| Literature DB >> 33953941 |
Mauricio Acelas1, Analio Dugarte-Dugarte2, Arnold R Romero Bohórquez1, José Antonio Henao3, José Miguel Delgado2, Graciela Díaz de Delgado2.
Abstract
The title heterocyclic compound, C20H27N, has been prepared in good yield (72%) via a BiCl3-catalyzed cationic Povarov reaction between N-propargyl-4-methyl-aniline and (±)-citronellal. The X-ray single-crystal study indicates that the structure consists of mol-ecules connected by C-H⋯π contacts to produce chains, which pack in a sandwich-herringbone fashion along the b-axis direction. Hirshfeld surface analysis indicates that H⋯H inter-actions dominate by contributing 79.1% to the total surface. Energy frameworks and DFT calculations indicate a major contribution of dispersive forces to the total inter-action energy. © Acelas et al. 2021.Entities:
Keywords: DFT calculations; Hirshfeld surface; Povarov reaction; crystal structure; energy frameworks; octahydroacridine; spectroscopic characterization
Year: 2021 PMID: 33953941 PMCID: PMC8061106 DOI: 10.1107/S2056989021001183
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of 3 with the atom- and ring-labeling scheme. Ellipsoids are drawn at the 30% level of probability.
Figure 2The packing of 3 showing chains of molecules connected by C—H⋯π interactions along the b-axis direction.
Figure 3The packing arrangement viewed down [010]. Some short contacts are shown with dashed lines: C—H⋯Cg3 in red and C—H⋯C in orange and green.
Figure 4Fingerprint plots for the d norm parameter mapped onto the Hirshfeld surface for 3.
Figure 5Energy frameworks calculated for compound 3 viewed down [010] represented within 2 × 2 × 2 unit cells. The radii of the cylinders were scaled to 80 arbitrary units with a cut-off value of 10 kJ mol−1. E ele , E dis, and E tot are represented (left to right) in red, green, and blue, respectively.
Figure 6X-ray powder diffraction patterns of compound 3. Experimental (bottom, red) and simulated from single-crystal data (top, blue).
Analytical data for 3: ATR–FTIR, IE–MS, 1H-NMR, 13C-NMR
|
| ||
| 3286 ν (C≡CH) | 2947 ν (CH) | 2929 ν (CH) |
| 2864 ν (CH) | 1504 ν (C=Carom) | 1182 ν (C—N) |
|
| ||
| 281.3 ( | 267.3 (26) | 266.3 (100) |
|
| ||
| δH 0.91–1.05 ( | 1.01 ( | 1.07 ( |
| 1.14–1.26 ( | 1.35 ( | 1.41 ( |
| 1.48–1.62 ( | 1.77–1.85 ( | 1.95–2.02 ( |
| 2.18 ( | 2.29 ( | 2.30–2.36 ( |
| 3.03 ( | 4.04 ( | 4.17 ( |
| 6.79 ( | 6.96 ( | 7.08 ( |
|
| ||
| δC 20.64(7-Me) | 22.34(3-Me) | 25.29(9-Me) |
| 25.41(9-Me) | 25.57(4) | 31.36(3) |
| 34.34(9) | 34.69(2) | 38.80(CH2-Propargyl) |
| 41.85(1) | 47.30(9a) | 57.41(4a) |
| 71.02(1-Propargyl) | 81.46(2-Propargyl) | 113.70(5) |
| 125.30(6) | 126.21(7) | 127.35(8) |
| 134.40(8a) | 141.85(10 |
Signals were designated as: s, singlet; d, doublet; dd, doublet of doublets; ddd, doublet of doublets of doublets; t, triplet; td, triplet of doublets; q, quartet; m, multiplet; br., broad.
Figure 7Experimental and calculated (B3LYP 6–31) IR spectra of compound 3 and Correlation between calculated νcalc and observed νobs frequencies.
Figure 8EI (70 eV) mass spectrum of 3 and main fragmentation pattern observed in the MS spectrum.
