| Literature DB >> 33967607 |
Zheng Yingying1, Yu Yongji2, Cheng Qiuting1, Liao Rifang3, Zeng Zhuanping1.
Abstract
We explored has_circ_0071106 as a diagnostic marker for type 2 diabetes (T2DM) in south China, and predicted the functional mechanism of the target circRNA. A total of 107 T2DM patients and 107 healthy reference persons were included as the research objects. In the first stage, the circRNA microarray was used to detect the peripheral blood of 4 T2DM and 4 control groups to screen the differential expression profile of circRNA. In the second stage, four circRNAs were screened from the differential expression profiles of circRNA, and real-time polymerase chain reaction (Q-PCR) technology was used to verify the blood samples of 103 T2DM and 103 controls. Finally, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis in bioinformatics were used to predict the functional mechanism of target circRNA. Lastly,we found that has_circ_0071106 increase the risk of T2DM (OR=2.819 (95% CI: 1.415~5.616)). Thearea under the ROCcurve has_circ_0071106 was 0.690, the sensitivity was 62.1%, and the specificity was 69.9%. The function prediction results showed that has_circ_0071106 was involved in biological processes such as protein binding, gene transcription, and may be involved in the pathway of hsa-miR-29a-5p regulating diabetes, has_circ_0071106 may be used as a diagnostic marker for T2DM. © The author(s).Entities:
Keywords: circRNA microarray; diagnostic marker; type 2 diabetes
Year: 2021 PMID: 33967607 PMCID: PMC8100644 DOI: 10.7150/ijms.52575
Source DB: PubMed Journal: Int J Med Sci ISSN: 1449-1907 Impact factor: 3.738
Primer sequences of target circRNA and GAPDH
| Primers | Amplified sequence |
|---|---|
| hsa_circ_0071271-F | 5'-GGAACCCAAAGACCTGCTACAA-3' |
| hsa_circ_0071271-R | 5'-TGGTCCACTCCAGCTCCTCT-3' |
| hsa_circ_0003344-F | 5'-GGAAGAGCTACGGGAGATCAA-3' |
| hsa_circ_0003344-R | 5'-CCAGGTCTCCCTTATCGACCT-3' |
| hsa_circ_0000284-F | 5'-ATAGACTTTGGGTCGGCCAGT-3' |
| hsa_circ_0000284-R | 5'-TCTTCACACTACAAAAGGCACTTGA-3' |
| hsa_circ_0071106-F | 5'-GAAGCTGCTGATCGGAAGAAA-3' |
| hsa_circ_0071106-R | 5'-GCCGGTTCTGCTCTACTTGG-3' |
| GAPDH-F | 5'-GCACCGTCAAGGCTGAGAAC-3' |
| GAPDH-R | 5'-TGGTGAAGACGCCAGTGGA-3' |
Figure 1RNA agarose gel electrophoresis (the left picture is the diabetes group, the right picture is the control group).
Figure 2circRNA scatter plot (diabetes group and control group).
Figure 3circRNA volcano graph (diabetes group and control group).
Demographic characteristics of the research object
| Variable | Control (n=103) | T2DM (n=103) | χ2 | |
|---|---|---|---|---|
| 0.047 | 0.977 | |||
| 18~ | 31 (30.10) | 30 (29.13) | ||
| 45~ | 56 (54.37) | 56 (54.37) | ||
| 60~ | 16 (15.53) | 17 (16.50) | ||
| 14.842 | 0.002 | |||
| Unemployment | 34 (33.01) | 60 (58.25) | ||
| Business people | 7 (6.8) | 3 (2.91) | ||
| Farmer | 11 (10.68) | 11 (10.68) | ||
| Industrialist | 51 (49.51) | 29 (28.16) | ||
| 0.951 | 0.330 | |||
| No | 75 (72.82) | 81 (78.64) | ||
| Yes | 28 (27.18) | 22 (21.36) | ||
| 0.126 | 0.723 | |||
| No | 86 (83.5) | 87 (85.29) | ||
| Yes | 17 (16.5) | 15 (14.71) | ||
