| Literature DB >> 33973727 |
Changchun Lai1, Chunning Zhang2, Hualiang Lv3, Hanqing Huang4, Xia Ke1, Chuchan Zhou1, Hao Chen5, Shulin Chen5,6, Lei Zhou7.
Abstract
This study aims to develop and validate a novel prognostic model to estimate overall survival (OS) in nasopharyngeal carcinoma (NPC) patients based on clinical features and blood biomarkers. We assessed the model's incremental value to the TNM staging system, clinical treatment, and Epstein-Barr virus (EBV) DNA copy number for individual OS estimation. We retrospectively analyzed 519 consecutive patients with NPC. A prognostic model was generated using the Lasso regression model in the training cohort. Then we compared the predictive accuracy of the novel prognostic model with TNM staging, clinical treatment, and EBV DNA copy number using concordance index (C-index), time-dependent ROC (tdROC), and decision curve analysis (DCA). Subsequently, we built a nomogram for OS incorporating the prognostic model, TNM staging, and clinical treatment. Finally, we stratified patients into high-risk and low-risk groups according to the model risk score, and we analyzed the survival time of these two groups using Kaplan-Meier survival plots. All results were validated in the independent validation cohort. Using the Lasso regression, we established a prognostic model consisting of 13 variables with respect to patient prognosis. The C-index, tdROC, and DCA showed that the prognostic model had good predictive accuracy and discriminatory power in the training cohort than did TNM staging, clinical treatment, and EBV DNA copy number. Nomogram consisting of the prognostic model, TNM staging, clinical treatment, and EBV DNA copy number showed some superior net benefit. Based on the model risk score, we split the patients into two subgroups: low-risk (risk score ≤ -1.423) and high-risk (risk score > -1.423). There were significant differences in OS between the two subgroups of patients. Similar results were observed in the validation cohort. The proposed novel prognostic model based on clinical features and serological markers may represent a promising tool for estimating OS in NPC patients.Entities:
Keywords: lasso regression; model; nasopharyngeal carcinoma; nomogram; prognostic
Mesh:
Substances:
Year: 2021 PMID: 33973727 PMCID: PMC8178501 DOI: 10.1002/cam4.3839
Source DB: PubMed Journal: Cancer Med ISSN: 2045-7634 Impact factor: 4.452
Demographics and clinical characteristics of patients in the training and validation cohort
| Characteristic | Training cohort | Validation cohort | χ2 value |
|
|---|---|---|---|---|
| n = (346) | n = (173) | |||
| No. (%) | No. (%) | |||
| Gender | ||||
| Male | 264 (76.3%) | 121 (69.9%) | 2.435 | 0.119 |
| Female | 82 (23.7%) | 52 (30.1%) | ||
| Age (years) | ||||
| ≤60 | 310 (89.6%) | 150 (86.7%) | 0.956 | 0.328 |
| >60 | 36 (10.4%) | 23 (13.3%) | ||
| Family history | ||||
| Yes | 90 (26.0%) | 47 (27.2%) | 0.079 | 0.778 |
| No | 256 (74.0%) | 126 (72.8%) | ||
| Smoking index | ||||
| ≤20.0 | 226 (65.3%) | 103 (59.5%) | 1.661 | 0.198 |
| >20.0 | 120 (34.7%) | 70 (40.5%) | ||
| BMI (kg/m2) | ||||
| ≤26.33 | 298 (86.1%) | 155 (89.6%) | 1.250 | 0.264 |
| >26.33 | 48 (13.9%) | 18 (10.4%) | ||
| TNM stage | ||||
| I | 12 (3.5%) | 5 (2.9%) | 1.965 | 0.580 |
| II | 45 (13.0%) | 24 (13.9%) | ||
| III | 172 (49.7%) | 76 (43.9%) | ||
| IV | 117 (33.8%) | 68 (39.3%) | ||
| Treatment | ||||
| Rad | 58 (16.8%) | 32 (18.5%) | 0.242 | 0.623 |
| Rad and Che | 288 (83.2%) | 141 (81.5%) | ||
| WBC (109/L) | ||||
| ≤4.3 | 57 (16.5%) | 29 (16.8%) | 0.007 | 0.933 |