Figure 91H-NMR spectrum for 3. The inserts emphasize the alkyne proton region and the assignment of a trans-fusion pattern of rings A and B.
Figure 1013C-NMR and DEPT-135 spectra.
Experimental details
| Crystal data | |
| Chemical formula | C20H27N |
|
| 281.42 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 293 |
|
| 10.05103 (9), 10.62943 (11), 15.64759 (16) |
|
| 1671.74 (3) |
|
| 4 |
| Radiation type | Cu |
| μ (mm−1) | 0.48 |
| Crystal size (mm) | 0.48 × 0.33 × 0.29 |
| Data collection | |
| Diffractometer | Rigaku Pilatus 200K |
| Absorption correction | Multi-scan ( |
|
| 0.573, 1.000 |
| No. of measured, independent and observed [ | 6660, 3181, 3160 |
|
| 0.013 |
| (sin θ/λ)max (Å−1) | 0.624 |
| Refinement | |
|
| 0.039, 0.107, 1.11 |
| No. of reflections | 3181 |
| No. of parameters | 195 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.15, −0.19 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.3 (2) |
Computer programs: CrystalClear-SM Expert (Rigaku/MSC, 2015 ▸), CrysAlis PRO (Rigaku OD, 2019 ▸), SHELXT2014/5 (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸), DIAMOND (Brandenburg, 1999 ▸), OLEX2 (Dolomanov et al., 2009 ▸), enCIFer (Allen et al., 2004 ▸) and publCIF (Westrip, 2010 ▸).
| C20H27N | |
| Melting point: 367 K | |
| Orthorhombic, | Cu |
| Cell parameters from 6301 reflections | |
| θ = 2.8–74.2° | |
| µ = 0.48 mm−1 | |
| Block, colorless | |
| 0.48 × 0.33 × 0.29 mm |
| Rigaku Pilatus 200K diffractometer | 3181 independent reflections |
| Radiation source: fine-focus sealed X-ray tube, Enhance (Cu) X-ray Source | 3160 reflections with |
| Graphite monochromator | |
| Detector resolution: 5.8140 pixels mm-1 | θmax = 74.2°, θmin = 5.7° |
| profile data from ω–scans | |
| Absorption correction: multi-scan (CrysAlisPRO; Rigaku OD, 2019) | |
| 6660 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.15 e Å−3 | |
| 3181 reflections | Δρmin = −0.19 e Å−3 |
| 195 parameters | Extinction correction: SHELXL2018/3 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.037 (4) |
| Primary atom site location: dual | Absolute structure: Flack |
| Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.3 (2) |
| Experimental. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| N1 | 0.38131 (16) | 0.67573 (14) | 0.32881 (9) | 0.0587 (4) | |
