| Literature DB >> 33957950 |
Nan Zhang1, Xiao-Qing Cheng1, Bin Deng2, Jia Rui2, Luxia Qiu2, Zeyu Zhao2, Shengnan Lin2, Xingchun Liu2, Jingwen Xu2, Yao Wang2, Meng Yang2, Yuanzhao Zhu2, Jiefeng Huang2, Chan Liu2, Weikang Liu2, Li Luo2, Zhuoyang Li2, Peihua Li2, Tianlong Yang2, Zhi-Feng Li1, Shu-Yi Liang1, Xiao-Chen Wang1, Jian-Li Hu3, Tianmu Chen4.
Abstract
BACKGROUND: Severe fever with thrombocytopenia syndrome (SFTS) is an emerging infectious disease that is regionally distributed in Asia, with high fatality. Constructing the transmission model of SFTS could help provide clues for disease control and fill the gap in research on SFTS models.Entities:
Keywords: Bunyavirus; Dynamic; Environment; Mathematical model; Severe fever with thrombocytopenia syndrome; Ticks; Transmission
Year: 2021 PMID: 33957950 PMCID: PMC8100741 DOI: 10.1186/s13071-021-04732-3
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Fig. 1Flowchart of study design
Fig. 2Flowchart of the MMDM without intervention
Definition and value of parameters
| Parameter | Definition | Value | Unit | Method |
|---|---|---|---|---|
| Person | ||||
| | Person-to-person transmissibility coefficient | – | (Person*day)−1 | Model fitting |
| | Relative transmissibility coefficient of unapparent infection | 1 | 1 | – |
| p | Proportion of latent infection | 0.043 | 1 | Ref. [ |
| 1/ | Incubation period | 11 | Day | Ref. [ |
| 1/ | Infectious period of dominant infection | 14 | Day | Ref. [ |
| 1/ | Latent infection period | 14 | Day | – |
| | Fatality rate | 0.16 | 1 | Ref. [ |
| | Birth rate | 0.009481 | 1 | Statistical Yearbook of Jiangsu Province |
| | Mortality rate | 0.007003 | 1 | Statistical Yearbook of Jiangsu Province |
| Ticks | ||||
| | Coefficient of transmissibility between ticks | 0 | (Pieces*day)−1 | – |
| | Coefficient of tick-to-human transmissibility | 8 | (Person*day)−1 | Ref. [ |
| | Coefficient of tick-to-host infection | 8 | (Pieces*day)−1 | Ref. [ |
| 1/ | Incubation period of ticks | 7 | Day | Ref. [ |
| Host animal | ||||
| | Coefficient of transmissibility between host animal | 2 | (Pieces*day)−1 | Ref. [ |
| | Coefficient of transmissibility rate of host animal to human | 2 | (Pieces*day)−1 | Ref. [ |
| | Coefficient of host animal infection to ticks | 8 | (Person*day)−1 | Ref. [ |
| 1/ | Host animal incubation period | 12 | Day | Ref. [ |
| | Rate of host animal discharge to the environment | 10 | – | Ref. [ |
| Environment | ||||
| | Coefficient of transmissibility rate of the environment to humans and host animals | 9 | (Human/animal*day)−1 | Ref. [ |
| | Environmental tick density | 0.047494291 | One km2/person (flag hour) | Jiangsu Province surveillance data |
Combined transmissibility matrix
| 1 | 2 | 9 | 8 | 2 | 8 | 8 | |
| 1/2 | 1 | 9/2 | 4 | 1 | 4 | 4 | |
| 1/9 | 2/9 | 1 | 8/9 | 2/9 | 8/9 | 8/9 | |
| 1/8 | 1/4 | 9/8 | 1 | 1/4 | 1 | 1 | |
| 1/2 | 1 | 9/2 | 4 | 1 | 4 | 4 | |
| 1/8 | 1/4 | 9/8 | 1 | 1/4 | 1 | 1 | |
| 1/8 | 1/4 | 9/8 | 1 | 1/4 | 1 | 1 |
Fig. 3Flowchart of the MMDM with interventions
Fig. 4Model fitting results of the model to the reported SFTS incidence data from 2011 to 2019 in Jiangsu Province, China
Model fitting result of 2011–2019
| Year | ||
|---|---|---|
| 2011 | 0.573878 | < 0.05 |
| 2012 | 0.299520 | < 0.05 |
| 2013 | 0.482155 | < 0.05 |
| 2014 | 0.764983 | < 0.05 |
| 2015 | 0.408163 | < 0.05 |
| 2016 | 0.767604 | < 0.05 |
| 2017 | 0.776788 | < 0.05 |
| 2018 | 0.801787 | < 0.05 |
| 2019 | 0.758567 | < 0.05 |
Interventional effect of cutting off different transmission routes on SFTS
| “Knock-out” scenario* | Cumulative number of cases | Total attack rate | Peak time (days) | Peak attack rate |
|---|---|---|---|---|
| 0 | 0 | 0 | 0 | |
| 671 | 0 | 205 | 0 | |
| 0 | 0 | 198 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 205 | 0 | ||
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 0 | 0 | 198 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 198 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 198 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 198 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 0 | 0 | 7 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 10 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 671 | 0 | 205 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 10 | 0 | |
| 671 | 0 | 205 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 198 | 0 | |
| 0 | 0 | 10 | 0 | |
| 671 | 0 | 205 | 0 | |
| 0 | 0 | 10 | 0 | |
| 0 | 0 | 10 | 0 |
*“Knock-out” means to simulate cutting off the transmission routes by setting a parameter to 0, and estimates the contribution of the parameter by calculating the number of reduced cases or the total attack rate. The different scenario means which parameter was set as 0
Interventional effect of taking joint interventions
| Intervention | Cumulative number of cases | Total attack rate | Peak time (days) | Peak attack rate |
|---|---|---|---|---|
| 530 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 530 | 0.00 | 197 | 0 | |
| 530 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 | |
| 531 | 0.00 | 197 | 0 |
aγ represent the intervention of shorten disease course and ϕ represent the proportion of isolation
Interventional effect of taking isolation
| Isolation ratio | Cumulative number of cases | Cumulative attack rate | Peak time (days) | Peak attack rate |
|---|---|---|---|---|
| 50% | 530 | 0.00 | 201 | 0.00 |
| 60% | 530 | 0.00 | 201 | 0.00 |
| 70% | 530 | 0.00 | 201 | 0.00 |
| 80% | 530 | 0.00 | 201 | 0.00 |
| 90% | 530 | 0.00 | 201 | 0.00 |
| 98% | 530 | 0.00 | 201 | 0.00 |