| Literature DB >> 33936758 |
Ashwini Gumireddy1, Kevin DeBoyace1, Alexander Rupprecht2, Mohit Gupta1, Saloni Patel1, Patrick T Flaherty1, Peter L D Wildfong1.
Abstract
The title sterically congested piperazine derivative, C20H27FN2O2, was prepared using a modified Bruylants approach. A search of the Cambridge Structural Database identified 51 compounds possessing an N-tert-butyl piperazine substructure. Of these only 14 were asymmetrically substituted on the piperazine ring and none with a synthetically useful second nitro-gen. Given the novel chemistry generating a pharmacologically useful core, determination of the crystal structure for this compound was necessary. The piperazine ring is present in a chair conformation with di-equatorial substitution. Of the two N atoms, one is sp 3 hybridized while the other is sp 2 hybridized. Inter-molecular inter-actions resulting from the crystal packing patterns were investigated using Hirshfeld surface analysis and fingerprint analysis. Directional weak hydrogen-bond-like inter-actions (C-H⋯O) and C-H⋯π inter-actions with the dispersion inter-actions as the major source of attraction are present in the crystal packing. © Gumireddy et al. 2021.Entities:
Keywords: crystal structure; propargylamine; quaternary carbons
Year: 2021 PMID: 33936758 PMCID: PMC8025862 DOI: 10.1107/S2056989021002346
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Synthesis of tert-butyl 4-[4-(4-fluorophenyl)-2-methylbut-3-yn-2-yl]piperazine-1-carboxylate (1) via Bruylants reaction (Firth et al., 2016 ▸).
Figure 230% probability ellipsoid plot for the crystal structure solution of tert-butyl 4-[4-(4-fluorophenyl)-2-methylbut-3-yn-2-yl]piperazine-1-carboxylate. Hydrogen atoms are omitted for clarity.
Selected geometric parameters (Å, °)
| F1—C1 | 1.359 (3) | N2—C16 | 1.336 (3) |
| O1—C16 | 1.211 (3) | C1—C6 | 1.351 (4) |
| O2—C16 | 1.345 (3) | C7⋯N1 | 3.508 (3) |
| C12—N1—C14 | 108.36 (16) | C16—N2—C13 | 120.9 (2) |
| C12—N1—C9 | 113.89 (18) | C15—N2—C13 | 112.8 (2) |
| C14—N1—C9 | 113.48 (16) | N1—C12—C13 | 110.77 (19) |
| C16—N2—C15 | 126.30 (19) | N2—C15—C14 | 110.1 (2) |
Figure 340% probability plot of the molecular crystal structure solution of tert-butyl 4-[4-(4-fluorophenyl)-2-methylbut-3-yn-2-yl]piperazine-1-carboxylate showing the l-shaped structure and the chair conformation of the piperazine ring.
Figure 430% probability plot of crystal packing of tert-butyl 4-[4-(4-fluorophenyl)-2-methylbut-3-yn-2-yl]piperazine-1-carboxylate viewed down the a axis showing weak hydrogen-bond-like interactions between C2—H2⋯O1 and C—H⋯π interactions between C19—H19⋯C1 due to dispersion interactions. Hydrogen atoms not involved in intermolecular interactions are omitted for clarity.
Figure 5Hirshfeld surface for tert-butyl 4-[4-(4-fluorophenyl)-2-methylbut-3-yn-2-yl]piperazine-1-carboxylate mapped over d norm showing weak hydrogen-bond-like interactions between C2—H2⋯O1 and C—H⋯π interactions between C19—H19⋯C1.
Figure 6The two-dimensional fingerprint plots of tert-butyl 4-[4-(4-fluorophenyl)-2-methylbut-3-yn-2-yl]piperazine-1-carboxylate showing contributions from different contacts.
