Literature DB >> 33983581

Advances in Tumor Sampling and Sequencing in Breast Cancer and their Application in Precision Diagnostics and Therapeutics.

Amos Chungwon Lee1,2, Han-Byoel Lee3,4,5, Huiran Yeom6, Seo Woo Song2, Su Deok Kim6, Ahyoun Choi1, Sumin Lee6, Yongju Lee6, Wonshik Han7,8,9, Sunghoon Kwon10,11,12,13.   

Abstract

Intra- and Inter-tumoral heterogeneity is one of the main hurdles in diagnosing and treating breast cancer. Selecting, sampling, and sequencing the samples appropriately provide unique opportunities in realizing precision medicine. This chapter reviews some of the past landmarks, state-of-the-art technologies, and future directions of translational research in terms of tumor sampling technologies and sequencing in breast cancer. In the state-of-the-art technologies section, the technologies are categorized in terms of scientific, precision diagnostic, and precision therapeutic tools. Finally, limitations and future directions regarding various translational research for clinical applications using these technologies will be discussed.

Entities:  

Keywords:  Circulating tumor DNA; Circulating tumor cells; Drug screening; Laser-induced cell sorting; Liquid biopsy; Single-cell sequencing; Spatially resolved sequencing; Tumor heterogeneity

Mesh:

Substances:

Year:  2021        PMID: 33983581     DOI: 10.1007/978-981-32-9620-6_11

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  79 in total

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Authors: 
Journal:  Pol Arch Med Wewn       Date:  1974-06

Review 2.  Genome evolution in ductal carcinoma in situ: invasion of the clones.

Authors:  Anna K Casasent; Mary Edgerton; Nicholas E Navin
Journal:  J Pathol       Date:  2016-11-27       Impact factor: 7.996

3.  Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells.

Authors:  Kyu-Tae Kim; Hye Won Lee; Hae-Ock Lee; Sang Cheol Kim; Yun Jee Seo; Woosung Chung; Hye Hyeon Eum; Do-Hyun Nam; Junhyong Kim; Kyeung Min Joo; Woong-Yang Park
Journal:  Genome Biol       Date:  2015-06-19       Impact factor: 13.583

4.  Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.

Authors:  Peter Eirew; Adi Steif; Jaswinder Khattra; Gavin Ha; Damian Yap; Hossein Farahani; Karen Gelmon; Stephen Chia; Colin Mar; Adrian Wan; Emma Laks; Justina Biele; Karey Shumansky; Jamie Rosner; Andrew McPherson; Cydney Nielsen; Andrew J L Roth; Calvin Lefebvre; Ali Bashashati; Camila de Souza; Celia Siu; Radhouane Aniba; Jazmine Brimhall; Arusha Oloumi; Tomo Osako; Alejandra Bruna; Jose L Sandoval; Teresa Algara; Wendy Greenwood; Kaston Leung; Hongwei Cheng; Hui Xue; Yuzhuo Wang; Dong Lin; Andrew J Mungall; Richard Moore; Yongjun Zhao; Julie Lorette; Long Nguyen; David Huntsman; Connie J Eaves; Carl Hansen; Marco A Marra; Carlos Caldas; Sohrab P Shah; Samuel Aparicio
Journal:  Nature       Date:  2014-11-26       Impact factor: 49.962

5.  Tumour evolution inferred by single-cell sequencing.

Authors:  Nicholas Navin; Jude Kendall; Jennifer Troge; Peter Andrews; Linda Rodgers; Jeanne McIndoo; Kerry Cook; Asya Stepansky; Dan Levy; Diane Esposito; Lakshmi Muthuswamy; Alex Krasnitz; W Richard McCombie; James Hicks; Michael Wigler
Journal:  Nature       Date:  2011-03-13       Impact factor: 49.962

6.  Circulating tumour cells escape from EpCAM-based detection due to epithelial-to-mesenchymal transition.

Authors:  Tobias M Gorges; Ingeborg Tinhofer; Michael Drosch; Lars Röse; Thomas M Zollner; Thomas Krahn; Oliver von Ahsen
Journal:  BMC Cancer       Date:  2012-05-16       Impact factor: 4.430

7.  High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes.

Authors:  Mandeep Singh; Ghamdan Al-Eryani; Shaun Carswell; James M Ferguson; James Blackburn; Kirston Barton; Daniel Roden; Fabio Luciani; Tri Giang Phan; Simon Junankar; Katherine Jackson; Christopher C Goodnow; Martin A Smith; Alexander Swarbrick
Journal:  Nat Commun       Date:  2019-07-16       Impact factor: 14.919

8.  In situ single-cell analysis identifies heterogeneity for PIK3CA mutation and HER2 amplification in HER2-positive breast cancer.

Authors:  Michalina Janiszewska; Lin Liu; Vanessa Almendro; Yanan Kuang; Cloud Paweletz; Rita A Sakr; Britta Weigelt; Ariella B Hanker; Sarat Chandarlapaty; Tari A King; Jorge S Reis-Filho; Carlos L Arteaga; So Yeon Park; Franziska Michor; Kornelia Polyak
Journal:  Nat Genet       Date:  2015-08-24       Impact factor: 38.330

9.  Mutational landscape and significance across 12 major cancer types.

Authors:  Cyriac Kandoth; Michael D McLellan; Fabio Vandin; Kai Ye; Beifang Niu; Charles Lu; Mingchao Xie; Qunyuan Zhang; Joshua F McMichael; Matthew A Wyczalkowski; Mark D M Leiserson; Christopher A Miller; John S Welch; Matthew J Walter; Michael C Wendl; Timothy J Ley; Richard K Wilson; Benjamin J Raphael; Li Ding
Journal:  Nature       Date:  2013-10-17       Impact factor: 49.962

10.  PHLI-seq: constructing and visualizing cancer genomic maps in 3D by phenotype-based high-throughput laser-aided isolation and sequencing.

Authors:  Sungsik Kim; Amos Chungwon Lee; Han-Byoel Lee; Jinhyun Kim; Yushin Jung; Han Suk Ryu; Yongju Lee; Sangwook Bae; Minju Lee; Kyungmin Lee; Ryong Nam Kim; Woong-Yang Park; Wonshik Han; Sunghoon Kwon
Journal:  Genome Biol       Date:  2018-10-08       Impact factor: 13.583

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