Lucia Veltri1, Roberta Amuso1, Marzia Petrilli1, Corrado Cuocci2, Maria A Chiacchio3, Paola Vitale4, Bartolo Gabriele1. 1. Laboratory of Industrial and Synthetic Organic Chemistry (LISOC), Department of Chemistry and Chemical Technologies, University of Calabria, Via Pietro Bucci 12/C, 87036 Arcavacata di Rende, Italy. 2. Institute of Crystallography, National Research Council, Via Amendola, 122/O, 70126 Bari, Italy. 3. Department of Drug Sciences, University of Catania, Viale A. Doria 6, 95125 Catania, Italy. 4. Department of Pharmacy-Pharmaceutical Sciences, University of Bari "Aldo Moro", Via E. Orabona 4, 70125 Bari, Italy.
Abstract
A straightforward approach to new polycyclic heterocycles, 1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-ones, is presented. It is based on the ZnCl2-promoted deprotective 6-endo-dig heterocyclization of N-Boc-2-alkynylbenzimidazoles under mild conditions (CH2Cl2, 40 °C for 3 h). The zinc center plays a dual role, as it promotes Boc deprotection (with formation of the tert-butyl carbocation, which can be trapped by substrates bearing a nucleophilic group) and activates the triple bond toward intramolecular nucleophilic attack by the carbamate group. The structure of representative products has been confirmed by X-ray diffraction analysis.
A straightforward approach to new polycyclicheterocycles, 1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-ones, is presented. It is based on the ZnCl2-promoted deprotective 6-endo-dig heterocyclization of N-Boc-2-alkynylbenzimidazoles under mild conditions (CH2Cl2, 40 °C for 3 h). The zinccenter plays a dual role, as it promotes Boc deprotection (with formation of the tert-butyl carbocation, which can be trapped by substrates bearing a nucleophilic group) and activates the triple bond toward intramolecular nucleophilic attack by the carbamate group. The structure of representative products has been confirmed by X-ray diffraction analysis.
The development of efficient methods for the synthesis of high value added polycyclic heterocyclic derivatives by metal-promoted annulation of acyclic precursors is one of the most important area of research in heterocyclicchemistry [1,2,3,4,5]. Polycyclic heterocyclic systems, in fact, are largely present as fundamental cores in natural products and in biologically active compounds [6,7,8,9,10,11], and the possibility to obtain them by a simple cyclization process starting from readily available substrates is particularly attractive [1,2,3,4,5].Among acyclic substrates able to undergo a metal-promoted cyclization to give a polycyclic heterocycle, functionalized alkynes bearing a suitably placed heteronucleophile play a major role, as the triple bond can be easily electrophilically activated by a suitable metal species thus promoting the cyclization by intramolecular nucleophilic attack [1,2,3,4,5]. Usually, processes like these are promoted by costly metals (mainly gold [12,13,14,15,16,17,18,19], palladium [20,21,22,23], rhodium [24,25,26], platinum [27,28,29], and, occasionally, ruthenium [30]), while the use of less expensive metal species, such as cobalt [31], nickel [32], copper [33,34,35,36], zinc [37,38,39,40], and silver [41,42] compounds, has been scantly reported in the literature, and applied to a limited number of examples.In this work, we report on the use of very simple and inexpensive ZnCl2 as a promoter for the efficient deprotective heterocyclization of N-Boc-2-alkynylbenzimidazoles 1, to give access to novel polycyclicheterocycles, that are, 1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-ones 2 (Scheme 1). It is worth mentioning in this context that the cyclization of O-Boc propargyl alcohols to give 4H-1,3-dioxin-2-ones and/or 4-alkylidene-1,3-dioxolan-2-ones has been previously reported to occur with mercuric triflate as the catalyst [43]. It is also important to note that some excellent reviews on Zn-catalyzed reactions have appeared in the recent literature [44,45,46,47,48].
Scheme 1
This work: ZnCl2-assisted heterocyclization of N-Boc-alkynylbenzimidazoles 1 to benzimidazoxaxinones 2.
