| Literature DB >> 33951332 |
Lingshan Gou1, Feng Suo1, Yi Wang1, Na Wang2, Qin Wu3, Shunan Hu4, Peng Wang1, Lize Gu1, Man Zhang3, Chuanxia Wang1, Yan Zhang1, Xin Yin1, Peng Zhang5, Jian Xu5, Xingqi Wang6, Maosheng Gu1.
Abstract
OBJECTIVE: This study was to report the experiences on the clinical value of noninvasive prenatal testing (NIPT) for the screening of fetal chromosomal deletions/duplications.Entities:
Keywords: NIPT; chromosomal microarray analysis; deletion; duplication; fetus; prenatal diagnosis
Mesh:
Year: 2021 PMID: 33951332 PMCID: PMC8222853 DOI: 10.1002/mgg3.1687
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
NIPT results for chromosomal deletions/duplications validated by CMA and karyotpye analysis of amniocytes
| Sample ID | MA (Y) | GA (W) | Clinical indications | NIPT results | CMA/karyotype analysis results | Maternal sequencing results | Classification/follow up | |
|---|---|---|---|---|---|---|---|---|
| Location | Size (Mb) | |||||||
|
| ||||||||
| Case 1 | 29 | 16 | Intermediate risk | Dup 1q24.3q25.2 (7.35 Mb) | Dup 1q24.3q25.2 | 7.56 | ND | Pathogenic |
| Case 2 | 26 | 22 | NA | Del 4q12q21.23 (27.81 Mb) | Del 4q12q21.1 | 19.54 | Normal | Pathogenic |
| Case 3 | 22 | 23 | NA | Del 5p15.33p14.1 (27.30 Mb) | Del 5p15.33p13.3 | 30.74 | Normal | Pathogenic |
| Case 4 | 23 | 24 | NA | Del 15q11.2q13.1 (5.69 Mb) (15q11q13 recurrent region) | Del 15q11.2q13.1 | 5.20 | ND | Pathogenic |
| Case 5 | 30 | 19 | NA | Dup 17p11.2 (5.01 Mb) (17p11.2 recurrent region) | Dup 17p12p11.2 | 4.93 | Normal | Pathogenic |
| Case 6 | 29 | 19 | Intermediate risk | Dup 21q21.1q21.3 (10.08 Mb) | Dup 21q21.1q21.3 | 10.35 | ND | Pathogenic |
| Case 7 | 23 | 18 | High risk | Dup 22q11.21 (2.84 Mb) (22q11.2 recurrent region) | Dup 22q11.21 | 3.27 | Dup 22q11.21 (3.28 Mb) | Likely pathogenic |
| Case 8 | 19 | 17 | Fetal structural abnormality | Del 22q11.21 (3.20 Mb) (22q11.2 recurrent region) | Del 22q11.21 | 3.15 | Normal | Pathogenic |
| Case 9 | 37 | 19 | Advanced maternal age | Del 22q11.21 (1.88 Mb) (22q11.2 recurrent region) | Del 22q11.21 | 0.99 | Del(22)(22q11.21 (0.99 Mb) | Pathogenic |
|
| ||||||||
| Case 10 | 24 | 19 | Intermediate risk | Del 1p33p31.3 (18.30 Mb) | Normal | – | ND | NA |
| Case 11 | 40 | 19 | Advanced maternal age | Dup 1q31.2q32.2 (18.75 Mb); Del 5p15.33p14.1 (26.73 Mb) | Normal | – | ND | NA |
| Case 12 | 28 | 19 | NA | Dup 2p25.3p23.3 (25.71 Mb) | Normal | – | ND | NA |
| Case 13 | 35 | 21 | Advanced maternal age | Dup 2q32.3q33.2 (8.28 Mb) | Dup 2q31.2 | 0.52 | NA | Uncertain significance |
| Case 14 | 28 | 22 | NA | Del 2q33.1q33.3 (8.28 Mb) | Normal | – | ND | Normal liveborn |
| Case 15 | 23 | 18 | Intermediate risk | Dup 3q27.3q29 (10.90 Mb) (3q29 recurrent region) | Del 8p23.3 | 2.01 | ND | Pathogenic |
| Case 16 | 30 | 19 | Intermediate risk | Dup 4q12q13.2 (13.94 Mb) | Normal | – | ND | NA |
| Case 17 | 31 | 20 | NA | Dup 4q31.21q35.2 (46.57 Mb); Dup 16q21q24.3 (24.53 Mb) | Normal | – | ND | NA |
