Literature DB >> 33953658

Comparison and evaluation of pair distribution functions, using a similarity measure based on cross-correlation functions.

Stefan Habermehl1, Carina Schlesinger1, Dragica Prill1.   

Abstract

An approach for the comparison of pair distribution functions (PDFs) has been developed using a similarity measure based on cross-correlation functions. The PDF is very sensitive to changes in the local structure, i.e. small deviations in the structure can cause large signal shifts and significant discrepancies between the PDFs. Therefore, a comparison based on pointwise differences (e.g. R values and difference curves) may lead to the assumption that the investigated PDFs as well as the corresponding structural models are not in agreement at all, whereas a careful visual inspection of the investigated structural models and corresponding PDFs may reveal a relatively good match. To quantify the agreement of different PDFs for those cases an alternative approach is introduced: the similarity measure based on cross-correlation functions. In this paper, the power of this application of the similarity measure to the analysis of PDFs is highlighted. The similarity measure is compared with the classical R wp values as representative of the comparison based on pointwise differences as well as with the Pearson product-moment correlation coefficient, using polymorph IV of barbituric acid as an example. © Stefan Habermehl et al. 2021.

Entities:  

Keywords:  R values; cross-correlation functions; pair distribution functions; similarity measures; total scattering techniques

Year:  2021        PMID: 33953658      PMCID: PMC8056768          DOI: 10.1107/S1600576721001722

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   4.868


  20 in total

1.  Towards solution and refinement of organic crystal structures by fitting to the atomic pair distribution function.

Authors:  Dragica Prill; Pavol Juhás; Simon J L Billinge; Martin U Schmidt
Journal:  Acta Crystallogr A Found Adv       Date:  2016-01-01       Impact factor: 2.290

2.  A structural investigation into the compaction behavior of pharmaceutical composites using powder X-ray diffraction and total scattering analysis.

Authors:  Michael D Moore; Alison M Steinbach; Ira S Buckner; Peter L D Wildfong
Journal:  Pharm Res       Date:  2009-08-28       Impact factor: 4.200

3.  Data requirements for the reliable use of atomic pair distribution functions in amorphous pharmaceutical fingerprinting.

Authors:  Timur Dykhne; Ryan Taylor; Alastair Florence; Simon J L Billinge
Journal:  Pharm Res       Date:  2011-01-08       Impact factor: 4.200

4.  The thermodynamically stable form of solid barbituric acid: the enol tautomer.

Authors:  Martin U Schmidt; Jürgen Brüning; Jürgen Glinnemann; Maximilian W Hützler; Philipp Mörschel; Svetlana N Ivashevskaya; Jacco van de Streek; Dario Braga; Lucia Maini; Michele R Chierotti; Roberto Gobetto
Journal:  Angew Chem Int Ed Engl       Date:  2011-07-08       Impact factor: 15.336

5.  A numerical method for deriving shape functions of nanoparticles for pair distribution function refinements.

Authors:  Tedi Marie Usher; Daniel Olds; Jue Liu; Katharine Page
Journal:  Acta Crystallogr A Found Adv       Date:  2018-06-06       Impact factor: 2.290

6.  Amorphous metal-organic frameworks.

Authors:  Thomas D Bennett; Anthony K Cheetham
Journal:  Acc Chem Res       Date:  2014-04-07       Impact factor: 22.384

7.  Structure determination from powder data without prior indexing, using a similarity measure based on cross-correlation functions.

Authors:  Stefan Habermehl; Philipp Mörschel; Pierre Eisenbrandt; Sonja M Hammer; Martin U Schmidt
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2014-03-28

Review 8.  Chemistry of Metal-organic Frameworks Monitored by Advanced X-ray Diffraction and Scattering Techniques.

Authors:  Matjaž Mazaj; Venčeslav Kaučič; Nataša Zabukovec Logar
Journal:  Acta Chim Slov       Date:  2016       Impact factor: 1.735

9.  Single-Crystal X-ray Diffraction Structure of the Stable Enol Tautomer Polymorph of Barbituric Acid at 224 and 95 K.

Authors:  Madalynn G Marshall; Valerie Lopez-Diaz; Bruce S Hudson
Journal:  Angew Chem Int Ed Engl       Date:  2015-12-14       Impact factor: 15.336

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  5 in total

Review 1.  Structural Analysis of Molecular Materials Using the Pair Distribution Function.

Authors:  Maxwell W Terban; Simon J L Billinge
Journal:  Chem Rev       Date:  2021-11-17       Impact factor: 60.622

2.  Ambiguous structure determination from powder data: four different structural models of 4,11-di-fluoro-quinacridone with similar X-ray powder patterns, fit to the PDF, SSNMR and DFT-D.

Authors:  Carina Schlesinger; Arnd Fitterer; Christian Buchsbaum; Stefan Habermehl; Michele R Chierotti; Carlo Nervi; Martin U Schmidt
Journal:  IUCrJ       Date:  2022-05-14       Impact factor: 5.588

3.  Multivariate analysis of disorder in metal-organic frameworks.

Authors:  Adam F Sapnik; Irene Bechis; Alice M Bumstead; Timothy Johnson; Philip A Chater; David A Keen; Kim E Jelfs; Thomas D Bennett
Journal:  Nat Commun       Date:  2022-04-21       Impact factor: 17.694

4.  Structure determination of organic compounds by a fit to the pair distribution function from scratch without prior indexing.

Authors:  Carina Schlesinger; Stefan Habermehl; Dragica Prill
Journal:  J Appl Crystallogr       Date:  2021-05-09       Impact factor: 3.304

5.  Structure determination from unindexed powder data from scratch by a global optimization approach using pattern comparison based on cross-correlation functions.

Authors:  Stefan Habermehl; Carina Schlesinger; Martin U Schmidt
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2022-03-16
  5 in total

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