Literature DB >> 33947812

Microswimmers learning chemotaxis with genetic algorithms.

Benedikt Hartl1, Maximilian Hübl1, Gerhard Kahl1, Andreas Zöttl2.   

Abstract

Various microorganisms and some mammalian cells are able to swim in viscous fluids by performing nonreciprocal body deformations, such as rotating attached flagella or by distorting their entire body. In order to perform chemotaxis (i.e., to move toward and to stay at high concentrations of nutrients), they adapt their swimming gaits in a nontrivial manner. Here, we propose a computational model, which features autonomous shape adaptation of microswimmers moving in one dimension toward high field concentrations. As an internal decision-making machinery, we use artificial neural networks, which control the motion of the microswimmer. We present two methods to measure chemical gradients, spatial and temporal sensing, as known for swimming mammalian cells and bacteria, respectively. Using the genetic algorithm NeuroEvolution of Augmenting Topologies, surprisingly simple neural networks evolve. These networks control the shape deformations of the microswimmers and allow them to navigate in static and complex time-dependent chemical environments. By introducing noisy signal transmission in the neural network, the well-known biased run-and-tumble motion emerges. Our work demonstrates that the evolution of a simple and interpretable internal decision-making machinery coupled to the environment allows navigation in diverse chemical landscapes. These findings are of relevance for intracellular biochemical sensing mechanisms of single cells or for the simple nervous system of small multicellular organisms such as Caenorhabditis elegans.

Entities:  

Keywords:  chemotaxis; genetic algorithm; low-Reynolds number swimming; machine learning; neural network

Mesh:

Year:  2021        PMID: 33947812      PMCID: PMC8126864          DOI: 10.1073/pnas.2019683118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

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Authors:  Eyal Itskovits; Rotem Ruach; Alon Zaslaver
Journal:  Nat Commun       Date:  2018-07-20       Impact factor: 14.919

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