| Literature DB >> 33980923 |
Jia Jiang1,2, Xiaoxiao Chen1,2, Can Li2, Yuehua Song3.
Abstract
Mitogenomes have been widely used to estimate phylogenetic relationships among insects and provide data useful for augmenting traditional morphological characters in delimiting species. Here, complete mitogenome sequences of two closely related typhlocybine leafhoppers, Cassianeura cassiae (Ahmed, 1970) and C. bimaculata Dworakowska, 1984, were obtained and found to be 15,423 bp and 14,597 bp in length, respectively. The gene order was found to be similar to other published leafhopper mitogenomes, but the control region of C. bimaculata is the shortest among known leafhoppers and lacks tandem repeats. Phylogenetic analysis of 13 protein-coding genes (PCGs), the first and second codons of 13 PCGs, 13 PCGs and two rRNAs formed three well-supported tree topologies. The topologies of phylogenetic trees inferred from three datasets were almost identical, which was consistent with previous molecular phylogenies of this group. Comparative morphological study of the ovipositors revealed several characters potentially useful for diagnosing genera and resolving their phylogenetic relationships. Phylogenetic analysis of these and other morphological characters yielded a tree that is mostly consistent with the tree obtained from analysis of mitogenome sequences. In both molecular and morphological phylogenenies, Typhlocybini and Zyginellini clustered into one clade, but neither was recovered as monophyletic.Entities:
Year: 2021 PMID: 33980923 PMCID: PMC8115509 DOI: 10.1038/s41598-021-89525-5
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Information on samples.
| subFamily | Species | Length(bp) | GenBank No | Sampling time | Collecting sites | Collector |
|---|---|---|---|---|---|---|
| Typhlocybinae | 15,423 | MT985380 | 26 I 2019 | Thailand | Can Li | |
| 14,597 | MT985381 | 26 I 2019 | Thailand | Can Li |
Sequence information of 17 species of Typhlocybinae and one outgroup downloaded from GenBank.
| tribe | Species | Length (bp) | GenBank no. | References |
|---|---|---|---|---|
| Erythroneurini | 15,472 | NC_047465.1 | [ | |
| 15,271 | MT350235.1 | [ | ||
| 14,827 | NC_048516.1 | [ | ||
| 14,803 | KY039129.1 | [ | ||
| Typhlocybini | 16,945 | MN910279.1 | [ | |
| 15,274 | MN661136.1 | [ | ||
| 15,233 | KY039138.1 | [ | ||
| Zyginellini | 15,716 | NC_046037.1 | [ | |
| 15,544 | MT488436.1 | [ | ||
| 16,497 | NC_047464.1 | [ | ||
| 15,382 | MN894531.1 | [ | ||
| Empoascini | 15,167 | NC_037210.1 | [ | |
| 15,154 | NC_024838.1 | [ | ||
| 15,152 | MK211224.1 | [ | ||
| 15,491 | MN699874.1 | [ | ||
Outgroup (Cercopidae) | 17,785 | NC_039157.1 | [ | |
| 15,637 | NC_025497.1 | [ |
Figure 1The organization of the mitogenomes of C. cassiae and C. bimaculata.
Nucleotide composition of the C. cassiae (C) and C. bimaculata (B) mitogenomes.
