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Literature DB >> 3399412

Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism.

Abstract

Expressions are derived for distributions of nucleosomes in chromatin. Nucleosomes are placed on DNA at the densities found in bulk chromatin, and their locations are allowed to vary at random. No further assumptions are required to simulate the periodic patterns of digestion obtained with various nucleases. The introduction of a boundary constraint, due for example to sequence-specific protein binding, results in an array of regularly spaced nucleosomes at nonrandom locations, similar to the arrays reported for some genes and other chromosomal regions.

Mesh：

Substances：
Chromatin
Nucleosomes
DNA

Year: 1988 PMID： 3399412 PMCID： PMC338322 DOI： 10.1093/nar/16.14.6677

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

46 in total

Review 1. Structure of chromatin.

Authors: R D Kornberg
Journal: Annu Rev Biochem Date: 1977 Impact factor: 23.643

2. Nucleosome arrangement on tRNA genes of Xenopus laevis.

Authors: P N Bryan; H Hofstetter; M L Birnstiel
Journal: Cell Date: 1981-12 Impact factor: 41.582

3. A phase relationship associates tRNA structural gene sequences with nucleosome cores.

Authors: B Wittig; S Wittig
Journal: Cell Date: 1979-12 Impact factor: 41.582

4. Chromatin structure of the histone genes of D. melanogaster.

Authors: B Samal; A Worcel; C Louis; P Schedl
Journal: Cell Date: 1981-02 Impact factor: 41.582

5. The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.

Authors: C Wu
Journal: Nature Date: 1980-08-28 Impact factor: 49.962

6. Non-random cleavage of SV40 DNA in the compact minichromosome and free in solution by micrococcal nuclease.

Authors: S A Nedospasov; G P Georgiev
Journal: Biochem Biophys Res Commun Date: 1980-01-29 Impact factor: 3.575

7. The location of nucleosomes in chromatin: specific or statistical.

Authors: R Kornberg
Journal: Nature Date: 1981-08-13 Impact factor: 49.962

8. Structural features of a phased nucleosome core particle.

Authors: R T Simpson; D W Stafford
Journal: Proc Natl Acad Sci U S A Date: 1983-01 Impact factor: 11.205

9. Multiple phases of nucleosomes in the hsp 70 genes of Drosophila melanogaster.

Authors: A Levy; M Noll
Journal: Nucleic Acids Res Date: 1980-12-20 Impact factor: 16.971

10. Yeast centromere DNA is in a unique and highly ordered structure in chromosomes and small circular minichromosomes.

Authors: K S Bloom; J Carbon
Journal: Cell Date: 1982-06 Impact factor: 41.582

143 in total

1. Collaborative competition mechanism for gene activation in vivo.

Authors: Joanna A Miller; Jonathan Widom
Journal: Mol Cell Biol Date: 2003-03 Impact factor: 4.272

Review 2. Nucleosome sliding: facts and fiction.

Authors: Peter B Becker
Journal: EMBO J Date: 2002-09-16 Impact factor: 11.598

3. Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner.

Authors: Yuri M Moshkin; Gillian E Chalkley; Tsung Wai Kan; B Ashok Reddy; Zeliha Ozgur; Wilfred F J van Ijcken; Dick H W Dekkers; Jeroen A Demmers; Andrew A Travers; C Peter Verrijzer
Journal: Mol Cell Biol Date: 2011-11-28 Impact factor: 4.272

9. Global chromatin structure of 45,000 base pairs of chromosome III in a- and alpha-cell yeast and during mating-type switching.

Authors: Sevinc Ercan; Robert T Simpson
Journal: Mol Cell Biol Date: 2004-11 Impact factor: 4.272

10. Nucleosomes are translationally positioned on the active allele and rotationally positioned on the inactive allele of the HPRT promoter.

Authors: C Chen; T P Yang
Journal: Mol Cell Biol Date: 2001-11 Impact factor: 4.272