Literature DB >> 35180676

Design and engineering of allosteric communications in proteins.

Jiaxing Chen1, Yashavantha L Vishweshwaraiah2, Nikolay V Dokholyan3.   

Abstract

Allostery in proteins plays an important role in regulating protein activities and influencing many biological processes such as gene expression, enzyme catalysis, and cell signaling. The process of allostery takes place when a signal detected at a site on a protein is transmitted via a mechanical pathway to a functional site and, thus, influences its activity. The pathway of allosteric communication consists of amino acids that form a network with covalent and non-covalent bonds. By mutating residues in this allosteric network, protein engineers have successfully established novel allosteric pathways to achieve desired properties in the target protein. In this review, we highlight the most recent and state-of-the-art techniques for allosteric communication engineering. We also discuss the challenges that need to be overcome and future directions for engineering protein allostery.
Copyright © 2022 Elsevier Ltd. All rights reserved.

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Year:  2022        PMID: 35180676      PMCID: PMC8957532          DOI: 10.1016/j.sbi.2022.102334

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  49 in total

Review 1.  Methods for the directed evolution of proteins.

Authors:  Michael S Packer; David R Liu
Journal:  Nat Rev Genet       Date:  2015-06-09       Impact factor: 53.242

2.  Engineering Pak1 Allosteric Switches.

Authors:  Onur Dagliyan; Andrei V Karginov; Sho Yagishita; Madeline E Gale; Hui Wang; Celine DerMardirossian; Claire M Wells; Nikolay V Dokholyan; Haruo Kasai; Klaus M Hahn
Journal:  ACS Synth Biol       Date:  2017-04-06       Impact factor: 5.110

3.  Allostery without conformational change. A plausible model.

Authors:  A Cooper; D T Dryden
Journal:  Eur Biophys J       Date:  1984       Impact factor: 1.733

4.  Engineering proteins for allosteric control by light or ligands.

Authors:  Onur Dagliyan; Nikolay V Dokholyan; Klaus M Hahn
Journal:  Nat Protoc       Date:  2019-05-10       Impact factor: 13.491

Review 5.  Biomolecular Systems Engineering: Unlocking the Potential of Engineered Allostery via the Lactose Repressor Topology.

Authors:  Thomas M Groseclose; Ronald E Rondon; Ashley N Hersey; Prasaad T Milner; Dowan Kim; Fumin Zhang; Matthew J Realff; Corey J Wilson
Journal:  Annu Rev Biophys       Date:  2021-02-19       Impact factor: 12.981

6.  Dynamic allosteric communication pathway directing differential activation of the glucocorticoid receptor.

Authors:  C Köhler; G Carlström; A Gunnarsson; U Weininger; S Tångefjord; V Ullah; M Lepistö; U Karlsson; T Papavoine; K Edman; M Akke
Journal:  Sci Adv       Date:  2020-07-17       Impact factor: 14.136

7.  Computational design of G Protein-Coupled Receptor allosteric signal transductions.

Authors:  Kuang-Yui Michael Chen; Daniel Keri; Patrick Barth
Journal:  Nat Chem Biol       Date:  2019-12-02       Impact factor: 15.040

Review 8.  Structural and energetic basis of allostery.

Authors:  Vincent J Hilser; James O Wrabl; Hesam N Motlagh
Journal:  Annu Rev Biophys       Date:  2012       Impact factor: 12.981

9.  Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics.

Authors:  Ioannis Galdadas; Shen Qu; Ana Sofia F Oliveira; Edgar Olehnovics; Andrew R Mack; Maria F Mojica; Pratul K Agarwal; Catherine L Tooke; Francesco Luigi Gervasio; James Spencer; Robert A Bonomo; Adrian J Mulholland; Shozeb Haider
Journal:  Elife       Date:  2021-03-23       Impact factor: 8.140

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  1 in total

1.  Ensemble origins and distance-dependence of long-range mutational effects in proteins.

Authors:  Adithi Kannan; Athi N Naganathan
Journal:  iScience       Date:  2022-09-22
  1 in total

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