2. Results and Discussion
It is well known that zinc (II)compounds are able to promote Boc deprotection [49,50,51,52,53,54]. In particular, an excess of ZnBr2 has been successfully employed for the deprotection of N-Boc secondary amines [52] as well as of tert-butyl esters [53,54]. Considering the importance of developing new approaches to the synthesis of polycyclicheterocycles by heterocyclization processes promoted by non-noble and inexpensive metal species, we have explored the possibility to access new polycyclicheterocycles, that are 1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-ones 2, starting from readily available N-Boc-2-alkynylbenzimidazoles 1, by Zn(II)-assisted deprotective heterocyclization (Scheme 1). According to our rationale, the zinccenter should play a double role, that is, to promote deprotection to give a carbamate species A (with elimination of isobutene and H+ from the ensuing tert-butyl carbocation [52,53,54]) and then assist a 6-endo-dig heterocyclization by intramolecular nucleophilic attack of the free carbamate group of species B (in equilibrium with A) on the triple bond activated by coordination to Zn2+ (with the zinccenter stabilized by chelation by the benzimidazole nitrogen). This would lead to organizinc intermediate C, whose protonolysis would then afford the polycyclicheterocycles 2 (Scheme 2; zinccounteranions have been omitted for clarity).
Scheme 2
Mechanistic hypothesis for the formation of polycyclic heterocycles 2 by Zn2+‒mediated sequential deprotection ‒ 6-endo-dig heterocyclization of N-Boc-alkynylbenzimidazoles 1.
The first experiments were performed using N-Boc-2-(hex-1-in-1-yl)-1H-benzo[d]imidazole 1a as substrate (R1 = H, R2 = Bu) (prepared by alkynylation of N-Boc-2-bromo-1H-benzo[d]imidazole, see the Supplementary Materials for details), which was allowed to react in CH2Cl2 as the solvent at room temperature in the presence of ZnBr2 (1 equiv). Under these conditions, after 3 h reaction time, substrate conversion was 51%, while the desired 3-butyl-1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-one 2a was isolated in 25% yield. The structure of 2a was unequivocally confirmed by XRD analysis (see the Supplementary Materials for XRD data). The X-ray structure of 2a, shown in Figure 1, confirmed that the heterocyclization process at intermediate B level occurred in a 6-endo-dig fashion (with closure to a 6-membered ring) rather than in the possible alternative 5-exo-dig fashion (with closure to a five-membered ring).
Figure 1
Molecular structure of 3-butyl-1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-one 2a. Color legend: carbon (light grey), hydrogen (white), oxygen (red), nitrogen (blue) (CCDC 2050576).
In spite of the low yield, this initial result was encouraging, since it confirmed the validity of our work hypothesis and the possibility to synthesize novel polycyclicheterocycles with a very simple approach and using an inexpensive promoter. In order to improve the reaction performance, and achieve a higher 2a yield, we then changed some operative parameters (Table 1, entries 2–9). Practically no reaction occurred by changing the solvent to MeOH (Table 1, entry 2), while only traces of 2a were detected in acetone (Table 1, entry 3). Lowering the amount of ZnBr2 significantly suppressed the reaction (Table 1, entry 4). On the other hand, the use of 1.5 or 2 equiv of ZnBr2 was beneficial, 2a being formed in ca. 70% isolated yield (Table 1, entries 5 and 6, respectively). Better results with respect to the parent reaction (Table 1, entry 1) were also obtained by increasing the 1a concentration from 0.5 (Table 1, entry 1) to 1 mmol/mL of CH2Cl2 (Table 1, entry 7), while more diluted conditions led to a lower 2a yield (Table 1, entry 8). Predictably, a faster reaction was observed at 40 °C rather than 25 °C, with a higher yield of 2a (Table 1, entry 9) with respect to the initial experiment (Table 1, entry 1). Under the optimized conditions (40 °C in CH2Cl2 in the presence of 1.5 equiv of ZnBr2, with a substrate concentration of 1 mmol per mL of solvent), 2a could be finally obtained in a yield as high as 79% (Table 1, entry 10).
