Literature DB >> 33958799

Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition.

Gianni Carraro1, Justin Langerman2, Shan Sabri2, Zareeb Lorenzana3,4, Arunima Purkayastha5, Guangzhu Zhang1, Bindu Konda1, Cody J Aros5,6,7, Ben A Calvert3, Aleks Szymaniak8, Emily Wilson8, Michael Mulligan8, Priyanka Bhatt8, Junjie Lu8, Preethi Vijayaraj5, Changfu Yao1, David W Shia5,6,7, Andrew J Lund5,6, Edo Israely1, Tammy M Rickabaugh5, Jason Ernst2,9,10, Martin Mense8, Scott H Randell11, Eszter K Vladar12, Amy L Ryan3,4, Kathrin Plath13,14,15, John E Mahoney16, Barry R Stripp17, Brigitte N Gomperts18,19,20,21.   

Abstract

Cystic fibrosis (CF) is a lethal autosomal recessive disorder that afflicts more than 70,000 people. People with CF experience multi-organ dysfunction resulting from aberrant electrolyte transport across polarized epithelia due to mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene. CF-related lung disease is by far the most important determinant of morbidity and mortality. Here we report results from a multi-institute consortium in which single-cell transcriptomics were applied to define disease-related changes by comparing the proximal airway of CF donors (n = 19) undergoing transplantation for end-stage lung disease with that of previously healthy lung donors (n = 19). Disease-dependent differences observed include an overabundance of epithelial cells transitioning to specialized ciliated and secretory cell subsets coupled with an unexpected decrease in cycling basal cells. Our study yields a molecular atlas of the proximal airway epithelium that will provide insights for the development of new targeted therapies for CF airway disease.

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Year:  2021        PMID: 33958799      PMCID: PMC9009537          DOI: 10.1038/s41591-021-01332-7

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   53.440


  49 in total

Review 1.  Airway Gland Structure and Function.

Authors:  Jonathan H Widdicombe; Jeffrey J Wine
Journal:  Physiol Rev       Date:  2015-10       Impact factor: 37.312

2.  Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.

Authors:  Evan Z Macosko; Anindita Basu; Rahul Satija; James Nemesh; Karthik Shekhar; Melissa Goldman; Itay Tirosh; Allison R Bialas; Nolan Kamitaki; Emily M Martersteck; John J Trombetta; David A Weitz; Joshua R Sanes; Alex K Shalek; Aviv Regev; Steven A McCarroll
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

3.  Serum amyloid A activates the NLRP3 inflammasome and promotes Th17 allergic asthma in mice.

Authors:  Jennifer L Ather; Karina Ckless; Rebecca Martin; Kathryn L Foley; Benjamin T Suratt; Jonathan E Boyson; Katherine A Fitzgerald; Richard A Flavell; Stephanie C Eisenbarth; Matthew E Poynter
Journal:  J Immunol       Date:  2011-05-27       Impact factor: 5.422

4.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

5.  Correction of Airway Stem Cells: Genome Editing Approaches for the Treatment of Cystic Fibrosis.

Authors:  Nicholas E King; Shingo Suzuki; Cristina Barillà; Finn J Hawkins; Scott H Randell; Susan D Reynolds; Barry R Stripp; Brian R Davis
Journal:  Hum Gene Ther       Date:  2020-09-08       Impact factor: 5.695

6.  Isolation of basal cells and submucosal gland duct cells from mouse trachea.

Authors:  Ahmed E Hegab; Vi Luan Ha; Yasser S Attiga; Derek W Nickerson; Brigitte N Gomperts
Journal:  J Vis Exp       Date:  2012-09-14       Impact factor: 1.355

7.  Isolation and in vitro characterization of basal and submucosal gland duct stem/progenitor cells from human proximal airways.

Authors:  Ahmed E Hegab; Vi Luan Ha; Daphne O Darmawan; Jennifer L Gilbert; Aik T Ooi; Yasser S Attiga; Bharti Bisht; Derek W Nickerson; Brigitte N Gomperts
Journal:  Stem Cells Transl Med       Date:  2012-09-27       Impact factor: 6.940

8.  RFX3 modulation of FOXJ1 regulation of cilia genes in the human airway epithelium.

Authors:  Lukas Didon; Rachel K Zwick; Ion Wa Chao; Matthew S Walters; Rui Wang; Neil R Hackett; Ronald G Crystal
Journal:  Respir Res       Date:  2013-07-03

9.  Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium.

Authors:  Katherine C Goldfarbmuren; Nathan D Jackson; Satria P Sajuthi; Nathan Dyjack; Katie S Li; Cydney L Rios; Elizabeth G Plender; Michael T Montgomery; Jamie L Everman; Preston E Bratcher; Eszter K Vladar; Max A Seibold
Journal:  Nat Commun       Date:  2020-05-19       Impact factor: 14.919

10.  Transcriptional program of ciliated epithelial cells reveals new cilium and centrosome components and links to human disease.