Short interatomic contact distances (Å)
| Contact | Distance |
|---|---|
| C2—H2⋯O1 | 2.595 |
| C19—H19⋯C1 | 2.804 |
| C19—H19⋯F1 | 3.163 |
Experimental details
| Crystal data | |
| Chemical formula | C20H27FN2O2 |
|
| 346.43 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 10.2576 (11), 9.5127 (10), 10.5318 (11) |
| β (°) | 104.691 (2) |
|
| 994.07 (18) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.08 |
| Crystal size (mm) | 0.65 × 0.50 × 0.17 |
| Data collection | |
| Diffractometer | Bruker SMART APEXII |
| Absorption correction | Multi-scan ( |
|
| 0.704, 0.746 |
| No. of measured, independent and observed [ | 10640, 5058, 3662 |
|
| 0.017 |
| (sin θ/λ)max (Å−1) | 0.675 |
| Refinement | |
|
| 0.040, 0.109, 1.04 |
| No. of reflections | 5058 |
| No. of parameters | 231 |
| No. of restraints | 1 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.12, −0.11 |
Computer programs: SMART and SAINT (Bruker, 1998 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2018/3 (Sheldrick, 2015 ▸) and CrystalMaker (Palmer, 2014 ▸).
| C20H27FN2O2 | |
| Monoclinic, | Mo |
| Cell parameters from 3739 reflections | |
| θ = 2.9–23.9° | |
| µ = 0.08 mm−1 | |
| β = 104.691 (2)° | |
| Plate, colorless | |
| 0.65 × 0.50 × 0.17 mm |
| Bruker SMART APEXII diffractometer | 3662 reflections with |
| φ and ω Scans scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2002) | θmax = 28.7°, θmin = 2.0° |
| 10640 measured reflections | |
| 5058 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5058 reflections | (Δ/σ)max < 0.001 |
| 231 parameters | Δρmax = 0.12 e Å−3 |
| 1 restraint | Δρmin = −0.11 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| F1 | 1.18988 (19) | 0.1239 (2) | −0.11543 (15) | 0.1037 (6) | |
| O1 | 0.36605 (17) | 0.51912 (19) | 0.18415 (19) | 0.0806 (5) | |
| O2 | 0.51029 (17) | 0.70053 (17) | 0.25327 (19) | 0.0744 (5) | |
| N1 | 0.75069 (16) | 0.3139 (2) | 0.49328 (17) | 0.0532 (4) | |
| N2 | 0.54352 (19) | 0.4993 (2) | 0.3602 (3) | 0.0786 (7) | |
| C1 | 1.1321 (3) | 0.1417 (3) | −0.0138 (2) | 0.0675 (6) | |
| C2 | 1.1908 (2) | 0.2311 (3) | 0.0845 (2) | 0.0657 (6) | |
| H2 | 1.267513 | 0.281757 | 0.081485 | 0.079* | |
| C3 | 1.1337 (2) | 0.2446 (3) | 0.1888 (2) | 0.0607 (5) | |
| H3 | 1.173183 | 0.304622 | 0.257504 | 0.073* | |
| C4 | 1.0186 (2) | 0.1709 (2) | 0.1937 (2) | 0.0551 (5) | |