| C1 | 0.5388 (2) | 0.6967 (2) | 0.54905 (12) | 0.0651 (5) | |
| H1A | 0.522689 | 0.649842 | 0.601246 | 0.078* | |
| H1B | 0.631139 | 0.684239 | 0.533165 | 0.078* | |
| C2 | 0.5154 (2) | 0.8351 (2) | 0.56596 (13) | 0.0698 (5) | |
| H2A | 0.425363 | 0.847263 | 0.586694 | 0.084* | |
| H2B | 0.576286 | 0.863906 | 0.609906 | 0.084* | |
| C3 | 0.53583 (17) | 0.91189 (18) | 0.48576 (13) | 0.0620 (4) | |
| H3 | 0.628642 | 0.900743 | 0.468121 | 0.074* | |
| C4 | 0.44845 (17) | 0.86058 (16) | 0.41413 (12) | 0.0566 (4) | |
| H4A | 0.466096 | 0.907853 | 0.362330 | 0.068* | |
| H4B | 0.355835 | 0.873562 | 0.429161 | 0.068* | |
| C5 | 0.47082 (15) | 0.72069 (16) | 0.39624 (10) | 0.0508 (4) | |
| H5 | 0.562872 | 0.708887 | 0.377202 | 0.061* | |
| C6 | 0.44943 (15) | 0.64426 (16) | 0.47810 (9) | 0.0484 (4) | |
| H6 | 0.357383 | 0.659273 | 0.496077 | 0.058* | |
| C7 | 0.34579 (16) | 0.54953 (16) | 0.32338 (9) | 0.0517 (4) | |
| C8 | 0.38003 (15) | 0.46188 (15) | 0.38711 (9) | 0.0492 (4) | |
| C9 | 0.46345 (16) | 0.50046 (17) | 0.46439 (9) | 0.0513 (4) | |
| C10 | 0.27175 (19) | 0.50620 (18) | 0.25324 (11) | 0.0621 (4) | |
| H10 | 0.246012 | 0.563166 | 0.211266 | 0.075* | |
| C11 | 0.23606 (19) | 0.38138 (19) | 0.24481 (12) | 0.0648 (5) | |
| H11 | 0.188546 | 0.355866 | 0.196845 | 0.078* | |
| C12 | 0.26960 (18) | 0.29373 (18) | 0.30627 (12) | 0.0620 (4) | |
| C13 | 0.34035 (17) | 0.33742 (17) | 0.37640 (11) | 0.0579 (4) | |
| H13 | 0.362622 | 0.279976 | 0.418889 | 0.069* | |
| C14 | 0.5139 (2) | 1.0515 (2) | 0.49995 (16) | 0.0780 (6) | |
| H14A | 0.423655 | 1.065695 | 0.517634 | 0.117* | |
| H14B | 0.530617 | 1.096137 | 0.447712 | 0.117* | |
| H14C | 0.573460 | 1.081061 | 0.543498 | 0.117* | |
| C15 | 0.2335 (3) | 0.1564 (2) | 0.29657 (17) | 0.0872 (7) | |
| H15A | 0.222116 | 0.119406 | 0.352062 | 0.131* | |
| H15B | 0.303458 | 0.113374 | 0.266677 | 0.131* | |
| H15C | 0.152176 | 0.149164 | 0.264824 | 0.131* | |
| C16 | 0.60856 (18) | 0.4612 (2) | 0.44781 (13) | 0.0689 (5) | |
| H16A | 0.662066 | 0.482466 | 0.496540 | 0.103* | |
| H16B | 0.641587 | 0.504656 | 0.398371 | 0.103* | |
| H16C | 0.612541 | 0.372124 | 0.438170 | 0.103* | |
| C17 | 0.4133 (2) | 0.43261 (19) | 0.54534 (11) | 0.0659 (5) | |
| H17A | 0.463342 | 0.460816 | 0.593947 | 0.099* | |
| H17B | 0.424506 | 0.343467 | 0.538626 | 0.099* | |