| Case 18 | 22 | 19 | NA | Del 4q28.3q31.21 (5.10 Mb) | Normal | – | ND | NA |
| Case 19 | 28 | 18 | Intermediate risk | Del 5p15.33p15.1 (16.33 Mb) | Normal | – | ND | Normal liveborn |
| Case 20 | 34 | 20 | Intermediate risk | Del 5p15.33p15.2 (10.28 Mb) | Dup Yq11.223 | 4.23 | ND | Uncertain significance |
| Case 21 | 33 | 16 | NA | Del 5p15.33p15.1 (16.02 Mb) | Normal | – | ND | Normal liveborn |
| Case 22 | 38 | 16 | Advanced maternal age | Del 5p15.33p14.1 (26.17 Mb) | Normal | – | ND | Normal liveborn |
| Case 23 | 20 | 17 | Intermediate risk | Del 5p15.33p14.1 (28.83 Mb) | Normal | – | ND | Normal liveborn |
| Case 24 | 28 | 20 | High risk | Del 5p15.33p14.3 (23.04 Mb) | Normal | – | ND | NA |
| Case 25 | 39 | 19 | NA | Del 5p15.33p15.2 (10.50 Mb; Dup 6p25.3p12.2 (50.32 Mb) | Normal | – | ND | NA |
| Case 26 | 25 | 23 | Intermediate risk | Dup 7q31.2q36.3 (41.86 Mb) | Normal | – | ND | Normal liveborn |
| Case 27 | 29 | 18 | Intermediate risk | Dup 8q24.13q24.3 (16.58 Mb) | Normal | – | ND | NA |
| Case 28 | 28 | 19 | NA | Dup 9p21.3p13.2 (15.26 Mb) | Normal | – | ND | NA |
| Case 29 | 32 | 17 | NA | Dup 9q12q21.3 (9.13 Mb) | Normal | – | ND | NA |
| Case 30 | 25 | 22 | Intermediate risk | Dup 15q24.3q26.1 (15.38 Mb) | Normal | – | ND | Normal liveborn |
| Case 31 | 26 | 18 | High risk | Del 15q11.2q13.1 (5.69 Mb) (15q11q13 recurrent region) | Normal | – | ND | Normal liveborn |
| Case 32 | 25 | 18 | NA | Del 15q11.2q13.1 (5.69 Mb) (15q11q13 recurrent region) | Normal | – | Normal | Normal liveborn |
| Case 33 | 24 | 19 | NA | Del 15q21.2q23 (18.34 Mb) | Normal | – | ND | NA |
| Case 34 | 36 | 17 | Advanced maternal age | Dup 16p13.12p12.3 (5.66 Mb) | Normal | – | ND | Normal liveborn |
| Case 35 | 31 | 21 | NA | Del 16q23.1q24.2 (11.13 Mb) | Normal | – | ND | NA |
| Case 36 | 37 | 17 | Advanced maternal age | Dup 18p11.32p11.31 (3.12 Mb) | Normal | – | ND | NA |
| Case 37 | 35 | 19 | Advanced maternal age | Dup 22q11.21 (2.94 Mb) (22q11.2 recurrent region) | Normal | – | Dup 22q11.21 (2.92 Mb) | Normal liveborn |
| Case 38 | 34 | 19 | NA | Del 22q11.21q11.3 (4.71 Mb) (22q11.2 recurrent region) | Normal | – | Normal | Normal liveborn |
| Case 39 | 26 | 18 | NA | Del 22q11.21q11.22 (4.71 Mb) (22q11.2 recurrent region) | Normal | – | ND | NA |
Abbreviations: CMA, chromosomal microarray analysis; CNVs, copy number variants; Del, deletion; Dup, duplication; GA, gestational age; MA, maternal age; NA, not available; ND, not detected; NIPT, noninvasive prenatal testing; W, week; Y, year.
Evaluation of the positive predictive value (PPV) of NIPT in detecting chromosomal deletions/duplications
| CNVs size | Positive cases | Cases undergoing amniocytes testing | TP cases | FP cases | PPV (%) |
|---|---|---|---|---|---|
| >10 Mb | 28 | 22 | 3 | 19 | 13.6 |
| 5−10 Mb | 15 | 10 | 3 | 7 | 30.0 |
| <5 Mb | 17 | 7 | 3 | 4 | 42.9 |
| Total | 60 | 39 | 9 | 30 | 23.1 |
Abbreviations: CNVs, copy number variants; FP, false positive; PPV, positive predictive value; TP, true positive.