| Literature DB >> 33997041 |
Bo Ren1, Jian Wang1, Zhoulin Miao1, Yuwei Xia2, Wenya Liu1, Tieliang Zhang1, Aierken Aikebaier1.
Abstract
BACKGROUND: To evaluate the role of radiomics based on magnetic resonance imaging (MRI) in the biological activity of hepatic alveolar echinococcosis (HAE).Entities:
Mesh:
Year: 2021 PMID: 33997041 PMCID: PMC8108638 DOI: 10.1155/2021/6681092
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1Illustration of the radiomics workflow adopted in this study. Note: SMOTE (synthetic minority oversampling technique); LASSO (least absolute shrinkage and selection operator); LR (logistic regression); MLP (multilayer perceptron); SVM (support vector machine).
Figure 2A representation of the manual segmentation in the T2-weighted images.
Demographic data of the HAE patients.
| Patient attributes | Active group | Inactive group |
|
|---|---|---|---|
| n | 90 | 46 | |
| Age (mean ± SD, yr) | 39 ± 13 | 38 ± 14 | 0.847 |
| Gender | 0.816 | ||
| Male | 43 | 21 | |
| Female | 47 | 25 | |
| Location of lesions | 0.264 | ||
| Less than 3 liver segments | 18 | 14 | |
| 3-6 liver segments | 67 | 28 | |
| More than 6 liver segments | 5 | 4 | |
| Lesion size (mm3) | 1388844.180 | 1357771.448 | 0.926 |
5-fold cross-validation for the best 5 group of best features.
| Experimental group | 0-fold | 1-fold | 2-fold | 3-fold | 4-fold |
|---|---|---|---|---|---|
| Feature name | wavelet-HLH_firstorder_Maximum | wavelet-HLL_glszm_SmallAreaEmphasis | wavelet-LHL_glcm_ClusterShade | squareroot_firstorder_InterquartileRange | wavelet-LHL_gldm_HighGrayLevelEmphasis |
| wavelet-LLL_glrlm_ShortRunLowGrayLevelEmphasis | wavelet-HLH_firstorder_Maximum | original_firstorder_Minimum | wavelet-HLH_firstorder_Maximum | wavelet-HLH_firstorder_Maximum | |
| wavelet-HLL_glszm_SmallAreaEmphasis | wavelet-LHL_gldm_HighGrayLevelEmphasis | wavelet-HLH_firstorder_Maximum | wavelet-LHL_glcm_ClusterShade | squareroot_firstorder_InterquartileRange | |
| wavelet-LHH_firstorder_Skewness | squareroot_firstorder_RobustMeanAbsoluteDeviation | wavelet-LLL_glrlm_ShortRunLowGrayLevelEmphasis | wavelet-HHH_glrlm_LowGrayLevelRunEmphasis | squareroot_firstorder_Range | |
| wavelet-LHL_gldm_HighGrayLevelEmphasis | wavelet-HHH_glrlm_LowGrayLevelRunEmphasis | wavelet-HHH_glrlm_LowGrayLevelRunEmphasis | wavelet-HLL_gldm_DependenceVariance | wavelet-HLL_glszm_SmallAreaEmphasis | |
| squareroot_firstorder_InterquartileRange | squareroot_firstorder_InterquartileRange | wavelet-LHL_gldm_LargeDependenceLowGrayLevelEmphasis | wavelet-HLL_glcm_SumEntropy | wavelet-LLL_glrlm_ShortRunLowGrayLevelEmphasis | |
| wavelet-HHL_glcm_ClusterShade | wavelet-LLL_firstorder_InterquartileRange | wavelet-LHL_glszm_SmallAreaEmphasis | wavelet-HLL_glszm_SmallAreaEmphasis | wavelet-HHH_glrlm_LowGrayLevelRunEmphasis | |
| wavelet-LLH_glszm_SizeZoneNonUniformity | wavelet-LLL_firstorder_Range | wavelet-LHH_firstorder_Skewness | wavelet-HLL_glszm_SmallAreaHighGrayLevelEmphasis | wavelet-HHL_glszm_GrayLevelVariance | |
| original_ngtdm_Busyness | wavelet-HLL_gldm_DependenceVariance | wavelet-HLL_glszm_SmallAreaEmphasis | wavelet-LHH_glszm_SizeZoneNonUniformityNormalized | ||
| original_firstorder_Minimum | wavelet-LHL_glszm_SmallAreaLowGrayLevelEmphasis | wavelet-HHH_glszm_SmallAreaLowGrayLevelEmphasis | wavelet-LHH_firstorder_Skewness |
Note: glcm (gray-level cooccurrence matrix); glrlm (gray-level run-length matrix); glszm (gray-level-size zone matrix); gldm (gray-level dependence matrix); ngtdm (neighbouring gray-tone difference matrix).
