Literature DB >> 33937840

Improved Segmentation and Detection Sensitivity of Diffusion-weighted Stroke Lesions with Synthetically Enhanced Deep Learning.

Christian Federau1, Soren Christensen1, Nino Scherrer1, Johanna M Ospel1, Victor Schulze-Zachau1, Noemi Schmidt1, Hanns-Christian Breit1, Julian Maclaren1, Maarten Lansberg1, Sebastian Kozerke1.   

Abstract

PURPOSE: To compare the segmentation and detection performance of a deep learning model trained on a database of human-labeled clinical stroke lesions on diffusion-weighted (DW) images to a model trained on the same database enhanced with synthetic stroke lesions.
MATERIALS AND METHODS: In this institutional review board-approved study, a stroke database of 962 cases (mean patient age ± standard deviation, 65 years ± 17; 255 male patients; 449 scans with DW positive stroke lesions) and a normal database of 2027 patients (mean age, 38 years ± 24; 1088 female patients) were used. Brain volumes with synthetic stroke lesions on DW images were produced by warping the relative signal increase of real strokes to normal brain volumes. A generic three-dimensional (3D) U-Net was trained on four different databases to generate four different models: (a) 375 neuroradiologist-labeled clinical DW positive stroke cases (CDB); (b) 2000 synthetic cases (S2DB); (c) CDB plus 2000 synthetic cases (CS2DB); and (d) CDB plus 40 000 synthetic cases (CS40DB). The models were tested on 20% (n = 192) of the cases of the stroke database, which were excluded from the training set. Segmentation accuracy was characterized using Dice score and lesion volume of the stroke segmentation, and statistical significance was tested using a paired two-tailed Student t test. Detection sensitivity and specificity were compared with labeling done by three neuroradiologists.
RESULTS: The performance of the 3D U-Net model trained on the CS40DB (mean Dice score, 0.72) was better than models trained on the CS2DB (Dice score, 0.70; P < .001) or the CDB (Dice score, 0.65; P < .001). The deep learning model (CS40DB) was also more sensitive (91% [95% confidence interval {CI}: 89%, 93%]) than each of the three human readers (human reader 3, 84% [95% CI: 81%, 87%]; human reader 1, 78% [95% CI: 75%, 81%]; human reader 2, 79% [95% CI: 76%, 82%]), but was less specific (75% [95% CI: 72%, 78%]) than each of the three human readers (human reader 3, 96% [95% CI: 94%, 98%]; human reader 1, 92% [95% CI: 90%, 94%]; human reader 2, 89% [95% CI: 86%, 91%]).
CONCLUSION: Deep learning training for segmentation and detection of stroke lesions on DW images was significantly improved by enhancing the training set with synthetic lesions.Supplemental material is available for this article.© RSNA, 2020. 2020 by the Radiological Society of North America, Inc.

Entities:  

Year:  2020        PMID: 33937840      PMCID: PMC8082335          DOI: 10.1148/ryai.2020190217

Source DB:  PubMed          Journal:  Radiol Artif Intell        ISSN: 2638-6100


  13 in total

1.  Big Data Approaches to Phenotyping Acute Ischemic Stroke Using Automated Lesion Segmentation of Multi-Center Magnetic Resonance Imaging Data.

Authors:  Ona Wu; Stefan Winzeck; Anne-Katrin Giese; Brandon L Hancock; Mark R Etherton; Mark J R J Bouts; Kathleen Donahue; Markus D Schirmer; Robert E Irie; Steven J T Mocking; Elissa C McIntosh; Raquel Bezerra; Konstantinos Kamnitsas; Petrea Frid; Johan Wasselius; John W Cole; Huichun Xu; Lukas Holmegaard; Jordi Jiménez-Conde; Robin Lemmens; Eric Lorentzen; Patrick F McArdle; James F Meschia; Jaume Roquer; Tatjana Rundek; Ralph L Sacco; Reinhold Schmidt; Pankaj Sharma; Agnieszka Slowik; Tara M Stanne; Vincent Thijs; Achala Vagal; Daniel Woo; Stephen Bevan; Steven J Kittner; Braxton D Mitchell; Jonathan Rosand; Bradford B Worrall; Christina Jern; Arne G Lindgren; Jane Maguire; Natalia S Rost
Journal:  Stroke       Date:  2019-06-10       Impact factor: 7.914

2.  Dermatologist-level classification of skin cancer with deep neural networks.

Authors:  Andre Esteva; Brett Kuprel; Roberto A Novoa; Justin Ko; Susan M Swetter; Helen M Blau; Sebastian Thrun
Journal:  Nature       Date:  2017-01-25       Impact factor: 49.962

3.  Time to Treatment With Endovascular Thrombectomy and Outcomes From Ischemic Stroke: A Meta-analysis.

Authors:  Jeffrey L Saver; Mayank Goyal; Aad van der Lugt; Bijoy K Menon; Charles B L M Majoie; Diederik W Dippel; Bruce C Campbell; Raul G Nogueira; Andrew M Demchuk; Alejandro Tomasello; Pere Cardona; Thomas G Devlin; Donald F Frei; Richard du Mesnil de Rochemont; Olvert A Berkhemer; Tudor G Jovin; Adnan H Siddiqui; Wim H van Zwam; Stephen M Davis; Carlos Castaño; Biggya L Sapkota; Puck S Fransen; Carlos Molina; Robert J van Oostenbrugge; Ángel Chamorro; Hester Lingsma; Frank L Silver; Geoffrey A Donnan; Ashfaq Shuaib; Scott Brown; Bruce Stouch; Peter J Mitchell; Antoni Davalos; Yvo B W E M Roos; Michael D Hill
Journal:  JAMA       Date:  2016-09-27       Impact factor: 56.272

