Literature DB >> 33972636

Texture analysis of muscle MRI: machine learning-based classifications in idiopathic inflammatory myopathies.

Keita Nagawa1, Masashi Suzuki2, Yuuya Yamamoto2, Kaiji Inoue2, Eito Kozawa2, Toshihide Mimura3, Koichiro Nakamura4, Makoto Nagata5, Mamoru Niitsu2.   

Abstract

To develop a machine learning (ML) model that predicts disease groups or autoantibodies in patients with idiopathic inflammatory myopathies (IIMs) using muscle MRI radiomics features. Twenty-two patients with dermatomyositis (DM), 14 with amyopathic dermatomyositis (ADM), 19 with polymyositis (PM) and 19 with non-IIM were enrolled. Using 2D manual segmentation, 93 original features as well as 93 local binary pattern (LBP) features were extracted from MRI (short-tau inversion recovery [STIR] imaging) of proximal limb muscles. To construct and compare ML models that predict disease groups using each set of features, dimensional reductions were performed using a reproducibility analysis by inter-reader and intra-reader correlation coefficients, collinearity analysis, and the sequential feature selection (SFS) algorithm. Models were created using the linear discriminant analysis (LDA), quadratic discriminant analysis (QDA), support vector machine (SVM), k-nearest neighbors (k-NN), random forest (RF) and multi-layer perceptron (MLP) classifiers, and validated using tenfold cross-validation repeated 100 times. We also investigated whether it was possible to construct models predicting autoantibody status. Our ML-based MRI radiomics models showed the potential to distinguish between PM, DM, and ADM. Models using LBP features provided better results, with macro-average AUC values of 0.767 and 0.714, accuracy of 61.2 and 61.4%, and macro-average recall of 61.9 and 59.8%, in the LDA and k-NN classifiers, respectively. In contrast, the accuracies of radiomics models distinguishing between non-IIM and IIM disease groups were low. A subgroup analysis showed that classification models for anti-Jo-1 and anti-ARS antibodies provided AUC values of 0.646-0.853 and 0.692-0.792, with accuracy of 71.5-81.0 and 65.8-78.3%, respectively. ML-based TA of muscle MRI may be used to predict disease groups or the autoantibody status in patients with IIM and is useful in non-invasive assessments of disease mechanisms.

Entities:  

Year:  2021        PMID: 33972636     DOI: 10.1038/s41598-021-89311-3

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  37 in total

Review 1.  Polymyositis and dermatomyositis (first of two parts).

Authors:  A Bohan; J B Peter
Journal:  N Engl J Med       Date:  1975-02-13       Impact factor: 91.245

Review 2.  Polymyositis and dermatomyositis (second of two parts).

Authors:  A Bohan; J B Peter
Journal:  N Engl J Med       Date:  1975-02-20       Impact factor: 91.245

3.  Magnetic resonance imaging criteria for distinguishing between inclusion body myositis and polymyositis.

Authors:  Elisabeth Dion; Patrick Cherin; Christine Payan; Jean-Charles Fournet; Thomas Papo; Thierry Maisonobe; Eric Auberton; Olivier Chosidow; Pierre Godeau; Jean-Charles Piette; Serge Herson; Philippe Grenier
Journal:  J Rheumatol       Date:  2002-09       Impact factor: 4.666

Review 4.  Polymyositis, dermatomyositis and inclusion-body myositis.

Authors:  M C Dalakas
Journal:  N Engl J Med       Date:  1991-11-21       Impact factor: 91.245

Review 5.  Autoantibodies in myositis.

Authors:  Neil J McHugh; Sarah L Tansley
Journal:  Nat Rev Rheumatol       Date:  2018-04-20       Impact factor: 20.543

Review 6.  Current diagnosis and treatment of polymyositis and dermatomyositis.

Authors:  Hirokazu Sasaki; Hitoshi Kohsaka
Journal:  Mod Rheumatol       Date:  2018-05-09       Impact factor: 3.023

Review 7.  Polymyositis and dermatomyositis.

