Literature DB >> 33924778

Global Discrepancies between Numbers of Available SARS-CoV-2 Genomes and Human Development Indexes at Country Scales.

Philippe Colson1,2, Didier Raoult1,2.   

Abstract

It has now been over a year since SARS-CoV-2 first emerged in China, in December 2019, and it has spread rapidly around the world. Some variants are currently considered of great concern. We aimed to analyze the numbers of SARS-CoV-2 genome sequences obtained in different countries worldwide until January 2021. On 28 January 2021, we downloaded the deposited genome sequence origin from the GISAID database, and from the "Our world in data" website we downloaded numbers of SARS-CoV-2-diagnosed cases, numbers of SARS-CoV-2-associated deaths, population size, life expectancy, gross domestic product (GDP) per capita, and human development index per country. Files were merged and data were analyzed using Microsoft Excel software. A total of 450,968 SARS-CoV-2 genomes originating from 135 countries on the 5 continents were available. When considering the 19 countries for which the number of genomes per 100 deaths was >100, six were in Europe, while eight were in Asia, three were in Oceania and two were in Africa. Six (30%) of these countries are beyond rank 75, regarding the human development index and four (20%) are beyond rank 80 regarding GDP per capita. Moreover, the comparisons of the number of genomes sequenced per 100 deaths to the human development index by country show that some Western European countries have released similar or lower numbers of genomes than many African or Asian countries with a lower human development index. Previous data highlight great discrepancies between the numbers of available SARS-CoV-2 genomes per 100 cases and deaths and the ranking of countries regarding wealth and development.

Entities:  

Keywords:  SARS-CoV-2; country-scale development; genome; next-generation sequencing; variant; world

Year:  2021        PMID: 33924778     DOI: 10.3390/v13050775

Source DB:  PubMed          Journal:  Viruses        ISSN: 1999-4915            Impact factor:   5.048


  4 in total

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Authors:  Jakob McBroome; Jennifer Martin; Adriano de Bernardi Schneider; Yatish Turakhia; Russell Corbett-Detig
Journal:  Virus Evol       Date:  2022-06-16

2.  Special Issue "Emerging Viruses 2021: Surveillance, Prevention, Evolution and Control".

Authors:  Fabrício Souza Campos; Maité Freitas Silva Vaslin; Luciana Barros de Arruda
Journal:  Viruses       Date:  2022-04-15       Impact factor: 5.818

3.  Evolutionary Dynamics of Indels in SARS-CoV-2 Spike Glycoprotein.

Authors:  R Shyama Prasad Rao; Nagib Ahsan; Chunhui Xu; Lingtao Su; Jacob Verburgt; Luca Fornelli; Daisuke Kihara; Dong Xu
Journal:  Evol Bioinform Online       Date:  2021-12-06       Impact factor: 1.625

4.  Low Represented Mutation Clustering in SARS-CoV-2 B.1.1.7 Sublineage Group with Synonymous Mutations in the E Gene.

Authors:  Paolo Giuseppe Bonacci; Dalida Angela Bivona; Dafne Bongiorno; Stefano Stracquadanio; Mariacristina Massimino; Carmelo Bonomo; Alessia Stracuzzi; Paolo Pennisi; Nicolò Musso; Stefania Stefani
Journal:  Diagnostics (Basel)       Date:  2021-12-07
  4 in total

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