4.  Time From Imaging to Endovascular Reperfusion Predicts Outcome in Acute Stroke.

Authors:  Jenny P Tsai; Michael Mlynash; Soren Christensen; Stephanie Kemp; Sun Kim; Nishant K Mishra; Christian Federau; Raul G Nogueira; Tudor G Jovin; Thomas G Devlin; Naveed Akhtar; Dileep R Yavagal; Roland Bammer; Matus Straka; Gregory Zaharchuk; Michael P Marks; Gregory W Albers; Maarten G Lansberg
Journal:  Stroke       Date:  2018-03-16       Impact factor: 7.914

5.  Automatic Segmentation of Acute Ischemic Stroke From DWI Using 3-D Fully Convolutional DenseNets.

Authors:  Rongzhao Zhang; Lei Zhao; Wutao Lou; Jill M Abrigo; Vincent C T Mok; Winnie C W Chu; Defeng Wang; Lin Shi
Journal:  IEEE Trans Med Imaging       Date:  2018-03-30       Impact factor: 10.048

6.  Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation.

Authors:  Konstantinos Kamnitsas; Christian Ledig; Virginia F J Newcombe; Joanna P Simpson; Andrew D Kane; David K Menon; Daniel Rueckert; Ben Glocker
Journal:  Med Image Anal       Date:  2016-10-29       Impact factor: 8.545

7.  ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI.

Authors:  Bjoern H Menze; Heinz Handels; Mauricio Reyes; Oskar Maier; Janina von der Gablentz; Levin Ḧani; Mattias P Heinrich; Matthias Liebrand; Stefan Winzeck; Abdul Basit; Paul Bentley; Liang Chen; Daan Christiaens; Francis Dutil; Karl Egger; Chaolu Feng; Ben Glocker; Michael Götz; Tom Haeck; Hanna-Leena Halme; Mohammad Havaei; Khan M Iftekharuddin; Pierre-Marc Jodoin; Konstantinos Kamnitsas; Elias Kellner; Antti Korvenoja; Hugo Larochelle; Christian Ledig; Jia-Hong Lee; Frederik Maes; Qaiser Mahmood; Klaus H Maier-Hein; Richard McKinley; John Muschelli; Chris Pal; Linmin Pei; Janaki Raman Rangarajan; Syed M S Reza; David Robben; Daniel Rueckert; Eero Salli; Paul Suetens; Ching-Wei Wang; Matthias Wilms; Jan S Kirschke; Ulrike M Kr Amer; Thomas F Münte; Peter Schramm; Roland Wiest
Journal:  Med Image Anal       Date:  2016-07-21       Impact factor: 8.545

8.  Fully automatic acute ischemic lesion segmentation in DWI using convolutional neural networks.

Authors:  Liang Chen; Paul Bentley; Daniel Rueckert
Journal:  Neuroimage Clin       Date:  2017-06-13       Impact factor: 4.881

9.  Data augmentation using generative adversarial networks (CycleGAN) to improve generalizability in CT segmentation tasks.

Authors:  Veit Sandfort; Ke Yan; Perry J Pickhardt; Ronald M Summers
Journal:  Sci Rep       Date:  2019-11-15       Impact factor: 4.379

10.  The Bright, Artificial Intelligence-Augmented Future of Neuroimaging Reading.

Authors:  Nicolin Hainc; Christian Federau; Bram Stieltjes; Maria Blatow; Andrea Bink; Christoph Stippich
Journal:  Front Neurol       Date:  2017-09-21       Impact factor: 4.003

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  3 in total

1.  Editorial: Machine Learning in Neuroimaging.

Authors:  Christian Federau; Fabien Scalzo; Christopher William Lee-Messer; Greg Zaharchuk
Journal:  Front Neurol       Date:  2021-11-24       Impact factor: 4.003

2.  Development and clinical application of a deep learning model to identify acute infarct on magnetic resonance imaging.

Authors:  Christopher P Bridge; Bernardo C Bizzo; James M Hillis; John K Chin; Donnella S Comeau; Romane Gauriau; Fabiola Macruz; Jayashri Pawar; Flavia T C Noro; Elshaimaa Sharaf; Marcelo Straus Takahashi; Bradley Wright; John F Kalafut; Katherine P Andriole; Stuart R Pomerantz; Stefano Pedemonte; R Gilberto González
Journal:  Sci Rep       Date:  2022-02-09       Impact factor: 4.379

3.  Optimizing Deep Learning Algorithms for Segmentation of Acute Infarcts on Non-Contrast Material-enhanced CT Scans of the Brain Using Simulated Lesions.

Authors:  Søren Christensen; Michael Mlynash; Julian MacLaren; Christian Federau; Gregory W Albers; Maarten G Lansberg
Journal:  Radiol Artif Intell       Date:  2021-05-12
  3 in total

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