| C5 | 0.9617 (3) | 0.0830 (3) | 0.0901 (3) | 0.0760 (7) | |
| H5 | 0.884011 | 0.032892 | 0.090838 | 0.091* | |
| C6 | 1.0188 (3) | 0.0687 (4) | −0.0148 (3) | 0.0830 (8) | |
| H6 | 0.980055 | 0.010008 | −0.084752 | 0.100* | |
| C7 | 0.9619 (2) | 0.1869 (3) | 0.3042 (2) | 0.0623 (5) | |
| C8 | 0.9197 (2) | 0.1996 (3) | 0.3994 (2) | 0.0614 (5) | |
| C9 | 0.8686 (2) | 0.2172 (3) | 0.5184 (2) | 0.0594 (5) | |
| C10 | 0.8289 (3) | 0.0738 (3) | 0.5623 (3) | 0.0761 (7) | |
| H10A | 0.907916 | 0.016550 | 0.591129 | 0.114* | |
| H10B | 0.766913 | 0.028670 | 0.490045 | 0.114* | |
| H10C | 0.786779 | 0.086116 | 0.633205 | 0.114* | |
| C11 | 0.9824 (3) | 0.2766 (3) | 0.6290 (2) | 0.0766 (7) | |
| H11A | 1.053887 | 0.208928 | 0.652455 | 0.115* | |
| H11B | 0.948419 | 0.296461 | 0.704074 | 0.115* | |
| H11C | 1.016014 | 0.361555 | 0.599756 | 0.115* | |
| C12 | 0.6330 (2) | 0.2618 (2) | 0.3960 (3) | 0.0623 (5) | |
| H12A | 0.612475 | 0.167143 | 0.419119 | 0.075* | |
| H12B | 0.652638 | 0.258352 | 0.310685 | 0.075* | |
| C13 | 0.5133 (2) | 0.3551 (2) | 0.3890 (3) | 0.0758 (7) | |
| H13A | 0.437271 | 0.321130 | 0.321152 | 0.091* | |
| H13B | 0.488758 | 0.352041 | 0.472069 | 0.091* | |
| C14 | 0.7810 (2) | 0.4556 (2) | 0.4548 (2) | 0.0629 (6) | |
| H14A | 0.799613 | 0.452268 | 0.369024 | 0.075* | |
| H14B | 0.860821 | 0.490898 | 0.517127 | 0.075* | |
| C15 | 0.6649 (2) | 0.5530 (3) | 0.4505 (3) | 0.0753 (7) | |
| H15A | 0.650242 | 0.561673 | 0.537584 | 0.090* | |
| H15B | 0.685611 | 0.645571 | 0.422237 | 0.090* | |
| C16 | 0.4649 (2) | 0.5686 (2) | 0.2590 (2) | 0.0613 (5) | |
| C17 | 0.4383 (3) | 0.8005 (3) | 0.1535 (2) | 0.0719 (6) | |
| C18 | 0.4377 (4) | 0.7509 (5) | 0.0174 (3) | 0.1233 (14) | |
| H18A | 0.411731 | 0.827031 | −0.043585 | 0.185* | |
| H18B | 0.374709 | 0.674936 | −0.007262 | 0.185* | |
| H18C | 0.526238 | 0.719043 | 0.016399 | 0.185* | |
| C19 | 0.2976 (3) | 0.8232 (4) | 0.1690 (3) | 0.0933 (9) | |
| H19A | 0.255882 | 0.899276 | 0.113429 | 0.140* | |
| H19B | 0.301797 | 0.845773 | 0.258749 | 0.140* | |
| H19C | 0.245633 | 0.739092 | 0.144516 | 0.140* | |
| C20 | 0.5234 (5) | 0.9306 (4) | 0.1912 (4) | 0.1246 (14) | |
| H20A | 0.487111 | 1.005437 | 0.131485 | 0.187* | |
| H20B | 0.614143 | 0.911229 | 0.187209 | 0.187* | |
| H20C | 0.523167 | 0.958052 | 0.278851 | 0.187* |