Authors:  Ramona A Hoh; Timothy R Stowe; Erin Turk; Tim Stearns
Journal:  PLoS One       Date:  2012-12-31       Impact factor: 3.240

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  19 in total

1.  In Vivo Profiling of Individual Multiciliated Cells during Acute Influenza A Virus Infection.

Authors:  Cait E Hamele; Alistair B Russell; Nicholas S Heaton
Journal:  J Virol       Date:  2022-07-06       Impact factor: 6.549

2.  Long-Term Expanding Porcine Airway Organoids Provide Insights into the Pathogenesis and Innate Immunity of Porcine Respiratory Coronavirus Infection.

Authors:  Chengfan Jiang; Liang Li; Mei Xue; Liyuan Zhao; Xiang Liu; Wenzhe Wang; Li Feng; Pinghuang Liu
Journal:  J Virol       Date:  2022-06-28       Impact factor: 6.549

3.  A Single-Cell Atlas of Large and Small Airways at Birth in a Porcine Model of Cystic Fibrosis.

Authors:  Andrew L Thurman; Xiaopeng Li; Raul Villacreses; Wenjie Yu; Huiyu Gong; Steven E Mather; Guillermo S Romano-Ibarra; David K Meyerholz; David A Stoltz; Michael J Welsh; Ian M Thornell; Joseph Zabner; Alejandro A Pezzulo
Journal:  Am J Respir Cell Mol Biol       Date:  2022-06       Impact factor: 7.748

4.  A census of the lung: CellCards from LungMAP.

Authors:  Xin Sun; Anne-Karina Perl; Rongbo Li; Sheila M Bell; Eniko Sajti; Vladimir V Kalinichenko; Tanya V Kalin; Ravi S Misra; Hitesh Deshmukh; Geremy Clair; Jennifer Kyle; Laura E Crotty Alexander; Jorge A Masso-Silva; Joseph A Kitzmiller; Kathryn A Wikenheiser-Brokamp; Gail Deutsch; Minzhe Guo; Yina Du; Michael P Morley; Michael J Valdez; Haoze V Yu; Kang Jin; Eric E Bardes; Jarod A Zepp; Terren Neithamer; Maria C Basil; William J Zacharias; Jamie Verheyden; Randee Young; Gautam Bandyopadhyay; Sara Lin; Charles Ansong; Joshua Adkins; Nathan Salomonis; Bruce J Aronow; Yan Xu; Gloria Pryhuber; Jeff Whitsett; Edward E Morrisey
Journal:  Dev Cell       Date:  2021-12-21       Impact factor: 13.417

5.  Repeated injury promotes tracheobronchial tissue stem cell attrition.

Authors:  Moumita Ghosh; Cynthia L Hill; Alfahdah Alsudayri; Scott W Lallier; Don Hayes; Saranga Wijeratne; Zhang Hong Tan; Tendy Chiang; John E Mahoney; Gianni Carraro; Barry R Stripp; Susan D Reynolds
Journal:  Stem Cells Transl Med       Date:  2021-09-21       Impact factor: 7.655

Review 6.  Human Molecular Genetics and the long road to treating cystic fibrosis.

Authors:  Ann Harris
Journal:  Hum Mol Genet       Date:  2021-10-01       Impact factor: 5.121

Review 7.  Revisiting CFTR Interactions: Old Partners and New Players.

Authors:  Carlos M Farinha; Martina Gentzsch
Journal:  Int J Mol Sci       Date:  2021-12-07       Impact factor: 5.923

Review 8.  Immunoglobulin A Mucosal Immunity and Altered Respiratory Epithelium in Cystic Fibrosis.

Authors:  Sophie Gohy; Alexandra Moeremans; Charles Pilette; Amandine Collin
Journal:  Cells       Date:  2021-12-20       Impact factor: 6.600

Review 9.  Systems Biology and Bile Acid Signalling in Microbiome-Host Interactions in the Cystic Fibrosis Lung.

Authors:  David F Woods; Stephanie Flynn; Jose A Caparrós-Martín; Stephen M Stick; F Jerry Reen; Fergal O'Gara
Journal:  Antibiotics (Basel)       Date:  2021-06-24

10.  Airway Basal Cells Mediate Hypoxia-Induced EMT by Increasing Ribosome Biogenesis.

Authors:  Yapeng Hou; Yan Ding; Danni Du; Tong Yu; Wei Zhou; Yong Cui; Hongguang Nie
Journal:  Front Pharmacol       Date:  2021-12-09       Impact factor: 5.810

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