Figure 3Cumulative graph of optimal feature coefficients of 5-fold cross-validation.
Figure 4The ROC curves of the LR, MLP, and SVM machine learning classifiers in the training cohorts: (a) LR, (b) MLP, and (c) SVM.
Figure 5The ROC curves of the LR, MLP, and SVM machine learning classifiers in the test cohorts: (a) LR, (b) MLP, and (c) SVM.
Diagnostic performance of machine learning-based MRI radiomics classifiers to assess the bioactivity of HAE lesions in the training cohort.
| AUC | Accuracy | Sensitivity | Specificity | 95% CI, AUC | Cutoff | |
|---|---|---|---|---|---|---|
|
| ||||||
| 0-fold | 0.898 | 0.868 | 0.861 | 0.875 | 0.836-0.942 | 0.517 |
| 1-fold | 0.861 | 0.806 | 0.903 | 0.708 | 0.793-0.913 | 0.436 |
| 2-fold | 0.855 | 0.819 | 0.819 | 0.819 | 0.786-0.908 | 0.484 |
| 3-fold | 0.822 | 0.757 | 0.889 | 0.625 | 0.750-0.881 | 0.392 |
| 4-fold | 0.842 | 0.778 | 0.708 | 0.847 | 0.772-0.898 | 0.563 |
| Mean | 0.855 ± 0.025 | 0.806 | 0.836 | 0.775 | 0.750-0.942 | |
|
| ||||||
| 0-fold | 0.900 | 0.875 | 0.847 | 0.903 | 0.839-0.944 | 0.544 |
| 1-fold | 1.000 | 1.000 | 1.000 | 1.000 | 0.975-1.000 | 0.834 |
| 2-fold | 0.991 | 0.958 | 0.986 | 0.931 | 0.958-1.000 | 0.387 |
| 3-fold | 0.861 | 0.778 | 0.778 | 0.778 | 0.793-0.913 | 0.527 |
| 4-fold | 0.888 | 0.819 | 0.806 | 0.833 | 0.825-0.935 | 0.488 |
|
| 0.925 ± 0.057 |
|
|
|
| |
|
| ||||||
| 0-fold | 0.898 | 0.868 | 0.861 | 0.875 | 0.836-0.942 | 0.517 |
| 1-fold | 0.861 | 0.806 | 0.903 | 0.708 | 0.793-0.913 | 0.436 |
| 2-fold | 0.855 | 0.819 | 0.819 | 0.819 | 0.786-0.908 | 0.484 |
| 3-fold | 0.822 | 0.757 | 0.889 | 0.625 | 0.750-0.881 | 0.392 |
| 4-fold | 0.842 | 0.778 | 0.708 | 0.847 | 0.772-0.898 | 0.563 |
| Mean | 0.907 ± 0.037 | 0.806 | 0.836 | 0.775 | 0.750-0.942 |
Diagnostic performance of machine learning-based MRI radiomics classifiers to assesses bioactivity of HAE lesions in the test cohort.
| AUC | Accuracy | Sensitivity | Specificity | 95% CI, AUC | |
|---|---|---|---|---|---|
|
| 0.809 ± 0.046 | 0.794 | 0.778 |
| 0.565-0.959 |
|
| 0.830 ± 0.053 |
|
|
|
|
|
| 0.804 ± 0.035 | 0.794 | 0.778 |
| 0.565-0.959 |