| F1 | 0.1100 (12) | 0.1444 (17) | 0.0629 (8) | 0.0197 (12) | 0.0335 (8) | −0.0031 (9) |
| O1 | 0.0619 (9) | 0.0604 (10) | 0.1066 (13) | −0.0065 (8) | −0.0025 (9) | 0.0007 (9) |
| O2 | 0.0717 (10) | 0.0445 (8) | 0.0986 (12) | −0.0040 (8) | 0.0064 (9) | 0.0062 (8) |
| N1 | 0.0502 (9) | 0.0478 (9) | 0.0611 (9) | 0.0025 (7) | 0.0132 (7) | 0.0059 (8) |
| N2 | 0.0513 (10) | 0.0470 (11) | 0.1223 (17) | −0.0065 (8) | −0.0061 (11) | 0.0149 (11) |
| C1 | 0.0731 (15) | 0.0785 (16) | 0.0515 (12) | 0.0157 (13) | 0.0170 (11) | 0.0065 (11) |
| C2 | 0.0561 (12) | 0.0724 (16) | 0.0695 (14) | 0.0003 (11) | 0.0173 (11) | −0.0018 (12) |
| C3 | 0.0586 (12) | 0.0612 (13) | 0.0615 (13) | 0.0023 (10) | 0.0136 (10) | −0.0077 (10) |
| C4 | 0.0534 (11) | 0.0551 (12) | 0.0558 (11) | 0.0101 (9) | 0.0119 (9) | 0.0081 (9) |
| C5 | 0.0692 (14) | 0.0772 (17) | 0.0781 (16) | −0.0132 (13) | 0.0125 (12) | −0.0043 (13) |
| C6 | 0.0916 (19) | 0.0891 (19) | 0.0612 (14) | −0.0063 (16) | 0.0063 (13) | −0.0167 (13) |
| C7 | 0.0591 (12) | 0.0619 (13) | 0.0654 (13) | 0.0095 (10) | 0.0151 (10) | 0.0103 (10) |
| C8 | 0.0592 (12) | 0.0600 (13) | 0.0664 (13) | 0.0088 (10) | 0.0181 (10) | 0.0108 (11) |
| C9 | 0.0569 (11) | 0.0610 (13) | 0.0618 (12) | 0.0105 (10) | 0.0176 (9) | 0.0125 (10) |
| C10 | 0.0811 (16) | 0.0624 (15) | 0.0913 (18) | 0.0187 (13) | 0.0337 (14) | 0.0265 (13) |
| C11 | 0.0660 (14) | 0.095 (2) | 0.0641 (14) | 0.0166 (13) | 0.0075 (11) | 0.0112 (13) |
| C12 | 0.0601 (12) | 0.0428 (10) | 0.0788 (14) | −0.0063 (9) | 0.0080 (10) | 0.0050 (10) |
| C13 | 0.0522 (12) | 0.0513 (14) | 0.115 (2) | −0.0074 (10) | 0.0041 (13) | 0.0170 (13) |
| C14 | 0.0513 (11) | 0.0507 (12) | 0.0793 (14) | −0.0079 (9) | 0.0028 (10) | 0.0037 (11) |
| C15 | 0.0606 (13) | 0.0452 (12) | 0.1076 (19) | −0.0031 (10) | −0.0019 (13) | −0.0023 (12) |
| C16 | 0.0480 (11) | 0.0445 (11) | 0.0910 (16) | 0.0004 (9) | 0.0165 (11) | −0.0030 (11) |
| C17 | 0.0970 (17) | 0.0551 (13) | 0.0653 (13) | 0.0022 (13) | 0.0237 (12) | 0.0101 (11) |
| C18 | 0.165 (4) | 0.137 (3) | 0.084 (2) | −0.021 (3) | 0.063 (2) | −0.012 (2) |
| C19 | 0.103 (2) | 0.0772 (18) | 0.098 (2) | 0.0310 (18) | 0.0233 (17) | 0.0133 (16) |
| C20 | 0.168 (4) | 0.0650 (19) | 0.130 (3) | −0.031 (2) | 0.018 (3) | 0.0250 (19) |
| F1—C1 | 1.359 (3) | C10—H10C | 0.9600 |
| O1—C16 | 1.211 (3) | C11—H11A | 0.9600 |
| O2—C16 | 1.345 (3) | C11—H11B | 0.9600 |
