Literature DB >> 33972454

Endemic SARS-CoV-2 Polymorphisms Can Cause a Higher Diagnostic Target Failure Rate than Estimated by Aggregate Global Sequencing Data.

Daniel D Rhoads1, David Plunkett1, Joy Nakitandwe1, Andrew Dempsey1, Zheng Jin Tu1, Gary W Procop1, David Bosler1, Brian P Rubin1, Michael J Loeffelholz2, Jay E Brock1.   

Abstract

Entities:  

Keywords:  PCR; SARS-CoV-2; mutation; nucleocapsid gene; variant

Mesh：

Substances：

Year:  2021        PMID： 33972454      PMCID： PMC8288267          DOI： 10.1128/JCM.00913-21

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


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  6 in total

1.  S-Gene Target Failure as a Marker of Variant B.1.1.7 Among SARS-CoV-2 Isolates in the Greater Toronto Area, December 2020 to March 2021.

Authors:  Kevin A Brown; Jonathan Gubbay; Jessica Hopkins; Samir Patel; Sarah A Buchan; Nick Daneman; Lee William Goneau
Journal:  JAMA       Date:  2021-05-25       Impact factor: 56.272

2.  College of American Pathologists (CAP) Microbiology Committee Perspective: Caution Must Be Used in Interpreting the Cycle Threshold (Ct) Value.

Authors:  Daniel Rhoads; David R Peaper; Rosemary C She; Frederick S Nolte; Christina M Wojewoda; Neil W Anderson; Bobbi S Pritt
Journal:  Clin Infect Dis       Date:  2021-05-18       Impact factor: 9.079

3.  Two-step strategy for the identification of SARS-CoV-2 variant of concern 202012/01 and other variants with spike deletion H69-V70, France, August to December 2020.

Authors:  Antonin Bal; Gregory Destras; Alexandre Gaymard; Karl Stefic; Julien Marlet; Sébastien Eymieux; Hadrien Regue; Quentin Semanas; Constance d'Aubarede; Geneviève Billaud; Frédéric Laurent; Claudia Gonzalez; Yahia Mekki; Martine Valette; Maude Bouscambert; Catherine Gaudy-Graffin; Bruno Lina; Florence Morfin; Laurence Josset
Journal:  Euro Surveill       Date:  2021-01

4.  A Novel Point Mutation in the N Gene of SARS-CoV-2 May Affect the Detection of the Virus by Reverse Transcription-Quantitative PCR.

Authors:  Mohammad Rubayet Hasan; Sathyavathi Sundararaju; Chidambaram Manickam; Faheem Mirza; Hamad Al-Hail; Stephan Lorenz; Patrick Tang
Journal:  J Clin Microbiol       Date:  2021-03-19       Impact factor: 5.948

5.  A Recurrent Mutation at Position 26340 of SARS-CoV-2 Is Associated with Failure of the E Gene Quantitative Reverse Transcription-PCR Utilized in a Commercial Dual-Target Diagnostic Assay.

Authors:  Maria Artesi; Sébastien Bontems; Marie-Pierre Hayette; Vincent Bours; Keith Durkin; Paul Göbbels; Marc Franckh; Piet Maes; Raphaël Boreux; Cécile Meex; Pierrette Melin
Journal:  J Clin Microbiol       Date:  2020-09-22       Impact factor: 5.948

6.  SARS-CoV-2 samples may escape detection because of a single point mutation in the N gene.

Authors:  Katharina Ziegler; Philipp Steininger; Renate Ziegler; Jörg Steinmann; Klaus Korn; Armin Ensser
Journal:  Euro Surveill       Date:  2020-10
  6 in total
  8 in total

1.  Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1.

Authors:  Kyle G Rodino; David R Peaper; Brendan J Kelly; Frederic Bushman; Andrew Marques; Hriju Adhikari; Zheng Jin Tu; Rebecca Marrero Rolon; Lars F Westblade; Daniel A Green; Gregory J Berry; Fann Wu; Medini K Annavajhala; Anne-Catrin Uhlemann; Bijal A Parikh; Tracy McMillen; Krupa Jani; N Esther Babady; Anne M Hahn; Robert T Koch; Nathan D Grubaugh; Daniel D Rhoads
Journal:  J Clin Microbiol       Date:  2022-05-18       Impact factor: 11.677

2.  Assessment of BIV1-CovIran inactivated vaccine-elicited neutralizing antibody against the emerging SARS-CoV-2 variants of concern.

Authors:  Mohammadreza Salehi; Hamed Hosseini; Hamid Reza Jamshidi; Hasan Jalili; Payam Tabarsi; Minoo Mohraz; Hesam Karimi; Majid Lotfinia; Reza Aalizadeh; Mehrdad Mohammadi; Shahin Ramazi; Asghar Abdoli
Journal:  Clin Microbiol Infect       Date:  2022-03-03       Impact factor: 13.310

3.  Single-Point Mutations in the N Gene of SARS-CoV-2 Adversely Impact Detection by a Commercial Dual Target Diagnostic Assay.

Authors:  Sharon Miller; Terence Lee; Adam Merritt; Todd Pryce; Avram Levy; David Speers
Journal:  Microbiol Spectr       Date:  2021-11-17

4.  Precision Response to the Rise of the SARS-CoV-2 B.1.1.7 Variant of Concern by Combining Novel PCR Assays and Genome Sequencing for Rapid Variant Detection and Surveillance.

Authors:  Nathan Zelyas; Kanti Pabbaraju; Matthew A Croxen; Tarah Lynch; Emily Buss; Stephanie A Murphy; Sandy Shokoples; Anita Wong; Jamil N Kanji; Graham Tipples
Journal:  Microbiol Spectr       Date:  2021-08-11

5.  Update of Guidelines for Laboratory Diagnosis of COVID-19 in Korea.

Authors:  Ki Ho Hong; Gab Jung Kim; Kyoung Ho Roh; Heungsup Sung; Jaehyeon Lee; So Yeon Kim; Taek Soo Kim; Jae-Sun Park; Hee Jae Huh; Younhee Park; Jae-Seok Kim; Hyun Soo Kim; Moon-Woo Seong; Nam Hee Ryoo; Sang Hoon Song; Hyukmin Lee; Gye Cheol Kwon; Cheon Kwon Yoo
Journal:  Ann Lab Med       Date:  2022-07-01       Impact factor: 4.941

6.  Infection clusters can elevate risk of diagnostic target failure for detection of SARS-CoV-2.

Authors:  Denise Lopez; Jill Roberts; Marie Bourgeois; Joshua Kootstra; Sharon Minnick; Allison Black; Joshua Mauss; Nick Flores
Journal:  PLoS One       Date:  2022-02-16       Impact factor: 3.240

7.  Collaboration between Clinical and Academic Laboratories for Sequencing SARS-CoV-2 Genomes.

Authors:  Jeremy Wang; Shawn E Hawken; Corbin D Jones; Robert S Hagan; Frederic Bushman; John Everett; Melissa B Miller; Kyle G Rodino
Journal:  J Clin Microbiol       Date:  2022-01-05       Impact factor: 11.677

8.  Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada.

Authors:  Marc R Isabel; Sandra Isabel; Mariana Abdulnoor; Karel Boissinot; Richard de Borja; Philip C Zuzarte; Calvin P Sjaarda; Kevin R Barker; Prameet M Sheth; Larissa M Matukas; Jonathan B Gubbay; Allison J McGeer; Samira Mubareka; Jared T Simpson; Ramzi Fattouh
Journal:  Sci Rep       Date:  2022-06-27       Impact factor: 4.996
  8 in total

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