| H17C | 0.320781 | 0.451316 | 0.553822 | 0.099* | |
| C18 | 0.37514 (19) | 0.74991 (18) | 0.24998 (11) | 0.0614 (4) | |
| H18A | 0.400066 | 0.696834 | 0.202166 | 0.074* | |
| H18B | 0.439266 | 0.817919 | 0.253479 | 0.074* | |
| C19 | 0.2427 (2) | 0.80308 (18) | 0.23385 (11) | 0.0646 (5) | |
| C20 | 0.1372 (3) | 0.8443 (2) | 0.21983 (15) | 0.0835 (6) | |
| H20 | 0.053201 | 0.877163 | 0.208666 | 0.100* |
| N1 | 0.0707 (9) | 0.0631 (8) | 0.0422 (7) | −0.0078 (7) | −0.0101 (6) | 0.0074 (6) |
| C1 | 0.0652 (10) | 0.0769 (11) | 0.0531 (9) | −0.0001 (9) | −0.0168 (8) | 0.0011 (8) |
| C2 | 0.0722 (11) | 0.0804 (12) | 0.0567 (10) | −0.0046 (9) | −0.0130 (8) | −0.0101 (9) |
| C3 | 0.0471 (8) | 0.0699 (11) | 0.0689 (10) | −0.0042 (8) | −0.0036 (8) | −0.0074 (9) |
| C4 | 0.0517 (8) | 0.0632 (9) | 0.0548 (8) | −0.0022 (7) | −0.0015 (7) | 0.0025 (7) |
| C5 | 0.0431 (7) | 0.0651 (9) | 0.0443 (8) | −0.0003 (6) | 0.0012 (6) | 0.0006 (7) |
| C6 | 0.0403 (7) | 0.0641 (9) | 0.0407 (7) | 0.0037 (6) | −0.0012 (5) | 0.0012 (6) |
| C7 | 0.0500 (8) | 0.0644 (9) | 0.0405 (7) | 0.0018 (7) | 0.0005 (6) | 0.0004 (6) |
| C8 | 0.0438 (7) | 0.0622 (8) | 0.0415 (7) | 0.0039 (6) | 0.0034 (6) | 0.0000 (6) |
| C9 | 0.0485 (8) | 0.0647 (9) | 0.0406 (7) | 0.0083 (7) | −0.0011 (6) | 0.0022 (6) |
| C10 | 0.0706 (11) | 0.0699 (10) | 0.0458 (8) | −0.0005 (9) | −0.0104 (8) | 0.0001 (7) |
| C11 | 0.0635 (10) | 0.0775 (11) | 0.0535 (9) | −0.0047 (8) | −0.0080 (8) | −0.0071 (8) |
| C12 | 0.0598 (9) | 0.0662 (10) | 0.0600 (9) | −0.0047 (8) | 0.0047 (8) | −0.0057 (8) |
| C13 | 0.0581 (9) | 0.0640 (9) | 0.0515 (8) | 0.0032 (7) | 0.0038 (7) | 0.0035 (7) |
| C14 | 0.0715 (12) | 0.0732 (12) | 0.0892 (15) | −0.0048 (10) | −0.0069 (10) | −0.0125 (11) |
| C15 | 0.1057 (17) | 0.0729 (13) | 0.0830 (14) | −0.0185 (12) | −0.0037 (13) | −0.0044 (11) |
| C16 | 0.0535 (9) | 0.0854 (12) | 0.0676 (10) | 0.0171 (9) | −0.0066 (8) | −0.0088 (9) |
| C17 | 0.0826 (12) | 0.0698 (10) | 0.0454 (8) | 0.0057 (9) | −0.0007 (8) | 0.0085 (7) |
| C18 | 0.0699 (10) | 0.0729 (10) | 0.0415 (8) | −0.0074 (8) | 0.0004 (7) | 0.0087 (7) |
| C19 | 0.0803 (13) | 0.0706 (10) | 0.0429 (8) | −0.0053 (9) | −0.0014 (8) | 0.0107 (7) |
| C20 | 0.0827 (15) | 0.0995 (15) | 0.0682 (13) | 0.0113 (12) | −0.0027 (11) | 0.0173 (12) |
| N1—C7 | 1.391 (2) | C9—C17 | 1.542 (2) |
| N1—C18 | 1.465 (2) | C10—C11 | 1.381 (3) |
