Literature DB >> 33931265

Evolution of Diverse Strategies for Promoter Regulation.

Václav Brázda1, Martin Bartas2, Richard P Bowater3.   

Abstract

DNA is fundamentally important for all cellular organisms due to its role as a store of hereditary genetic information. The precise and accurate regulation of gene transcription depends primarily on promoters, which vary significantly within and between genomes. Some promoters are rich in specific types of bases, while others have more varied, complex sequence characteristics. However, it is not only base sequence but also epigenetic modifications and altered DNA structure that regulate promoter activity. Significantly, many promoters across all organisms contain sequences that can form intrastrand hairpins (cruciforms) or four-stranded structures (G-quadruplex or i-motif). In this review we integrate recent studies on promoter regulation that highlight the importance of DNA structure in the evolutionary adaptation of promoter sequences.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Keywords:  DNA base sequence; DNA structure; epigenetics; evolution; promoters; transcription

Year:  2021        PMID: 33931265     DOI: 10.1016/j.tig.2021.04.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  8 in total

1.  The Dynamics of NO3- and NH4+ Uptake in Duckweed Are Coordinated with the Expression of Major Nitrogen Assimilation Genes.

Authors:  Yuzhen Zhou; Olena Kishchenko; Anton Stepanenko; Guimin Chen; Wei Wang; Jie Zhou; Chaozhi Pan; Nikolai Borisjuk
Journal:  Plants (Basel)       Date:  2021-12-21

2.  Isolation and Functional Characterization of a Green-Tissue Promoter in Japonica Rice (Oryza sativa subsp. Japonica).

Authors:  Mi Lin; Jingwan Yan; Muhammad Moaaz Ali; Shaojuan Wang; Shengnan Tian; Faxing Chen; Zhimin Lin
Journal:  Biology (Basel)       Date:  2022-07-22

3.  Genetic engineering for enhanced production of a novel alkaline protease BSP-1 in Bacillus amyloliquefaciens.

Authors:  Cong Jiang; Changwen Ye; Yongfeng Liu; Kuo Huang; Xuedeng Jiang; Dian Zou; Lu Li; Wenyuan Han; Xuetuan Wei
Journal:  Front Bioeng Biotechnol       Date:  2022-08-30

4.  Genome-wide identification, phylogenetic and expression pattern analysis of Dof transcription factors in blueberry (Vaccinium corymbosum L.).

Authors:  Tianjie Li; Xiaoyu Wang; Dinakaran Elango; Weihua Zhang; Min Li; Fan Zhang; Qi Pan; Ying Wu
Journal:  PeerJ       Date:  2022-10-03       Impact factor: 3.061

Review 5.  Impact of One-Carbon Metabolism-Driving Epitranscriptome as a Therapeutic Target for Gastrointestinal Cancer.

Authors:  Yu Takeda; Ryota Chijimatsu; Andrea Vecchione; Takahiro Arai; Toru Kitagawa; Ken Ofusa; Masami Yabumoto; Takaaki Hirotsu; Hidetoshi Eguchi; Yuichiro Doki; Hideshi Ishii
Journal:  Int J Mol Sci       Date:  2021-07-06       Impact factor: 5.923

6.  A CpG island promoter drives the CXXC5 gene expression.

Authors:  Pelin Yaşar; Gizem Kars; Kerim Yavuz; Gamze Ayaz; Çerağ Oğuztüzün; Ecenaz Bilgen; Zeynep Suvacı; Özgül Persil Çetinkol; Tolga Can; Mesut Muyan
Journal:  Sci Rep       Date:  2021-08-02       Impact factor: 4.379

7.  Searching for New Z-DNA/Z-RNA Binding Proteins Based on Structural Similarity to Experimentally Validated Zα Domain.

Authors:  Martin Bartas; Kristyna Slychko; Václav Brázda; Jiří Červeň; Christopher A Beaudoin; Tom L Blundell; Petr Pečinka
Journal:  Int J Mol Sci       Date:  2022-01-11       Impact factor: 5.923

8.  Recognition Interface of the Thrombin Binding Aptamer Requires Antiparallel Topology of the Quadruplex Core.

Authors:  Julia Svetlova; Makar Sardushkin; Natalia Kolganova; Edward Timofeev
Journal:  Biomolecules       Date:  2021-09-09
  8 in total

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