| >4.3 | 289 (83.5%) | 144 (83.2%) | ||
| Neutrophils (109/L) | ||||
| ≤7.0 | 306 (88.4%) | 148 (85.5%) | 0.879 | 0.348 |
| >7.0 | 40 (11.6%) | 25 (14.5%) | ||
| Lymphocyte (109/L) | ||||
| ≤1.41 | 145 (41.9%) | 75 (43.4%) | 0.099 | 0.753 |
| >1.41 | 201 (58.1%) | 98 (56.6%) | ||
| Monocyte (109/L) | ||||
| ≤0.4 | 175 (50.6%) | 82 (47.4%) | 0.466 | 0.495 |
| >0.4 | 171 (49.4%) | 91 (52.6%) | ||
| Platelet (109/L) | ||||
| ≤293.0 | 298 (86.1%) | 154 (89.0%) | 0.857 | 0.355 |
| >293.0 | 48 (13.9%) | 19 (11.0%) | ||
| HGB (g/L) | ||||
| ≤130.0 | 106 (30.6%) | 61 (35.3%) | 1.130 | 0.288 |
| >130.0 | 240 (69.4%) | 112 (64.7%) | ||
| NLR | ||||
| ≤3.91 | 263 (76.0%) | 126 (72.8%) | 0.621 | 0.431 |
| >3.91 | 83 (24.0%) | 47 (27.2%) | ||
| Dnlr | ||||
| ≤2.46 | 254 (73.4%) | 121 (69.9%) | 0.692 | 0.405 |
| >2.46 | 92 (26.6%) | 52 (30.1%) | ||
| LMR | ||||
| ≤3.4 | 141 (40.8%) | 76 (43.9%) | 0.479 | 0.489 |
| >3.4 | 205 (59.2%) | 97 (56.1%) | ||
| PLR | ||||
| ≤208.89 | 277 (80.1%) | 140 (80.9%) | 0.055 | 0.815 |
| >208.89 | 69 (19.9%) | 33 (19.1%) | ||
| SII | ||||
| ≤1141.96 | 294 (85.0%) | 144 (83.2%) | 0.263 | 0.608 |
| >1141.96 | 52 (15.0%) | 29 (16.8%) | ||
| TP (g/L) | ||||
| ≤77.2 | 273 (78.9%) | 128 (74.0%) | 1.585 | 0.208 |
| >77.2 | 73 (1.1%) | 45 (26.0%) | ||
| ALB (g/L) | ||||
| ≤42.4 | 132 (38.2%) | 63 (36.4%) | 0.148 | 0.701 |
| >42.4 | 214 (61.8%) | 110 (63.6%) | ||
| GLOB (g/L) | ||||
| ≤33.1 | 274 (79.2%) | 139 (80.3%) | 0.095 | 0.758 |
| >33.1 | 72 (20.8%) | 34 (19.7%) | ||
| AGR | ||||
| ≤1.36 | 108 (30.6%) | 45 (26.0%) | 1.406 | 0.236 |
| >1.36 | 240 (69.4%) | 128 (74.0%) | ||
| CRP (mg/L) | ||||
| ≤5.47 | 268 (77.5%) | 132 (76.3%) | 0.087 | 0.768 |
| >5.47 | 78 (22.5%) | 41 (23.7%) | ||
| CAR | ||||
| ≤0.16 | 282 (81.56%) | 139 (80.3%) | 0.101 | 0.751 |
| >0.16 | 64 (18.5%) | 34 (19.7%) | ||
| APOA (g/L) | ||||
| ≤1.28 | 167 (48.3%) | 81 (46.8%) | 0.097 | 0.756 |
| >1.28 | 179 (51.7%) | 92 (53.2%) | ||
| APOB (g/L) | ||||
| ≤1.03 | 218 (63.0%) | 105 (60.7%) | 0.262 | 0.609 |
| >1.03 | 128 (37.0%) | 68 (39.3%) | ||
| ABR | ||||
| ≤0.96 | 40 (11.6%) | 19 (11.0%) | 0.038 | 0.845 |
| >0.96 | 306 (88.4%) | 154 (89.0%) | ||
| LDH (U/L) | ||||
| ≤167.5 | 193 (55.8%) | 96 (55.5%) | 0.004 | 0.950 |
| >167.5 | 153 (44.2%) | 77 (44.5%) | ||
| HDL (U/L) | ||||
| ≤1.16 | 179 (51.7%) | 81 (46.8%) | 1.114 | 0.291 |
| >1.16 | 167 (48.3%) | 92 (53.2%) | ||
| Cys‐C (mg/L) | ||||
| ≤0.94 | 222 (64.2%) | 101 (58.4%) | 1.640 | 0.200 |
| >0.94 | 124 (35.8%) | 72 (41.6%) | ||
| EBV DNA, copy/mL | ||||
| <103 | 169 (48.8%) | 70 (40.5%) | 4.369 | 0.358 |
| 103–9,999 | 72 (20.8%) | 36 (20.8%) | ||
| 104–99,999 | 58 (16.8%) | 39 (22.5%) | ||
| 105–999,999 | 29 (8.4%) | 17 (9.8%) | ||
| ≥106 | 18 (5.2%) | 11 (6.4%) | ||
| VCA‐IgA | ||||
| <1:80 | 59 (17.1%) | 28 (16.2%) | 0.081 | 0.960 |
| 1:80–1:320 | 208 (60.1%) | 106 (61.3%) | ||
| ≥1:640 | 79 (22.8%) | 39 (22.5%) | ||
| EA‐IgA | ||||
| <1:10 | 116 (32.7%) | 49 (28.3%) | 1.338 | 0.512 |
| 1:10–1:20 | 110 (31.8%) | 60 (34.7%) | ||
| ≥1:40 | 123 (35.5%) | 64 (37.0%) | ||
| ALI | ||||
| ≤262.33 | 94 (27.2%) | 50 (28.9%) | 0.173 | 0.677 |
| >262.33 | 252 (72.8%) | 123 (71.1%) | ||
| PNI | ||||
| ≤47.35 | 63 (18.2%) | 33 (19.1%) | 0.058 | 0.810 |
| >47.35 | 283 (81.8%) | 140 (80.9%) | ||
| PI | ||||
| 0 | 275 (79.5%) | 141 (81.5%) | 0.644 | 0.725 |
| 1 | 64 (18.5%) | 30 (17.3%) | ||
| 2 | 7 (2.0%) | 2 (1.2%) | ||
