Literature DB >> 33923067

Transcriptomic Analysis of Rice Plants Overexpressing PsGAPDH in Response to Salinity Stress.

Hyemin Lim1, Hyunju Hwang2, Taelim Kim1, Soyoung Kim3, Hoyong Chung4, Daewoo Lee5, Soorin Kim6, Soochul Park3, Woosuk Cho3, Hyeonso Ji3, Gangseob Lee3.   

Abstract

In plants, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a main enzyme in the glycolytic pathway. It plays an essential role in glycerolipid metabolism and response to various stresses. To examine the function of PsGAPDH (Pleurotus sajor-caju GAPDH) in response to abiotic stress, we generated transgenic rice plants with single-copy/intergenic/homozygous overexpression PsGAPDH (PsGAPDH-OX) and investigated their responses to salinity stress. Seedling growth and germination rates of PsGAPDH-OX were significantly increased under salt stress conditions compared to those of the wild type. To elucidate the role of PsGAPDH-OX in salt stress tolerance of rice, an Illumina HiSeq 2000 platform was used to analyze transcriptome profiles of leaves under salt stress. Analysis results of sequencing data showed that 1124 transcripts were differentially expressed. Using the list of differentially expressed genes (DEGs), functional enrichment analyses of DEGs such as Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were performed. KEGG pathway enrichment analysis revealed that unigenes exhibiting differential expression were involved in starch and sucrose metabolism. Interestingly, trehalose-6-phosphate synthase (TPS) genes, of which expression was enhanced by abiotic stress, showed a significant difference in PsGAPDH-OX. Findings of this study suggest that PsGAPDH plays a role in the adaptation of rice plants to salt stress.

Entities:  

Keywords:  glyceraldehyde-3-phosphate dehydrogenase; salt stress; tolerance; transcriptomic analysis; transgenic rice

Year:  2021        PMID: 33923067     DOI: 10.3390/genes12050641

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  41 in total

1.  Plant salt tolerance.

Authors:  J K Zhu
Journal:  Trends Plant Sci       Date:  2001-02       Impact factor: 18.313

2.  Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis.

Authors:  Sang-Dong Yoo; Young-Hee Cho; Jen Sheen
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 3.  The impact of next-generation sequencing technology on genetics.

Authors:  Elaine R Mardis
Journal:  Trends Genet       Date:  2008-02-11       Impact factor: 11.639

4.  Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.

Authors:  Peter A C 't Hoen; Marc R Friedländer; Jonas Almlöf; Michael Sammeth; Irina Pulyakhina; Seyed Yahya Anvar; Jeroen F J Laros; Henk P J Buermans; Olof Karlberg; Mathias Brännvall; Johan T den Dunnen; Gert-Jan B van Ommen; Ivo G Gut; Roderic Guigó; Xavier Estivill; Ann-Christine Syvänen; Emmanouil T Dermitzakis; Tuuli Lappalainen
Journal:  Nat Biotechnol       Date:  2013-09-15       Impact factor: 54.908

5.  Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato.

Authors:  Daniel Koenig; José M Jiménez-Gómez; Seisuke Kimura; Daniel Fulop; Daniel H Chitwood; Lauren R Headland; Ravi Kumar; Michael F Covington; Upendra Kumar Devisetty; An V Tat; Takayuki Tohge; Anthony Bolger; Korbinian Schneeberger; Stephan Ossowski; Christa Lanz; Guangyan Xiong; Mallorie Taylor-Teeples; Siobhan M Brady; Markus Pauly; Detlef Weigel; Björn Usadel; Alisdair R Fernie; Jie Peng; Neelima R Sinha; Julin N Maloof
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-26       Impact factor: 11.205

6.  Robustly detecting differential expression in RNA sequencing data using observation weights.

Authors:  Xiaobei Zhou; Helen Lindsay; Mark D Robinson
Journal:  Nucleic Acids Res       Date:  2014-04-20       Impact factor: 16.971

7.  OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.

Authors:  Joseph G Dubouzet; Yoh Sakuma; Yusuke Ito; Mie Kasuga; Emilyn G Dubouzet; Setsuko Miura; Motoaki Seki; Kazuo Shinozaki; Kazuko Yamaguchi-Shinozaki
Journal:  Plant J       Date:  2003-02       Impact factor: 6.417

8.  Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes.

Authors:  Liang-Fa Ge; Dai-Yin Chao; Min Shi; Mei-Zhen Zhu; Ji-Ping Gao; Hong-Xuan Lin
Journal:  Planta       Date:  2008-03-26       Impact factor: 4.116

9.  Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq.

Authors:  Akshay Kakumanu; Madana M R Ambavaram; Curtis Klumas; Arjun Krishnan; Utlwang Batlang; Elijah Myers; Ruth Grene; Andy Pereira
Journal:  Plant Physiol       Date:  2012-07-26       Impact factor: 8.340

10.  Nuclear moonlighting of cytosolic glyceraldehyde-3-phosphate dehydrogenase regulates Arabidopsis response to heat stress.

Authors:  Sang-Chul Kim; Liang Guo; Xuemin Wang
Journal:  Nat Commun       Date:  2020-07-10       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.