| O2—C17 | 1.470 (3) | C11—H11C | 0.9600 |
| N1—C12 | 1.457 (3) | C12—C13 | 1.502 (3) |
| N1—C14 | 1.463 (3) | C12—H12A | 0.9700 |
| N1—C9 | 1.489 (3) | C12—H12B | 0.9700 |
| N2—C16 | 1.336 (3) | C13—H13A | 0.9700 |
| N2—C15 | 1.454 (3) | C13—H13B | 0.9700 |
| N2—C13 | 1.456 (3) | C14—C15 | 1.501 (4) |
| C1—C6 | 1.351 (4) | C14—H14A | 0.9700 |
| C1—C2 | 1.357 (4) | C14—H14B | 0.9700 |
| C2—C3 | 1.376 (3) | C15—H15A | 0.9700 |
| C2—H2 | 0.9300 | C15—H15B | 0.9700 |
| C3—C4 | 1.385 (3) | C17—C18 | 1.508 (4) |
| C3—H3 | 0.9300 | C17—C19 | 1.508 (4) |
| C4—C5 | 1.381 (3) | C17—C20 | 1.509 (4) |
| C4—C7 | 1.434 (3) | C18—H18A | 0.9600 |
| C5—C6 | 1.382 (4) | C18—H18B | 0.9600 |
| C5—H5 | 0.9300 | C18—H18C | 0.9600 |
| C6—H6 | 0.9300 | C19—H19A | 0.9600 |
| C7—C8 | 1.195 (3) | C19—H19B | 0.9600 |
| C8—C9 | 1.486 (3) | C19—H19C | 0.9600 |
| C9—C10 | 1.528 (4) | C20—H20A | 0.9600 |
| C9—C11 | 1.532 (3) | C20—H20B | 0.9600 |
| C10—H10A | 0.9600 | C20—H20C | 0.9600 |
| C10—H10B | 0.9600 | ||
| C16—O2—C17 | 121.26 (19) | N1—C12—H12B | 109.5 |
| C12—N1—C14 | 108.36 (16) | C13—C12—H12B | 109.5 |
| C12—N1—C9 | 113.89 (18) | H12A—C12—H12B | 108.1 |
| C14—N1—C9 | 113.48 (16) | N2—C13—C12 | 110.6 (2) |
| C16—N2—C15 | 126.30 (19) | N2—C13—H13A | 109.5 |
| C16—N2—C13 | 120.9 (2) | C12—C13—H13A | 109.5 |
| C15—N2—C13 | 112.8 (2) | N2—C13—H13B | 109.5 |
| C6—C1—C2 | 122.8 (2) | C12—C13—H13B | 109.5 |
| C6—C1—F1 | 118.4 (2) | H13A—C13—H13B | 108.1 |
| C2—C1—F1 | 118.8 (2) | N1—C14—C15 | 110.74 (18) |
| C1—C2—C3 | 118.1 (2) | N1—C14—H14A | 109.5 |
| C1—C2—H2 | 120.9 | C15—C14—H14A | 109.5 |
| C3—C2—H2 | 120.9 | N1—C14—H14B | 109.5 |
| C2—C3—C4 | 121.5 (2) | C15—C14—H14B | 109.5 |
| C2—C3—H3 | 119.3 | H14A—C14—H14B | 108.1 |
| C4—C3—H3 | 119.3 | N2—C15—C14 | 110.1 (2) |
| C5—C4—C3 | 118.0 (2) | N2—C15—H15A | 109.6 |
| C5—C4—C7 | 121.9 (2) | C14—C15—H15A | 109.6 |
| C3—C4—C7 | 120.1 (2) | N2—C15—H15B | 109.6 |
| C4—C5—C6 | 120.7 (2) | C14—C15—H15B | 109.6 |
| C4—C5—H5 | 119.6 | H15A—C15—H15B | 108.1 |
| C6—C5—H5 | 119.6 | O1—C16—N2 | 124.3 (2) |
| C1—C6—C5 | 118.8 (2) | O1—C16—O2 | 125.2 (2) |
| C1—C6—H6 | 120.6 | N2—C16—O2 | 110.50 (19) |
| C5—C6—H6 | 120.6 | O2—C17—C18 | 110.9 (3) |
| C8—C7—C4 | 177.4 (2) | O2—C17—C19 | 109.7 (2) |
| C7—C8—C9 | 179.2 (3) | C18—C17—C19 | 112.0 (3) |
| C8—C9—N1 | 111.34 (17) | O2—C17—C20 | 101.0 (2) |