| N1—C5 | 1.467 (2) | C10—H10 | 0.9300 |
| C1—C2 | 1.514 (3) | C11—C12 | 1.381 (3) |
| C1—C6 | 1.533 (2) | C11—H11 | 0.9300 |
| C1—H1A | 0.9700 | C12—C13 | 1.388 (3) |
| C1—H1B | 0.9700 | C12—C15 | 1.512 (3) |
| C2—C3 | 1.511 (3) | C13—H13 | 0.9300 |
| C2—H2A | 0.9700 | C14—H14A | 0.9600 |
| C2—H2B | 0.9700 | C14—H14B | 0.9600 |
| C3—C14 | 1.517 (3) | C14—H14C | 0.9600 |
| C3—C4 | 1.525 (2) | C15—H15A | 0.9600 |
| C3—H3 | 0.9800 | C15—H15B | 0.9600 |
| C4—C5 | 1.530 (2) | C15—H15C | 0.9600 |
| C4—H4A | 0.9700 | C16—H16A | 0.9600 |
| C4—H4B | 0.9700 | C16—H16B | 0.9600 |
| C5—C6 | 1.532 (2) | C16—H16C | 0.9600 |
| C5—H5 | 0.9800 | C17—H17A | 0.9600 |
| C6—C9 | 1.550 (2) | C17—H17B | 0.9600 |
| C6—H6 | 0.9800 | C17—H17C | 0.9600 |
| C7—C10 | 1.404 (2) | C18—C19 | 1.469 (3) |
| C7—C8 | 1.407 (2) | C18—H18A | 0.9700 |
| C8—C13 | 1.392 (2) | C18—H18B | 0.9700 |
| C8—C9 | 1.528 (2) | C19—C20 | 1.168 (3) |
| C9—C16 | 1.539 (2) | C20—H20 | 0.9300 |
| C7—N1—C18 | 117.18 (14) | C8—C9—C6 | 108.94 (13) |
| C7—N1—C5 | 121.04 (13) | C16—C9—C6 | 112.13 (14) |
| C18—N1—C5 | 117.14 (14) | C17—C9—C6 | 108.53 (13) |
| C2—C1—C6 | 112.89 (15) | C11—C10—C7 | 121.85 (16) |
| C2—C1—H1A | 109.0 | C11—C10—H10 | 119.1 |
| C6—C1—H1A | 109.0 | C7—C10—H10 | 119.1 |
| C2—C1—H1B | 109.0 | C10—C11—C12 | 121.23 (17) |
| C6—C1—H1B | 109.0 | C10—C11—H11 | 119.4 |
| H1A—C1—H1B | 107.8 | C12—C11—H11 | 119.4 |
| C3—C2—C1 | 111.02 (17) | C11—C12—C13 | 116.75 (17) |
| C3—C2—H2A | 109.4 | C11—C12—C15 | 121.55 (18) |
| C1—C2—H2A | 109.4 | C13—C12—C15 | 121.69 (18) |
| C3—C2—H2B | 109.4 | C12—C13—C8 | 124.06 (16) |
| C1—C2—H2B | 109.4 | C12—C13—H13 | 118.0 |
| H2A—C2—H2B | 108.0 | C8—C13—H13 | 118.0 |
| C2—C3—C14 | 112.77 (19) | C3—C14—H14A | 109.5 |
| C2—C3—C4 | 109.82 (15) | C3—C14—H14B | 109.5 |
| C14—C3—C4 | 111.95 (16) | H14A—C14—H14B | 109.5 |
| C2—C3—H3 | 107.3 | C3—C14—H14C | 109.5 |
| C14—C3—H3 | 107.3 | H14A—C14—H14C | 109.5 |
| C4—C3—H3 | 107.3 | H14B—C14—H14C | 109.5 |
| C3—C4—C5 | 113.42 (14) | C12—C15—H15A | 109.5 |
| C3—C4—H4A | 108.9 | C12—C15—H15B | 109.5 |
| C5—C4—H4A | 108.9 | H15A—C15—H15B | 109.5 |
| C3—C4—H4B | 108.9 | C12—C15—H15C | 109.5 |
| C5—C4—H4B | 108.9 | H15A—C15—H15C | 109.5 |
| H4A—C4—H4B | 107.7 | H15B—C15—H15C | 109.5 |
| N1—C5—C4 | 110.99 (13) | C9—C16—H16A | 109.5 |