| 9.690 | 0.002 | |||
| No | 91 (55.49) | 12 (28.57) | ||
| Yes | 73 (44.51) | 30 (71.43) | ||
| 1.215 | 0.270 | |||
| No | 79 (52.32) | 24 (43.64) | ||
| Yes | 72 (47.68) | 31 (56.36) |
Comparison of the expression levels of biochemical indexes between the diabetes group and the control group
| Variable | Control | T2DM | ||
|---|---|---|---|---|
| SBP (mmHg) | 134 (123,151) | 138 (125,157) | 274.0 | 0.370 |
| DBP (mmHg) | 82 (74,94) | 85 (75,94) | 201.0 | 0.486 |
| ALT (IU/L) | 20 (15,38) | 24 (17,39) | 23.5 | 0.936 |
| AST (IU/L) | 20.6 (17,31) | 19 (15.2,23) | -931.5 | 0.002 |
| Glu | 5.6 (5.2,6.2) | 15.8 (10.8,22.5) | 2516.5 | <0.001 |
| HbA1c | 5.4 (5.1,5.7) | 10.4 (9.0,11.9) | 2678.0 | <0.001 |
| LDL (mmol/L) | 2.89 (2.53,3.29) | 3.22 (2.74,3.86) | 862.5 | 0.004 |
| HDL (mmol/L) | 1.36 (1.19,1.50) | 1.37 (1.21,1.56) | 388.0 | 0.197 |
| TG (mmol/L) | 1.45 (0.98,3.64) | 2.82 (2.10,4.65) | 1795.0 | <0.001 |
| TC (mmol/L) | 4.60 (4.04,5.20) | 5.39 (4.80,6.10) | 1278.0 | <0.001 |
| K | 3.89 (3.68,4.14) | 3.97 (3.69,4.16) | 233.5 | 0.438 |
| Ca | 2.33 (2.24,2.41) | 2.35 (2.24,2.40) | -10.0 | 0.972 |
| Na | 138.90(135.20,141.00) | 134.10(128.20,137.60) | -1050.5 | <0.001 |
| Cl | 103.50 (101.5,106.0) | 99.5 (98.0,101.9) | -2060.0 | <0.001 |
Verification of relative expression of target circRNA in diabetes and control group by qPCR
| Target circRNA | Control | T2DM | ||
|---|---|---|---|---|
| hsa_circ_0071106 | 5.58±0.75 | 5.34±0.71 | 2.65 | 0.009 |
| hsa_circ_0000284 | 2.35±0.75 | 2.29±0.65 | 0.66 | 0.508 |
| hsa_circ_0003344 | 4.25±1.29 | 4.30±1.17 | 0.32 | 0.751 |
| hsa_circ_0071271 | 8.50±1.39 | 8.43±1.32 | 0.56 | 0.577 |
Figure 4ROC curve of hsa_circ_0071106 in diabetes. Note: The picture on the top is the ROC curve before adjustment, and the picture on the bottom is the ROC curve after adjusting the influencing factors such as occupation, blood lipid (AUC<0.5 has no diagnostic value, AUC>0.5 is diagnostic value).
Diagnostic value of differentially expressed circRNA in diabetes
| circRNA | AUC | sensitivity | specificity | Cut off | Youden |
|---|---|---|---|---|---|
| hsa_circ_0071106 (After) | 0.587 | 0.825 | 0.359 | 5.914 | 0.184 |
| hsa_circ_0071106 (Later) | 0.690 | 0.621 | 0.699 | 6.243 | 0.320 |
Multivariate logistic regression of hsa_circ_0071106 and diabetes
| Variable | S | OR (95% CI) | After OR (95% CI) | |||
|---|---|---|---|---|---|---|
| No | 1.000 | - | - | - | - | - |
| Yes | -1.030 | 0.307 | 11.268 | <0.001 | 0.350 (0.190~0.643) | 0.357 (0.196~0.651) |
| No | 1.000 | - | - | - | - | - |
| Yes | 0.948 | 0.396 | 5.741 | 0.017 | 2.800 (1.360~5.764) | 2.581 (1.188~5.604) |
| Low | 1.000 | - | - | - | - | - |
| High | 1.036 | 0.352 | 8.687 | 0.003 | 2.478 (1.306~4.701) | 2.819 (1.415~5.616) |
Figure 5The top 10 significant GO entries of hsa_circ_0071106.
KEGG pathway enrichment analysis of hsa_circ_0071106
| KEGG signaling pathway | Number of genes (%) | |
|---|---|---|
| MAPK signaling pathway | 12 (2.4) | 0.039 |
| Melanoma | 7 (1.8) | 6.7×10-3 |
| Osteoclast differentiation | 7 (1.4) | 9.2×10-3 |
| Mucin type O-Glycan biosynthesis | 4 (0.8) | 0.037 |