Literature DB >> 33927786

Tools for the discovery of biopolymer producing cysteine relays.

Peter D Mabbitt1.   

Abstract

Cysteine relays, where a protein or small molecule is transferred multiple times via transthiolation, are central to the production of biological polymers. Enzymes that utilise relay mechanisms display broad substrate specificity and are readily engineered to produce new polymers. In this review, I discuss recent advances in the discovery, engineering and biophysical characterisation of cysteine relays. I will focus on eukaryotic ubiquitin (Ub) cascades and prokaryotic polyhydroxyalkanoate (PHA) synthesis. These evolutionarily distinct processes employ similar chemistry and are readily modified for biotechnological applications. Both processes have been studied intensively for decades, yet recent studies suggest we do not fully understand their mechanistic diversity or plasticity. I will discuss the important role that activity-based probes (ABPs) and other chemical tools have had in identifying and delineating Ub cysteine-relays and the potential for ABPs to be applied to PHA synthases. Finally, I will offer a personal perspective on the potential of engineering cysteine-relays for non-native polymer production. © International Union for Pure and Applied Biophysics (IUPAB) and Springer-Verlag GmbH Germany, part of Springer Nature 2021.

Entities:  

Keywords:  Cell signalling; Cysteine; Transthiolation; polymer production

Year:  2021        PMID: 33927786      PMCID: PMC8046679          DOI: 10.1007/s12551-021-00792-y

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  83 in total

Review 1.  Chemical strategies for activity-based proteomics.

Authors:  Anna E Speers; Benjamin F Cravatt
Journal:  Chembiochem       Date:  2004-01-03       Impact factor: 3.164

Review 2.  Polyhydroxyalkanoate granules are complex subcellular organelles (carbonosomes).

Authors:  Dieter Jendrossek
Journal:  J Bacteriol       Date:  2009-03-06       Impact factor: 3.490

3.  Biochemical evidence that phaZ gene encodes a specific intracellular medium chain length polyhydroxyalkanoate depolymerase in Pseudomonas putida KT2442: characterization of a paradigmatic enzyme.

Authors:  Laura I de Eugenio; Pedro Garci A; José M Luengo; Jesu S M Sanz; Julio San Roma N; José Luis Garci A; Mari A A Prieto
Journal:  J Biol Chem       Date:  2006-12-14       Impact factor: 5.157

4.  Structure of the Catalytic Domain of the Class I Polyhydroxybutyrate Synthase from Cupriavidus necator.

Authors:  Elizabeth C Wittenborn; Marco Jost; Yifeng Wei; JoAnne Stubbe; Catherine L Drennan
Journal:  J Biol Chem       Date:  2016-10-14       Impact factor: 5.157

5.  Kinetic and mechanistic studies on the hydrolysis of ubiquitin C-terminal 7-amido-4-methylcoumarin by deubiquitinating enzymes.

Authors:  L C Dang; F D Melandri; R L Stein
Journal:  Biochemistry       Date:  1998-02-17       Impact factor: 3.162

6.  Crystal structure of Ralstonia eutropha polyhydroxyalkanoate synthase C-terminal domain and reaction mechanisms.

Authors:  Jieun Kim; Yeo-Jin Kim; So Young Choi; Sang Yup Lee; Kyung-Jin Kim
Journal:  Biotechnol J       Date:  2016-11-30       Impact factor: 4.677

7.  A patatin-like protein associated with the polyhydroxyalkanoate (PHA) granules of Haloferax mediterranei acts as an efficient depolymerase in the degradation of native PHA.

Authors:  Guiming Liu; Jing Hou; Shuangfeng Cai; Dahe Zhao; Lei Cai; Jing Han; Jian Zhou; Hua Xiang
Journal:  Appl Environ Microbiol       Date:  2015-02-20       Impact factor: 4.792

8.  An enzyme with ubiquitin carboxy-terminal esterase activity from reticulocytes.

Authors:  I A Rose; J V Warms
Journal:  Biochemistry       Date:  1983-08-30       Impact factor: 3.162

9.  Activity-based diubiquitin probes for elucidating the linkage specificity of deubiquitinating enzymes.

Authors:  Guorui Li; Qin Liang; Ping Gong; Adam H Tencer; Zhihao Zhuang
Journal:  Chem Commun (Camb)       Date:  2014-01-07       Impact factor: 6.222

Review 10.  Chemical ubiquitination for decrypting a cellular code.

Authors:  Mathew Stanley; Satpal Virdee
Journal:  Biochem J       Date:  2016-05-15       Impact factor: 3.857

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