Abbreviations: BMI, body mass index; TNM, Tumor Node Metastasis stage; Rad, radiotherapy; Che, chemotherapy; WBC, white blood cell; HGB, hemoglobin; NLR, neutrophil/lymphocyte ratio; dNLR, neutrophil/WBC‐neutrophil ratio; LMR, lymphocyte/monocyte ratio; PLR, platelet/lymphocyte ratio; SII, systemic immune‐inflammation index; TP, total protein; ALB, albumin; GLOB, globulin; AGR, ALB/GLOB ratio; CRP, C‐reactive protein; CAR, C‐reactive protein/albumin ratio; APOA, apolipoprotein AI; APOB, apolipoprotein B; ABR, APOA/APOB ratio; LDH, lactic dehydrogenase; HDL, high density lipoprotein; Cys‐C, cystatin C; EBV, Epstein‐Barr virus; VCA‐IgA, EBV immunoglobulin A/viral capsid antigen; EA‐IgA, EBV immunoglobulin A/early antigen; ALI, advanced lung cancer inflammation index; PNI, prognostic nutritional index; PI, prognostic index.
Smoking index: the number of cigarettes smoked each day × the year of cigarette smoking
TNM stage was classified according to the AJCC 8th TNM staging system
FIGURE 1Potential predictors' selection using LASSO regression model
The C‐index of the prognostic model, TNM staging, Treatment, and EBV DNA for prediction of OS in the training cohort and validation cohort
| Factors | C‐index (95% CI) |
|
|---|---|---|
| For training cohort | ||
| Prognostic model | 0.786 (0.728 ~ 0.844) | |
| TNM staging | 0.740 (0.690 ~ 0.790) | |
| Treatment | 0.554 (0.521 ~ 0.586) | |
| EBV DNA | 0.691 (0.623 ~ 0.758) | |
| Prognostic model versus TNM staging | 0.067 | |
| Prognostic model versus Treatment | <0.001 | |
| Prognostic model versus EBV DNA | 0.013 | |
| For validation cohort | ||
| Prognostic model | 0.697 (0.612 ~ 0.734) | |
| TNM staging | 0.655 (0.575 ~ 0.734) | |
| Treatment | 0.529 (0.470 ~ 0.588) | |
| EBV DNA | 0.734 (0.659 ~ 0.813) | |
| Prognostic model versus TNM staging | 0.310 | |
| Prognostic model versus Treatment | <0.001 | |
| Prognostic model versus EBV DNA | 0.511 | |
C‐index, concordance index; CI, confidence interval; P values are calculated based on normal approximation using function rcorrp.cens in Hmisc package.
FIGURE 2Comparison of predictive accuracy between prognostic model, TNM staging, and clinical treatment using time‐dependent ROC curves in training cohort and validation cohort
FIGURE 3Decision curve analysis for each model in training cohort and validation cohort
FIGURE 4The nomogram was used to estimate OS for NPC patients in the training cohor
FIGURE 5The calibration plot for the nomograms at 1‐, 3‐, 5‐ year in the training cohort
FIGURE 6The optimal cut‐off value of prognostic model risk score using R package "survival," and the distribution of the prognostic model risk score in the training cohort and validation cohort
OS and OS rate in high‐risk and low‐risk groups according to the model risk score in the training and validation cohort.
|
Parameter | Training cohort | Validation cohort | ||||
|---|---|---|---|---|---|---|
| High‐Risk Group | Low‐Risk Group | Total | High‐Risk Group | Low ‐Risk Group | Total | |
| No. of patients | 87 | 259 | 346 | 49 | 124 | 173 |
|
Median (IQR) |
44.4 (24.7–66.1) |
61.2 (44.6–67.8) |
51.4 (42.1–67.0) |
45.8 (26.1–64.1) |
53.5 (43.0–66.3) |
50.4 (41.9–66.0) |
| No. of OS | ||||||
| 1‐Year | 83 (95.4%) | 254 (98.1%) | 337 (97.4%) | 44 (89.8%) | 119 (96.0%) | 163 (94.2%) |
| 3‐Year | 55 (63.2%) | 235 (90.7%) | 290 (83.8%) | 36 (73.5%) | 110 (88.7%) | 146 (84.4%) |
| 5‐Year | 29 (33.3%) | 138 (53.3%) | 167 (48.3%) | 17 (34.7%) | 57 (46.0%) | 74 (42.8%) |
Abbreviations: OS, overall survival; IQR, interquartile range.
FIGURE 7Kaplan–Meier analyses of OS according to the prognostic model risk score classifier in subgroups of NPC patients in the training cohort and the validation cohort