Literature DB >> 33936389

DeepCompete : A deep learning approach to competing risks in continuous time domain.

Pengyu Huang1, Yan Liu1.   

Abstract

An increasing number of people survive longer ages leading to a growing population of people 65 years of age or older. A large percentage of this population is afflicted with multiple acute diseases (multi-morbidity). Clinicians need new tools to quantify the relative risk of an adverse event due to each competing disease and prioritize treatment among various diseases affecting a patient. Currently available deep learning survival analysis models have limited ability to incorporate multiple risks. Also, deep learning survival analysis models in current literature work predominantly in the discrete-time domain, while all biochemical processes continuously happen in the body. In this work, we introduce a novel architecture for a continuous-time deep learning model to combat these two issues, DeepCompete, aimed at survival analysis for competing risks. Our model learns the risk of each disease in an entirely data-driven fashion without making strong assumptions about the underlying stochastic processes. Further, we demonstrate that our model has superior results compared to state of the art continuous-time statistical models for survival analysis. ©2020 AMIA - All rights reserved.

Entities:  

Year:  2021        PMID: 33936389      PMCID: PMC8075516     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  14 in total

1.  Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning.

Authors:  Margaret A Shipp; Ken N Ross; Pablo Tamayo; Andrew P Weng; Jeffery L Kutok; Ricardo C T Aguiar; Michelle Gaasenbeek; Michael Angelo; Michael Reich; Geraldine S Pinkus; Tane S Ray; Margaret A Koval; Kim W Last; Andrew Norton; T Andrew Lister; Jill Mesirov; Donna S Neuberg; Eric S Lander; Jon C Aster; Todd R Golub
Journal:  Nat Med       Date:  2002-01       Impact factor: 53.440

2.  A neural network model for survival data.

Authors:  D Faraggi; R Simon
Journal:  Stat Med       Date:  1995-01-15       Impact factor: 2.373

Review 3.  Current status of artificial intelligence applications in urology and their potential to influence clinical practice.

Authors:  Jian Chen; Daphne Remulla; Jessica H Nguyen; D Aastha; Yan Liu; Prokar Dasgupta; Andrew J Hung
Journal:  BJU Int       Date:  2019-06-20       Impact factor: 5.588

4.  Use of gene-expression profiling to identify prognostic subclasses in adult acute myeloid leukemia.

Authors:  Lars Bullinger; Konstanze Döhner; Eric Bair; Stefan Fröhling; Richard F Schlenk; Robert Tibshirani; Hartmut Döhner; Jonathan R Pollack
Journal:  N Engl J Med       Date:  2004-04-15       Impact factor: 91.245

5.  Gene-expression profiles predict survival of patients with lung adenocarcinoma.

Authors:  David G Beer; Sharon L R Kardia; Chiang-Ching Huang; Thomas J Giordano; Albert M Levin; David E Misek; Lin Lin; Guoan Chen; Tarek G Gharib; Dafydd G Thomas; Michelle L Lizyness; Rork Kuick; Satoru Hayasaka; Jeremy M G Taylor; Mark D Iannettoni; Mark B Orringer; Samir Hanash
Journal:  Nat Med       Date:  2002-07-15       Impact factor: 53.440

6.  Boosting the concordance index for survival data--a unified framework to derive and evaluate biomarker combinations.

Authors:  Andreas Mayr; Matthias Schmid
Journal:  PLoS One       Date:  2014-01-06       Impact factor: 3.240

7.  Multitask learning and benchmarking with clinical time series data.

Authors:  Hrayr Harutyunyan; Hrant Khachatrian; David C Kale; Greg Ver Steeg; Aram Galstyan
Journal:  Sci Data       Date:  2019-06-17       Impact factor: 6.444

8.  Repeated observation of breast tumor subtypes in independent gene expression data sets.

Authors:  Therese Sorlie; Robert Tibshirani; Joel Parker; Trevor Hastie; J S Marron; Andrew Nobel; Shibing Deng; Hilde Johnsen; Robert Pesich; Stephanie Geisler; Janos Demeter; Charles M Perou; Per E Lønning; Patrick O Brown; Anne-Lise Børresen-Dale; David Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-26       Impact factor: 12.779

9.  Allowing for mandatory covariates in boosting estimation of sparse high-dimensional survival models.

Authors:  Harald Binder; Martin Schumacher
Journal:  BMC Bioinformatics       Date:  2008-01-10       Impact factor: 3.169

10.  Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data.

Authors:  Travers Ching; Xun Zhu; Lana X Garmire
Journal:  PLoS Comput Biol       Date:  2018-04-10       Impact factor: 4.475

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