Literature DB >> 33936422

A semantic database for integrated management of image and dosimetric data in low radiation dose research in medical imaging.

Bernard Gibaud1, Marine Brenet1, Guillaume Pasquier2, Alex Vergara Gil3,4, Manuel Bardiès3,4, John Stratakis5, John Damilakis5, Nicolas Van Dooren6, Joël Spaltenstein6, Osman Ratib6.   

Abstract

Medical ionizing radiation procedures and especially medical imaging are a non negligible source of exposure to patients. Whereas the biological effects of high absorbed doses are relatively well known, the effects of low absorbed doses are still debated. This work presents the development of a computer platform called Image and Radiation Dose BioBank (IRDBB) to manage research data produced in the context of the MEDIRAD project, a European project focusing on research on low doses in the context of medical procedures. More precisely, the paper describes a semantic database linking dosimetric data (such as absorbed doses to organs) to the images corresponding to X-rays exposure (such as CT images) or scintigraphic images (such as SPECT or PET images) that allow measuring the distribution of a radiopharmaceutical. The main contributions of this work are: 1) the implementation of the semantic database of the IRDBB system and 2) an ontology called OntoMEDIRAD covering the domain of discourse involved in MEDIRAD research data, especially many concepts from the DICOM standard modelled according to a realist approach. ©2020 AMIA - All rights reserved.

Entities:  

Keywords:  DICOM; Imaging biobanks; Medical imaging; Ontologies; Radiation protection; Semantic technologies

Year:  2021        PMID: 33936422      PMCID: PMC8075532     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  14 in total

1.  EANM Dosimetry Committee guidance document: good practice of clinical dosimetry reporting.

Authors:  M Lassmann; C Chiesa; G Flux; M Bardiès
Journal:  Eur J Nucl Med Mol Imaging       Date:  2010-08-27       Impact factor: 9.236

2.  From concepts to clinical reality: an essay on the benchmarking of biomedical terminologies.

Authors:  Barry Smith
Journal:  J Biomed Inform       Date:  2005-11-02       Impact factor: 6.317

3.  Strategies for referent tracking in electronic health records.

Authors:  Werner Ceusters; Barry Smith
Journal:  J Biomed Inform       Date:  2005-09-09       Impact factor: 6.317

4.  An ontology for PACS integration.

Authors:  Charles E Kahn; David S Channin; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2006-12       Impact factor: 4.056

5.  The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Authors:  Barry Smith; Michael Ashburner; Cornelius Rosse; Jonathan Bard; William Bug; Werner Ceusters; Louis J Goldberg; Karen Eilbeck; Amelia Ireland; Christopher J Mungall; Neocles Leontis; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Richard H Scheuermann; Nigam Shah; Patricia L Whetzel; Suzanna Lewis
Journal:  Nat Biotechnol       Date:  2007-11       Impact factor: 54.908

6.  Building and Querying RDF/OWL Database of Semantically Annotated Nuclear Medicine Images.

Authors:  Kyung Hoon Hwang; Haejun Lee; Geon Koh; Debra Willrett; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2017-02       Impact factor: 4.056

7.  ESR Position Paper on Imaging Biobanks.

Authors: 
Journal:  Insights Imaging       Date:  2015-05-22

8.  The EBI RDF platform: linked open data for the life sciences.

Authors:  Simon Jupp; James Malone; Jerven Bolleman; Marco Brandizi; Mark Davies; Leyla Garcia; Anna Gaulton; Sebastien Gehant; Camille Laibe; Nicole Redaschi; Sarala M Wimalaratne; Maria Martin; Nicolas Le Novère; Helen Parkinson; Ewan Birney; Andrew M Jenkinson
Journal:  Bioinformatics       Date:  2014-01-11       Impact factor: 6.937

9.  Sharing brain mapping statistical results with the neuroimaging data model.

Authors:  Camille Maumet; Tibor Auer; Alexander Bowring; Gang Chen; Samir Das; Guillaume Flandin; Satrajit Ghosh; Tristan Glatard; Krzysztof J Gorgolewski; Karl G Helmer; Mark Jenkinson; David B Keator; B Nolan Nichols; Jean-Baptiste Poline; Richard Reynolds; Vanessa Sochat; Jessica Turner; Thomas E Nichols
Journal:  Sci Data       Date:  2016-12-06       Impact factor: 6.444

10.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

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