| C8—C9—C10 | 109.5 (2) | C18—C17—C20 | 111.7 (3) |
| N1—C9—C10 | 109.80 (17) | C19—C17—C20 | 111.1 (3) |
| C8—C9—C11 | 108.59 (18) | C17—C18—H18A | 109.5 |
| N1—C9—C11 | 109.55 (19) | C17—C18—H18B | 109.5 |
| C10—C9—C11 | 108.0 (2) | H18A—C18—H18B | 109.5 |
| C9—C10—H10A | 109.5 | C17—C18—H18C | 109.5 |
| C9—C10—H10B | 109.5 | H18A—C18—H18C | 109.5 |
| H10A—C10—H10B | 109.5 | H18B—C18—H18C | 109.5 |
| C9—C10—H10C | 109.5 | C17—C19—H19A | 109.5 |
| H10A—C10—H10C | 109.5 | C17—C19—H19B | 109.5 |
| H10B—C10—H10C | 109.5 | H19A—C19—H19B | 109.5 |
| C9—C11—H11A | 109.5 | C17—C19—H19C | 109.5 |
| C9—C11—H11B | 109.5 | H19A—C19—H19C | 109.5 |
| H11A—C11—H11B | 109.5 | H19B—C19—H19C | 109.5 |
| C9—C11—H11C | 109.5 | C17—C20—H20A | 109.5 |
| H11A—C11—H11C | 109.5 | C17—C20—H20B | 109.5 |
| H11B—C11—H11C | 109.5 | H20A—C20—H20B | 109.5 |
| N1—C12—C13 | 110.77 (19) | C17—C20—H20C | 109.5 |
| N1—C12—H12A | 109.5 | H20A—C20—H20C | 109.5 |
| C13—C12—H12A | 109.5 | H20B—C20—H20C | 109.5 |
| C6—C1—C2—C3 | 1.7 (4) | C16—N2—C13—C12 | 125.9 (3) |
| F1—C1—C2—C3 | −177.9 (2) | C15—N2—C13—C12 | −53.4 (3) |
| C1—C2—C3—C4 | −0.7 (3) | N1—C12—C13—N2 | 56.6 (3) |
| C2—C3—C4—C5 | −0.3 (3) | C12—N1—C14—C15 | 60.9 (2) |
| C2—C3—C4—C7 | 179.7 (2) | C9—N1—C14—C15 | −171.60 (19) |
| C3—C4—C5—C6 | 0.5 (4) | C16—N2—C15—C14 | −125.5 (3) |
| C7—C4—C5—C6 | −179.6 (2) | C13—N2—C15—C14 | 53.7 (3) |
| C2—C1—C6—C5 | −1.5 (4) | N1—C14—C15—N2 | −57.5 (3) |
| F1—C1—C6—C5 | 178.1 (2) | C15—N2—C16—O1 | 178.3 (3) |
| C4—C5—C6—C1 | 0.4 (4) | C13—N2—C16—O1 | −0.9 (4) |
| C12—N1—C9—C8 | 64.1 (2) | C15—N2—C16—O2 | −2.3 (4) |
| C14—N1—C9—C8 | −60.5 (2) | C13—N2—C16—O2 | 178.6 (2) |
| C12—N1—C9—C10 | −57.3 (2) | C17—O2—C16—O1 | 1.8 (4) |
| C14—N1—C9—C10 | 178.12 (19) | C17—O2—C16—N2 | −177.7 (2) |
| C12—N1—C9—C11 | −175.76 (19) | C16—O2—C17—C18 | −63.8 (3) |
| C14—N1—C9—C11 | 59.6 (2) | C16—O2—C17—C19 | 60.4 (3) |
| C14—N1—C12—C13 | −60.2 (2) | C16—O2—C17—C20 | 177.7 (3) |
| C9—N1—C12—C13 | 172.46 (18) |
| F1—C1 | 1.359 (3) |
| O1—C16 | 1.211 (3) |
| O2—C16 | 1.345 (3) |
| N2—C16 | 1.336 (3) |
| C1—C6 | 1.351 (4) |
| C7—N2 | 3.508 |
| N1—C12—C13 | 110.77 (19) |
| N2—C15—C14 | 110.1 (2) |
| C12—N1—C9 | 113.89 (18) |
| C14—N1—C9 | 113.48 (16) |
| C12—N1—C14 | 108.36 (16) |
| C16—N2—C15 | 126.30 (19) |
| C16—N2—C13 | 120.9 (2) |
| C15—N2—C13 | 112.8 (2) |