Authors:  Marinos C Dalakas; Reinhard Hohlfeld
Journal:  Lancet       Date:  2003-09-20       Impact factor: 79.321

8.  Splicing variant of WDFY4 augments MDA5 signalling and the risk of clinically amyopathic dermatomyositis.

Authors:  Yuta Kochi; Yoichiro Kamatani; Yuya Kondo; Akari Suzuki; Eiryo Kawakami; Ryosuke Hiwa; Yukihide Momozawa; Manabu Fujimoto; Masatoshi Jinnin; Yoshiya Tanaka; Takashi Kanda; Robert G Cooper; Hector Chinoy; Simon Rothwell; Janine A Lamb; Jiří Vencovský; Heřman Mann; Koichiro Ohmura; Keiko Myouzen; Kazuyoshi Ishigaki; Ran Nakashima; Yuji Hosono; Hiroto Tsuboi; Hidenaga Kawasumi; Yukiko Iwasaki; Hiroshi Kajiyama; Tetsuya Horita; Mariko Ogawa-Momohara; Akito Takamura; Shinichiro Tsunoda; Jun Shimizu; Keishi Fujio; Hirofumi Amano; Akio Mimori; Atsushi Kawakami; Hisanori Umehara; Tsutomu Takeuchi; Hajime Sano; Yoshinao Muro; Tatsuya Atsumi; Toshihide Mimura; Yasushi Kawaguchi; Tsuneyo Mimori; Atsushi Takahashi; Michiaki Kubo; Hitoshi Kohsaka; Takayuki Sumida; Kazuhiko Yamamoto
Journal:  Ann Rheum Dis       Date:  2018-01-13       Impact factor: 19.103

Review 9.  The Clinical Features of Myositis-Associated Autoantibodies: a Review.

Authors:  Harsha Gunawardena
Journal:  Clin Rev Allergy Immunol       Date:  2017-02       Impact factor: 8.667

10.  Frequency, mutual exclusivity and clinical associations of myositis autoantibodies in a combined European cohort of idiopathic inflammatory myopathy patients.

Authors:  Z Betteridge; S Tansley; G Shaddick; H Chinoy; R G Cooper; R P New; J B Lilleker; J Vencovsky; L Chazarain; K Danko; M Nagy-Vincze; L Bodoki; M Dastmalchi; L Ekholm; I E Lundberg; N McHugh
Journal:  J Autoimmun       Date:  2019-04-13       Impact factor: 7.094

View more
  3 in total

1.  Diagnostic utility of a conventional MRI-based analysis and texture analysis for discriminating between ovarian thecoma-fibroma groups and ovarian granulosa cell tumors.

Authors:  Keita Nagawa; Tomoki Kishigami; Fumitaka Yokoyama; Sho Murakami; Toshiharu Yasugi; Yasunobu Takaki; Kaiji Inoue; Saki Tsuchihashi; Satoshi Seki; Yoshitaka Okada; Yasutaka Baba; Kosei Hasegawa; Masanori Yasuda; Eito Kozawa
Journal:  J Ovarian Res       Date:  2022-05-25       Impact factor: 5.506

2.  Comparison of the Classification Results Accuracy for CT Soft Tissue and Bone Reconstructions in Detecting the Porosity of a Spongy Tissue.

Authors:  Róża Dzierżak; Zbigniew Omiotek; Ewaryst Tkacz; Sebastian Uhlig
Journal:  J Clin Med       Date:  2022-08-03       Impact factor: 4.964

3.  Machine-learning-based contrast-enhanced computed tomography radiomic analysis for categorization of ovarian tumors.

Authors:  Jiaojiao Li; Tianzhu Zhang; Juanwei Ma; Ningnannan Zhang; Zhang Zhang; Zhaoxiang Ye
Journal:  Front Oncol       Date:  2022-08-09       Impact factor: 5.738

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.