Table 1
ZnX2-promoted deprotective heterocyclization of N-Boc-2-(hex-1-in-1-yl)-1H-benzo[d]imidazole 1a under different conditions .
Entry
ZnX2 (Equiv)
T (°C)
Solvent
Concentration of 1a b
Conversion of 1a (%) c
Yield of 2a (%) d
1
ZnBr2 (1)
25
CH2Cl2
0.5
51
25
2
ZnBr2 (1)
25
MeOH
0.5
3
0
3
ZnBr2 (1)
25
acetone
0.5
12
Traces
4
ZnBr2 (0.5)
25
CH2Cl2
0.5
9
6
5
ZnBr2 (1.5)
25
CH2Cl2
0.5
100
72
6
ZnBr2 (2)
25
CH2Cl2
0.5
100
70
7
ZnBr2 (1)
25
CH2Cl2
1.0
62
33
8
ZnBr2 (1)
25
CH2Cl2
0.2
42
10
9
ZnBr2 (1)
40
CH2Cl2
0.5
100
63
10
ZnBr2 (1.5)
40
CH2Cl2
1.0
100
79
11
ZnCl2 (1.5)
40
CH2Cl2
1.0
100
82
12
ZnI2 (1.5)
40
CH2Cl2
1.0
100
77
All reactions were carried out for 3 h. Mmol of starting 1a per mL of solvent. Based on unreacted 1a, upon isolation from the reaction mixture. Isolated yield based on starting 1a.
Very interestingly, the reaction was also successful using ZnCl2 (Table 1, entry 11) or ZnI2 (Table 1, entry 12), the best results in terms of 2a yield being obtained with ZnCl2 (82%, Table 1, entry 11). This result, associated with the lower cost of ZnCl2, made ZnCl2 the promoter of choice for realizing the transformation of 1a into benzimidazoxazinone 2a and for the subsequent extension to other differently substituted substrates (Table 2). Thus, to assess the generality of the reaction, various N-Boc-alkynylbenzimidazoles 1 (bearing different R1 and R2 groups; prepared as detailed in the Supplementary Materials) were subjected to the optimized reaction conditions with ZnCl2 as the promoter (Table 2, entries 2–15).
Table 2
Synthesis of 1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-ones 2 by ZnCl2-promoted deprotective heterocyclization of N-Boc-2-alkynylbenzimidazoles 1
Entry
1
2
Yield of 2 (%) b
1
82
2
77
3
76
4
83
5
77
6
45 c
7
30 d
8
85
9
82
10
80
11
70
12
66
13
60
14
74
15
66
All reactions were carried out in CH2Cl2 (1 mmol of 1 per mL of solvent) at 40 °C for 3 h. Isolated yield based on starting 1. The reaction led also to 2-(hex-1-yn-1-yl)-6-nitro-1H-benzo[d]imidazole 3f in 20% isolated yield. The reaction led also to 2-(hex-1-yn-1-yl)-5-nitro-1H-benzo[d]imidazole 3g in 31% isolated yield.
As can be seen from Table 2, entries 2–5, excellent results were obtained with substrates still with R2 = Bu and bearing either electron-donating (methyl or methoxy; yields of the corresponding products 2b–d were 76–83%, Table 2, entries 2–4) or electron-withdrawing chlorine substituents (yield of 2e = 77%, Table 2, entry 5) on the aromatic ring. On the other hand, inferior results were observed with substrates 1f and 1g, bearing a strong electron-withdrawing nitro substituent (yields of 2f and 2g were 45% and 30%, Table 2, entries 6 and 7, respectively). With these substrates, complete Boc removal competed with heterocyclization, as confirmed by the formation of not negligible amounts of deprotected compounds 3f and 3g (20% and 31%, respectively, Table 2, entries 6 and 7) (Scheme 3), not observed in other cases. Clearly, the formation of these byproducts from substrates 1f and 1g is due to the diminished nucleophilicity of the carbamate intermediate B (Scheme 2) caused by the strong electron-withdrawing effect of the nitro group, which makes decarboxylation to compete with cyclization. The structures of products 2c and 2f were confirmed by XRD analysis (see the Supplementary Materials for XRD data). The X-ray structures of 2c and 2f, shown in Figure 2 and Figure 3, respectively, allowed to unequivocally establish the positions of the methoxy and nitro substituents in regioisomeric substrates 1c/1d and 1f/1g, respectively (as 2c must be formed from 1c and 2f from 1f).