| Feature | A% | C% | G% | T% | A + T% | AT-skew | GC-skew | Length(bp) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C | B | C | B | C | B | C | B | C | B | C | B | C | B | C | B | |
| Whole | 42.8 | 39.9 | 10.4 | 11.8 | 8.5 | 10.6 | 38.3 | 38.7 | 81.1 | 78.6 | 0.055 | 0.015 | − 0.101 | − 0.054 | 15,423 | 14,597 |
| PCGs | 42.2 | 38.5 | 10.9 | 12.3 | 9.4 | 11.4 | 37.5 | 37.8 | 79.7 | 76.3 | 0.058 | 0.009 | − 0.074 | − 0.038 | 10,966 | 10,967 |
| 1st codon position | 44.5 | 40.5 | 9.6 | 13.3 | 8.7 | 13.5 | 37.1 | 32.8 | 81.6 | 73.3 | 0.091 | 0.105 | − 0.049 | 0.007 | 3656 | 3656 |
| 2nd codon position | 41.4 | 35.6 | 10.5 | 14.3 | 9.8 | 11.3 | 38.2 | 38.8 | 79.6 | 74.4 | 0.040 | − 0.043 | − 0.034 | -0.117 | 3655 | 3656 |
| 3rd codon position | 40.6 | 39.5 | 12.6 | 9.2 | 9.8 | 9.3 | 37.9 | 42.9 | 78.5 | 82.4 | 0.034 | − 0.041 | − 0.125 | 0.005 | 3655 | 3655 |
| tRNA | 41.0 | 40.0 | 11.4 | 11.0 | 9.6 | 10.5 | 38.1 | 38.5 | 79.1 | 78.5 | 0.037 | 0.019 | − 0.086 | − 0.023 | 1453 | 1433 |
| 47.9 | 47.7 | 10.0 | 10.4 | 6.2 | 6.1 | 36.0 | 35.8 | 83.9 | 83.5 | 0.142 | 0.143 | − 0.235 | − 0.261 | 1184 | 1168 | |
| 48.7 | 46.2 | 10.2 | 11.8 | 6.0 | 6.8 | 35.1 | 35.2 | 83.8 | 81.4 | 0.162 | 0.153 | − 0.259 | − 0.269 | 733 | 731 | |
| CR | 41.7 | 42.4 | 4.1 | 5.0 | 2.3 | 7.3 | 51.9 | 45.4 | 93.6 | 87.8 | − 0.109 | − 0.034 | − 0.281 | 0.187 | 1078 | 302 |
| N | 36.6 | 33.3 | 11.0 | 12.3 | 10.7 | 12.0 | 41.8 | 42.4 | 78.4 | 75.7 | − 0.066 | − 0.120 | − 0.02 | − 0.01 | 7680 | 7664 |
| J | 50.1 | 47.3 | 10.7 | 11.6 | 7.1 | 9.0 | 36.1 | 32.0 | 86.2 | 79.3 | 0.162 | 0.193 | − 0.202 | − 0.126 | 6656 | 6635 |
Figure 2Relative synonymous codon usage (RSCU) of mitogenomes for C. cassiae (top) and C. bimaculata (bottom).
Figure 3Structural organization of the Control region of C. cassiae and C. bimaculata. R: repeat unit.
Figure 4Phylogenetic tree from Typhlocybinae based on nucleotide sequence of 13 PCGs. Numbers above the nodes refer to the posterior probability (left) of Bayesian (BI) analyses and bootstrap proportion (right) of maximum likelihood (ML) analyses.
Figure 5Female sternite VII: (A) Mitjaevia protuberanta. (B) Empoascanara sipra. (C) Empoascanara dwalata. (D) Cassianeura cassiae. (E) Cassianeura bimaculata. (F) Eupteryx minuscula. (G) Eupteryx gracilivramus. (H) Limassolla lingchuanensis. (I) Zyginella minuta.
Figure 6Female valvula I: (A–I): (A) Mitjaevia protuberanta. (B) Empoascanara sipra. (C) Empoascanara dwalata. (D) Cassianeura cassiae. (E) Cassianeura bimaculata. (F) Eupteryx minuscula. (G) Eupteryx gracilivramus. (H) Limassolla lingchuanensis. (I) Zyginella minuta. (A–I): Enlarged end. (A–I): Local enlargement.
Figure 7Female valvula II: (A–I): (A) Mitjaevia protuberanta. (B) Empoascanara sipra. (C) Empoascanara dwalata. (D) Cassianeura cassiae. (E) Cassianeura bimaculata. (F) Eupteryx minuscula. (G) Eupteryx gracilivramus. (H) Limassolla lingchuanensis. (I) Zyginella minuta. (A–I): Enlarged end.
Figure 8Female valvula III: (A–I): (A) Mitjaevia protuberanta. (B) Empoascanara sipra. (C) Empoascanara dwalata. (D) Cassianeura cassiae. (E) Cassianeura bimaculata. (F) Eupteryx minuscula. (G) Eupteryx gracilivramus. (H) Limassolla lingchuanensis. (I) Zyginella minuta.
Figure 9Phylogenetic tree established by traditional search methods based on 63 morphological traits. (Outgroup: Dikraneura sp.).