1, Mary Li2, Azeez A Alade2,3,4, Afolabi Oyapero5, Tamara Busch3, John Pape3, Joy Olotu6, Waheed Awotoye2,3, Mohaned Hassan3, Chinyere Adeleke3, Wasiu L Adeyemo7, Elizabeth O Sote8, John R Shaffer9,10, Mary Marazita9,10, Azeez Butali2,3.   

Abstract

BACKGROUND: Early childhood caries (ECC) is a rapidly progressing form of dental infection and a significant public health problem, especially among socially and economically disadvantaged populations. This study aimed to assess the risk factors for ECC among a cohort of Sub-Saharan African children and to determine the role of genetics in the etiology of ECC.
METHODS: A sample of 691 children (338 with ECC, 353 without ECC, age < 6 years) was recruited from schools in Lagos, Nigeria. Socio-demographic, dental services utilization and infant dietary data were obtained with interviewer-administered questionnaire. Oral examination was conducted using the WHO oral health diagnostic criteria. Saliva samples were collected from the children for genetic analysis. Single nucleotide polymorphisms were selected from previous study for genotyping. Genetic association analyses to investigate the role of genetics in the etiology of ECC was done. Bivariate comparisons and Multivariate logistic regression analyses were conducted to assess associations between ECC and predictor variables, p < 0.05.
RESULTS: Of the 338 children with ECC, 64 (18.9%) had Severe-Early Childhood Caries (S-ECC). Children aged 48-59 months comprised the highest proportion of subjects with ECC (165; 48.8%) and S-ECC (24; 37.5%) while female subjects had higher dt (3.13 ± 2.56) and dmft values 3.27 ± 2.64. ECC was significantly more prevalent among children who were breastfed at night ≥ 12 months (OR 3.30; CI 0.39, 4.75), those with no previous dental visit (OR 1.71; CI 0.24, 2.77), those who used sweetened pacifiers (OR 1.85; CI 0.91, 3.79) and those who daily consumed sugar-sweetened drinks/snacks (OR 1.35; CI 0.09, 18.51). A suggestive increased risk for ECC (OR 1.26, p = 0. 0.0397) was observed for the genetic variant rs11239282 on chromosome 10. We also observed a suggestive reduced risk for ECC (OR 0.80, p = 0.03) for the rs131777 on chromosome 22. None of the genetic variants were significant after correction for multiple testing (Bonferroni p value p = 0.004).
CONCLUSIONS: Prolonged night-time breastfeeding, poor utilization of dental services and daily consumption of sugar were risk factors for ECC. Larger sample size is needed to confirm the results of the genetic analysis and to conduct genome wide studies in order to discover new risk loci for ECC.

Entities:  

Keywords:  Early childhood caries (ECC); Genetics; Prevalence; Risk factors; Severe early childhood caries

Mesh:

Year:  2021        PMID: 34016088      PMCID: PMC8139096          DOI: 10.1186/s12903-021-01623-y

Source DB:  PubMed          Journal:  BMC Oral Health        ISSN: 1472-6831            Impact factor:   2.757


  36 in total

1.  Genome-wide association scan for childhood caries implicates novel genes.

Authors:  J R Shaffer; X Wang; E Feingold; M Lee; F Begum; D E Weeks; K T Cuenco; M M Barmada; S K Wendell; D R Crosslin; C C Laurie; K F Doheny; E W Pugh; Q Zhang; B Feenstra; F Geller; H A Boyd; H Zhang; M Melbye; J C Murray; R J Weyant; R Crout; D W McNeil; S M Levy; R L Slayton; M C Willing; B Broffitt; A R Vieira; M L Marazita
Journal:  J Dent Res       Date:  2011-09-21       Impact factor: 6.116

2.  GWAS of dental caries patterns in the permanent dentition.

Authors:  J R Shaffer; E Feingold; X Wang; M Lee; K Tcuenco; D E Weeks; R J Weyant; R Crout; D W McNeil; M L Marazita
Journal:  J Dent Res       Date:  2012-10-11       Impact factor: 6.116

3.  Host Genetic Control of the Oral Microbiome in Health and Disease.

Authors:  Andres Gomez; Josh L Espinoza; Derek M Harkins; Pamela Leong; Richard Saffery; Michelle Bockmann; Manolito Torralba; Claire Kuelbs; Rohith Kodukula; Jason Inman; Toby Hughes; Jeffrey M Craig; Sarah K Highlander; Marcus B Jones; Chris L Dupont; Karen E Nelson
Journal:  Cell Host Microbe       Date:  2017-09-13       Impact factor: 21.023

4.  New splicing mutation in the choline kinase beta (CHKB) gene causing a muscular dystrophy detected by whole-exome sequencing.