Scheme 3
Formation of byproducts 3f and 3g (Table 2, entries 6 and 7) by Boc deprotection of nitro-substituted substrates 1f and 1g, competitive with heterocyclization.
Figure 2
Molecular structure of 3-butyl-8-methoxy-1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-one 2c. Color legend: carbon (light grey), hydrogen (white), oxygen (red), nitrogen (blue) (CCDC 2051334).
Figure 3
Molecular structure of 3-butyl-8-nitro-1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-one 2f. Color legend: carbon (light grey), hydrogen (white), oxygen (red), nitrogen (blue) (CCDC 2050711).
High yields of the corresponding benzimidazoxazinones were obtained by changing the alkyl substituent on the triple bond R2 to octyl (yield of 2h, 85%; Table 2, entry 8), isopentyl (yield of 2i, 82%; Table 2, entry 9), or phenethyl (yield of 2j, 80%; Table 2, entry 10), while a slightly lower yield was observed with R2 = cyclohexylmethyl (yield of 2k, 70%; Table 2, entry 11). The use of a substrate with the triple bond conjugated with an alkenyl group, as in N-Boc-2-(cyclohex-1-en-1-ylethynyl)-1H-benzo[d]imidazole 1l, led to a satisfactory yield of the corresponding polycyclic heterocycle 2l (66%; Table 2, entry 12).The method also worked nicely with substrates bearing a functionalized alkyl chain of the triple bond, as shown by the results obtained with a methoxymethyl (yield of 2m, 60%; Table 2, entry 13) or a 2-(methoxycarbonyl) ethyl (yield of 2n, 74%; Table 2, entry 14) group. Interestingly in the case of N-Boc-4-(1H-benzo[d]imidazol-2-yl) but-3-yn-1-ol 1o, bearing a 2-hydroxyethyl group on the triple bond, the tert-butyl group was incorporated into the final product to give 3-(2-(tert-butoxy)ethyl)-1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-one 2o’ (66% yield; Table 1, entry 15). This is clearly due to the trapping of the tert-butyl carbocation, ensuing from deprotection, by the nucleophilic hydroxyl group, as shown in Scheme 4.
Scheme 4
Plausible mechanism for the formation of product 2o’ (chloride anions are omitted for clarity).
3. Materials and Methods
3.1. General Experimental Methods
Melting points were measured with a Leitz Laborlux 12 POL polarizing optical microscope (Leitz Italia GmbH/Srl, Lana(BZ), Italy) and are uncorrected. 1H NMR and 13C NMR spectra were recorded at 25 °C in CDCl3 or DMSO-d6 at 300 MHz or 500 MHz and 75 or 125 MHz, respectively, with Me4Si as internal standard, using Bruker DPX Avance 300 and Bruker DPX Avance 500 NMR spectrometers (Brucker Italia s.r.l., Milano, Italy); chemical shifts (δ) and coupling constants (J) are given in ppm and in Hz, respectively. IR spectra were taken with a JASCO FT-IR 4200 spectrometer (Jasco Europe s.r.l., Cremella, Lecco, Italy). All reactions were analyzed by TLC on silica gel 60 F254 and by GC-MS using a Shimadzu QP-2010 GC–MS apparatus (Smimadzu Italia s.r.l., Milano, Italy) at 70 eV ionization voltage equipped with a 95% methyl polysiloxane–5% phenylpolysiloxanecapillary column (30 m × 0.25 mm, 0.25 μm). Column chromatography was performed on silica gel 60 (Merck, 70–230 mesh; Merck Life Science s.r.l., Milano, Italy). Evaporation refers to the removal of solvent under reduced pressure. The HRMS spectra were taken on an Agilent 1260 Infinity UHD accurate-mass Q-TOF mass spectrometer (Agilent Technologies Italia s.p.a. Cernusco sul Naviglio, Milano, Italy), equipped with an electrospray ion source (ESI) operated in dual ion mode. Ten microliters of the sample solutions (CH3OH) were introduced by continuous infusion at a flow rate of 200 L min−1 with the aid of a syringe pump. Experimental conditions were performed as follows: capillary voltage, 4000 V; nebulizer pressure, 20 psi; flow rate of drying gas, 10 L/min; temperature of sheath gas, 325 °C; flow rate of sheath gas, 10 L/min; skimmer voltage, 60 V; OCT1 RF Vpp, 750 V; fragmentor voltage, 170 V. The spectra data were recorded in the m/z range of 100–1000 Da in a centroid pattern of full-scan MS analysis mode. The MS/MS data of the selected compounds were obtained by regulating diverse collision energy (18–45 eV).