| N1—C5—C6 | 110.04 (13) | C9—C16—H16B | 109.5 |
| C4—C5—C6 | 109.98 (13) | H16A—C16—H16B | 109.5 |
| N1—C5—H5 | 108.6 | C9—C16—H16C | 109.5 |
| C4—C5—H5 | 108.6 | H16A—C16—H16C | 109.5 |
| C6—C5—H5 | 108.6 | H16B—C16—H16C | 109.5 |
| C5—C6—C1 | 109.31 (14) | C9—C17—H17A | 109.5 |
| C5—C6—C9 | 113.23 (13) | C9—C17—H17B | 109.5 |
| C1—C6—C9 | 113.91 (13) | H17A—C17—H17B | 109.5 |
| C5—C6—H6 | 106.6 | C9—C17—H17C | 109.5 |
| C1—C6—H6 | 106.6 | H17A—C17—H17C | 109.5 |
| C9—C6—H6 | 106.6 | H17B—C17—H17C | 109.5 |
| N1—C7—C10 | 120.02 (14) | N1—C18—C19 | 112.97 (15) |
| N1—C7—C8 | 122.17 (14) | N1—C18—H18A | 109.0 |
| C10—C7—C8 | 117.80 (15) | C19—C18—H18A | 109.0 |
| C13—C8—C7 | 118.29 (15) | N1—C18—H18B | 109.0 |
| C13—C8—C9 | 120.52 (14) | C19—C18—H18B | 109.0 |
| C7—C8—C9 | 121.15 (15) | H18A—C18—H18B | 107.8 |
| C8—C9—C16 | 108.30 (13) | C20—C19—C18 | 178.9 (2) |
| C8—C9—C17 | 110.19 (14) | C19—C20—H20 | 180.0 |
| C16—C9—C17 | 108.76 (15) | ||
| C6—C1—C2—C3 | −57.2 (2) | C10—C7—C8—C9 | 178.42 (14) |
| C1—C2—C3—C14 | −179.78 (16) | C13—C8—C9—C16 | 78.32 (19) |
| C1—C2—C3—C4 | 54.6 (2) | C7—C8—C9—C16 | −99.15 (18) |
| C2—C3—C4—C5 | −55.6 (2) | C13—C8—C9—C17 | −40.5 (2) |
| C14—C3—C4—C5 | 178.33 (16) | C7—C8—C9—C17 | 142.00 (16) |
| C7—N1—C5—C4 | −155.23 (15) | C13—C8—C9—C6 | −159.48 (14) |
| C18—N1—C5—C4 | 49.6 (2) | C7—C8—C9—C6 | 23.05 (19) |
| C7—N1—C5—C6 | −33.3 (2) | C5—C6—C9—C8 | −48.98 (16) |
| C18—N1—C5—C6 | 171.56 (14) | C1—C6—C9—C8 | −174.71 (13) |
| C3—C4—C5—N1 | 178.18 (14) | C5—C6—C9—C16 | 70.87 (17) |
| C3—C4—C5—C6 | 56.18 (18) | C1—C6—C9—C16 | −54.85 (19) |
| N1—C5—C6—C1 | −177.26 (14) | C5—C6—C9—C17 | −168.97 (13) |
| C4—C5—C6—C1 | −54.69 (17) | C1—C6—C9—C17 | 65.30 (18) |
| N1—C5—C6—C9 | 54.59 (17) | N1—C7—C10—C11 | 179.08 (18) |
| C4—C5—C6—C9 | 177.16 (12) | C8—C7—C10—C11 | −1.8 (3) |
| C2—C1—C6—C5 | 56.8 (2) | C7—C10—C11—C12 | 1.3 (3) |
| C2—C1—C6—C9 | −175.44 (15) | C10—C11—C12—C13 | 0.1 (3) |
| C18—N1—C7—C10 | −18.0 (2) | C10—C11—C12—C15 | −178.6 (2) |
| C5—N1—C7—C10 | −173.17 (15) | C11—C12—C13—C8 | −1.0 (3) |
| C18—N1—C7—C8 | 162.92 (16) | C15—C12—C13—C8 | 177.72 (19) |
| C5—N1—C7—C8 | 7.7 (2) | C7—C8—C13—C12 | 0.5 (3) |
| N1—C7—C8—C13 | 180.00 (15) | C9—C8—C13—C12 | −177.06 (15) |
| C10—C7—C8—C13 | 0.9 (2) | C7—N1—C18—C19 | 86.5 (2) |
| N1—C7—C8—C9 | −2.5 (2) | C5—N1—C18—C19 | −117.36 (18) |