| Literature DB >> 33958622 |
Paul Curnow1, Katharine R Hendry2, Lucie Cassarino3.
Abstract
The stable isotopic composition of diatom silica is used as a proxy for nutrient utilisation in natural waters. This approach provides essential insight into the current and historic links between biological production, carbon cycling and climate. However, estimates of isotopic fractionation during diatom silica production from both laboratory and field studies are variable, and the biochemical pathways responsible remain unknown. Here, we investigate silicon isotopic fractionation through a series of chemical precipitation experiments that are analogous to the first stages of intracellular silica formation within the diatom silicon deposition vesicle. The novelty of our experiment is the inclusion of the R5 peptide, which is closely related to a natural biomolecule known to play a role in diatom silicification. Our results suggest that the presence of R5 induces a systematic but non-significant difference in fractionation behaviour. It thus appears that silicon isotopic fractionation in vitro is largely driven by an early kinetic fractionation during rapid precipitation that correlates with the initial amount of dissolved silica in the system. Our findings raise the question of how environmental changes might impact silicon isotopic fractionation in diatoms, and whether frustule archives record information in addition to silica consumption in surface water.Entities:
Year: 2021 PMID: 33958622 PMCID: PMC8102562 DOI: 10.1038/s41598-021-88881-6
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Schematic cartoon of silica formation in the diatom. Soluble silicic acid enters the diatom cell through active or passive transport and is moved to the silica deposition vesicle (SDV) via intracellular Si pools. The SDV is the site of frustule synthesis and the nascent frustule forms in the presence of various biomolecules, shown here as geometric shapes. See text for details.
Figure 2Si isotopic fractionation () as a function of the relative silicon loss from solution due to precipitation for a range of dissolved Si concentrations (mM). (a) Experiments after 8 days incubation. (b) Experiments after 1 h incubation. Each data point represents a different initial starting concentration of Si, coloured according to the key shown in each panel. Shaded areas in each panel group samples by comparable final conditions as shown. Error bars shows the 2 s.d. of the repeated measurements. The starting concentration 371 and 743 mM data are presented in Supplementary Table S1.
Figure 3Si isotopic fractionation () as a function of pH during the initial kinetic (triangles) reaction and at equilibrium (circles) for the range of dissolved Si concentrations 3.7–148 mM. Data are also presented in Supplementary Table S1.
Figure 4(a,b) Relative Si loss and (c–f) Si isotopic fractionation () as a function of time comparing the Abiotic (circles) and biomimetic (squares) experiment for initial dSi concentration of 18.6 mM (pink), 37.1 mM (orange), 74.3 mM (green) and 148 mM (blue). Solid and dashed lines show the best fit (f(x)=a exp(− bx)) with the 95% confidence bounds for the abiotic (coloured) and biomimetic (grey) experiments, respectively. The best fit equations are presented in Table 1. values are presented in Supplementary Tables S5 and S6.
Results of the curve fitting of the Si isotopic fractionation during precipitation () over time for the abiotic and the biomimetic (R5) experiment.
| Initial dSi | Abiotic | Biomimetic (R5) |
|---|---|---|
| 18.6 mM | ||
| 37.1 mM | ||
| 74.3 mM | ||
| 148 mM | ||
Figure 5State (day 10) for the abiotic (circles) and biomimetic (squares) precipitation for the four different Si concentrations, 18.6 mM (pink), 37.1 mM (orange), 74.3 mM (green) and 148 mM (blue).
Experimental design.
| Experiment | [dSi] (mM) | Total volume (ml) | Interval | Total time |
|---|---|---|---|---|
| 8 Days | 743, 371, 148, 74.3, 37.1, 18.6, 7.4, 3.7 | 10 | / | 8 days |
| 1 h | 148, 74.3, 37.1, 18.6, 7.4, 3.7 | 10 | / | 1 h |
| Abiotic | 148, 74.3, 37.1, 18.6 | 1 | 1 h, 1, 2, 4, 5, 6, 10 days | 10 days |
| Biomimetic (R5) | 148, 74.3, 37.1, 18.6 | 1 | 1 h, 1, 2, 4, 5, 6, 10 days | 10 days |