3.2. Preparation of Substrates
Substrates were prepared and characterized as described in the Supplementary Materials.
3.3. General Procedure for the Synthesis of Benzimidazoxazinone Derivatives
See Table 2 for reference. A Schlenk flask was charged under nitrogen with the N-Boc-2-alkynylbenzimidazole 1 (1 mmol) (1a: 298 mg; 1b: 326 mg; 1c: 328 mg; 1d: 328 mg; 1e: 367 mg; 1f: 343 mg; 1g: 343 mg; 1h: 354 mg; 1i: 312 mg; 1j: 346 mg; 1k: 338 mg; 1l: 322 mg; 1m, 286 mg; 1n: 328 mg; 1o: 286 mg), anhydrous CH2Cl2 (1 mL), and ZnCl2 (204 mg, 1.5 mmol). The reaction mixture was heated at 40 °C and then allowed to stir at this temperature for 3 h. After cooling, the reaction mixture was diluted with CH2Cl2 (5 mL) and water (5 mL) (for 2a-1, 2n, and 2o’). Alternatively, after cooling, the solvent was evaporated, and water (20 mL) was added to the residue (for 2m). Phases were separated the aqueous phase was washed with CH2Cl2 (5 mL), and the combined organic phases were dried with Na2SO4. After filtration and evaporation of the solvent, the product was purified by column chromatography on silica gel using hexane/AcOEt (8:2, v/v) as the eluent (for 2a-1l, 2n, and 2o’). For the purification of 2m, the suspension obtained as seen above was filtered, the precipitate washed with water (3 × 5 mL) and then purified by column chromatography on silica gel using hexane/AcOEt (8:2, v/v) as eluent. With substrates 1f and 1g, the reaction also led to the formation of deprotected products 3f and 3g, respectively (Scheme 3) (order of elution: 3f followed by 2f; 2g followed by 3g).
In conclusion, we have reported that simple and inexpensive ZnCl2 is able to promote the heterocyclization of N-Boc-2-alkynylbenzimidazoles under mild conditions (40 °C in CH2Cl2 for 3h), giving access to new polycyclicheterocycles, 1H-benzo[4,5]imidazo[1,2-c][1,3]oxazin-1-ones. While in the previous literature ZnCl2 was reported to promote complete N-Boc deprotection with elimination of isobutene and CO2, in the present process it assisted the 6-endo-dig heterocyclization of the carbamate intermediate with incorporation of the carbamate group into the final polyheterocyclic derivative. ZnCl2 thus played a dual role, by promoting the Boc deprotection of the substrate with elimination of the tert-butyl carbonation (which could be trapped by substrates bearing a nucleophilic group) and activating the triple bond toward the intramolecular nucleophilic attack by the carbamate moiety. The benzimidazoxazinone derivatives have been obtained in moderate to high yields starting from differently substituted substrates, and the structure of representative products has been confirmed by X-ray diffraction analysis.