Authors:  Jorge Oliveira; Luís Negrão; Isabel Fineza; Ricardo Taipa; Manuel Melo-Pires; Ana Maria Fortuna; Ana Rita Gonçalves; Hugo Froufe; Conceição Egas; Rosário Santos; Mário Sousa
Journal:  J Hum Genet       Date:  2015-03-05       Impact factor: 3.172

5.  A congenital muscular dystrophy with mitochondrial structural abnormalities caused by defective de novo phosphatidylcholine biosynthesis.

Authors:  Satomi Mitsuhashi; Aya Ohkuma; Beril Talim; Minako Karahashi; Tomoko Koumura; Chieko Aoyama; Mana Kurihara; Ros Quinlivan; Caroline Sewry; Hiroaki Mitsuhashi; Kanako Goto; Burcu Koksal; Gulsev Kale; Kazutaka Ikeda; Ryo Taguchi; Satoru Noguchi; Yukiko K Hayashi; Ikuya Nonaka; Roger B Sher; Hiroyuki Sugimoto; Yasuhito Nakagawa; Gregory A Cox; Haluk Topaloglu; Ichizo Nishino
Journal:  Am J Hum Genet       Date:  2011-06-10       Impact factor: 11.025

Review 6.  Early childhood caries epidemiology, aetiology, risk assessment, societal burden, management, education, and policy: Global perspective.

Authors:  Norman Tinanoff; Ramon J Baez; Carolina Diaz Guillory; Kevin J Donly; Carlos Alberto Feldens; Colman McGrath; Prathip Phantumvanit; Nigel B Pitts; W Kim Seow; Nikolai Sharkov; Yupin Songpaisan; Svante Twetman
Journal:  Int J Paediatr Dent       Date:  2019-05       Impact factor: 3.455

Review 7.  Precision Dentistry in Early Childhood: The Central Role of Genomics.

Authors:  Kimon Divaris
Journal:  Dent Clin North Am       Date:  2017-05-08

8.  Early childhood caries and its associations with sugar consumption, overweight and exclusive breastfeeding in low, middle and high-income countries: an ecological study.

Authors:  Morenike O Folayan; Maha El Tantawi; Francisco Ramos-Gomez; Wael Sabbah
Journal:  PeerJ       Date:  2020-10-01       Impact factor: 2.984

9.  Genomic analyses in African populations identify novel risk loci for cleft palate.

Authors:  Azeez Butali; Peter A Mossey; Wasiu L Adeyemo; Mekonen A Eshete; Lord J J Gowans; Tamara D Busch; Deepti Jain; Wenjie Yu; Liu Huan; Cecelia A Laurie; Cathy C Laurie; Sarah Nelson; Mary Li; Pedro A Sanchez-Lara; William P Magee; Kathleen S Magee; Allyn Auslander; Frederick Brindopke; Denise M Kay; Michele Caggana; Paul A Romitti; James L Mills; Rosemary Audu; Chika Onwuamah; Ganiyu O Oseni; Arwa Owais; Olutayo James; Peter B Olaitan; Babatunde S Aregbesola; Ramat O Braimah; Fadekemi O Oginni; Ayodeji O Oladele; Saidu A Bello; Jennifer Rhodes; Rita Shiang; Peter Donkor; Solomon Obiri-Yeboah; Fareed Kow Nanse Arthur; Peter Twumasi; Pius Agbenorku; Gyikua Plange-Rhule; Alexander Acheampong Oti; Olugbenga M Ogunlewe; Afisu A Oladega; Adegbayi A Adekunle; Akinwunmi O Erinoso; Olatunbosun O Adamson; Abosede A Elufowoju; Oluwanifemi I Ayelomi; Taiye Hailu; Abiye Hailu; Yohannes Demissie; Miliard Derebew; Steve Eliason; Miguel Romero-Bustillous; Cynthia Lo; James Park; Shaan Desai; Muiawa Mohammed; Firke Abate; Lukman O Abdur-Rahman; Deepti Anand; Irfaan Saadi; Abimibola V Oladugba; Salil A Lachke; Brad A Amendt; Charles N Rotimi; Mary L Marazita; Robert A Cornell; Jeffrey C Murray; Adebowale A Adeyemo
Journal:  Hum Mol Genet       Date:  2019-03-15       Impact factor: 6.150

10.  Genome-wide association scan of dental caries in the permanent dentition.

Authors:  Xiaojing Wang; John R Shaffer; Zhen Zeng; Ferdouse Begum; Alexandre R Vieira; Jacqueline Noel; Ida Anjomshoaa; Karen T Cuenco; Myoung-Keun Lee; James Beck; Eric Boerwinkle; Marilyn C Cornelis; Frank B Hu; David R Crosslin; Cathy C Laurie; Sarah C Nelson; Kimberly F Doheny; Elizabeth W Pugh; Deborah E Polk; Robert J Weyant; Richard Crout; Daniel W McNeil; Daniel E Weeks; Eleanor Feingold; Mary L Marazita
Journal:  BMC Oral Health       Date:  2012-12-21       Impact factor: 2.757

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