Literature DB >> 33937818

Labeling Vertebrae with Two-dimensional Reformations of Multidetector CT Images: An Adversarial Approach for Incorporating Prior Knowledge of Spine Anatomy.

Anjany Sekuboyina1, Markus Rempfler1, Alexander Valentinitsch1, Bjoern H Menze1, Jan S Kirschke1.   

Abstract

PURPOSE: To use and test a labeling algorithm that operates on two-dimensional reformations, rather than three-dimensional data to locate and identify vertebrae.
MATERIALS AND METHODS: The authors improved the Btrfly Net, a fully convolutional network architecture described by Sekuboyina et al, which works on sagittal and coronal maximum intensity projections (MIPs) and augmented it with two additional components: spine localization and adversarial a priori learning. Furthermore, two variants of adversarial training schemes that incorporated the anatomic a priori knowledge into the Btrfly Net were explored. The superiority of the proposed approach for labeling vertebrae on three datasets was investigated: a public benchmarking dataset of 302 CT scans and two in-house datasets with a total of 238 CT scans. The Wilcoxon signed rank test was employed to compute the statistical significance of the improvement in performance observed with various architectural components in the authors' approach.
RESULTS: On the public dataset, the authors' approach using the described Btrfly Net with energy-based prior encoding (Btrflype-eb) network performed as well as current state-of-the-art methods, achieving a statistically significant (P < .001) vertebrae identification rate of 88.5% ± 0.2 (standard deviation) and localization distances of less than 7 mm. On the in-house datasets that had a higher interscan data variability, an identification rate of 85.1% ± 1.2 was obtained.
CONCLUSION: An identification performance comparable to existing three-dimensional approaches was achieved when labeling vertebrae on two-dimensional MIPs. The performance was further improved using the proposed adversarial training regimen that effectively enforced local spine a priori knowledge during training. Spine localization increased the generalizability of our approach by homogenizing the content in the MIPs.Supplemental material is available for this article.© RSNA, 2020. 2020 by the Radiological Society of North America, Inc.

Entities:  

Year:  2020        PMID: 33937818      PMCID: PMC8017405          DOI: 10.1148/ryai.2020190074

Source DB:  PubMed          Journal:  Radiol Artif Intell        ISSN: 2638-6100


  9 in total

1.  Regional analysis of age-related local bone loss in the spine of a healthy population using 3D voxel-based modeling.

Authors:  Alexander Valentinitsch; Stefano Trebeschi; Eva Alarcón; Thomas Baum; Johannes Kaesmacher; Claus Zimmer; Cristian Lorenz; Jan S Kirschke
Journal:  Bone       Date:  2017-07-14       Impact factor: 4.398

2.  Hierarchical segmentation and identification of thoracic vertebra using learning-based edge detection and coarse-to-fine deformable model.

Authors:  Jun Ma; Le Lu; Yiqiang Zhan; Xiang Zhou; Marcos Salganicoff; Arun Krishnan
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

3.  Spine detection and labeling using a parts-based graphical model.

Authors:  Stefan Schmidt; Jörg Kappes; Martin Bergtholdt; Vladimir Pekar; Sebastian Dries; Daniel Bystrov; Christoph Schnörr
Journal:  Inf Process Med Imaging       Date:  2007

4.  Automated model-based vertebra detection, identification, and segmentation in CT images.

Authors:  Tobias Klinder; Jörn Ostermann; Matthias Ehm; Astrid Franz; Reinhard Kneser; Cristian Lorenz
Journal:  Med Image Anal       Date:  2009-02-20       Impact factor: 8.545

5.  Automatic localization and identification of vertebrae in arbitrary field-of-view CT scans.

Authors:  Ben Glocker; J Feulner; Antonio Criminisi; D R Haynor; E Konukoglu
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

6.  Vertebrae localization in pathological spine CT via dense classification from sparse annotations.

Authors:  Ben Glocker; Darko Zikic; Ender Konukoglu; David R Haynor; Antonio Criminisi
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

7.  Anatomically Constrained Neural Networks (ACNNs): Application to Cardiac Image Enhancement and Segmentation.

Authors:  Ozan Oktay; Enzo Ferrante; Konstantinos Kamnitsas; Mattias Heinrich; Wenjia Bai; Jose Caballero; Stuart A Cook; Antonio de Marvao; Timothy Dawes; Declan P O'Regan; Bernhard Kainz; Ben Glocker; Daniel Rueckert
Journal:  IEEE Trans Med Imaging       Date:  2017-09-26       Impact factor: 10.048

8.  Joint Vertebrae Identification and Localization in Spinal CT Images by Combining Short- and Long-Range Contextual Information.

Authors:  Haofu Liao; Addisu Mesfin; Jiebo Luo
Journal:  IEEE Trans Med Imaging       Date:  2018-05       Impact factor: 10.048

9.  Opportunistic osteoporosis screening in multi-detector CT images via local classification of textures.

Authors:  A Valentinitsch; S Trebeschi; J Kaesmacher; C Lorenz; M T Löffler; C Zimmer; T Baum; J S Kirschke
Journal:  Osteoporos Int       Date:  2019-03-04       Impact factor: 4.507

  9 in total
  5 in total

1.  A computed tomography vertebral segmentation dataset with anatomical variations and multi-vendor scanner data.

Authors:  Hans Liebl; David Schinz; Anjany Sekuboyina; Luca Malagutti; Maximilian T Löffler; Amirhossein Bayat; Malek El Husseini; Giles Tetteh; Katharina Grau; Eva Niederreiter; Thomas Baum; Benedikt Wiestler; Bjoern Menze; Rickmer Braren; Claus Zimmer; Jan S Kirschke
Journal:  Sci Data       Date:  2021-10-28       Impact factor: 6.444

2.  Anatomy-Aware Inference of the 3D Standing Spine Posture from 2D Radiographs.

Authors:  Amirhossein Bayat; Danielle F Pace; Anjany Sekuboyina; Christian Payer; Darko Stern; Martin Urschler; Jan S Kirschke; Bjoern H Menze
Journal:  Tomography       Date:  2022-02-11

3.  Automated detection of the contrast phase in MDCT by an artificial neural network improves the accuracy of opportunistic bone mineral density measurements.

Authors:  Sebastian Rühling; Fernando Navarro; Anjany Sekuboyina; Malek El Husseini; Thomas Baum; Bjoern Menze; Rickmer Braren; Claus Zimmer; Jan S Kirschke
Journal:  Eur Radiol       Date:  2021-10-23       Impact factor: 5.315

4.  Proposed diagnostic volumetric bone mineral density thresholds for osteoporosis and osteopenia at the cervicothoracic spine in correlation to the lumbar spine.

Authors:  Sebastian Rühling; Andreas Scharr; Nico Sollmann; Maria Wostrack; Maximilian T Löffler; Bjoern Menze; Anjany Sekuboyina; Malek El Husseini; Rickmer Braren; Claus Zimmer; Jan S Kirschke
Journal:  Eur Radiol       Date:  2022-04-06       Impact factor: 7.034

5.  Detection of Degenerative Changes on MR Images of the Lumbar Spine with a Convolutional Neural Network: A Feasibility Study.

Authors:  Nils Christian Lehnen; Robert Haase; Jennifer Faber; Theodor Rüber; Hartmut Vatter; Alexander Radbruch; Frederic Carsten Schmeel
Journal:  Diagnostics (Basel)       Date:  2021-05-19
  5 in total

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